Wall clock time and date at job start Fri Apr 10 2020 17:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47083 * 2 1 4 4 C 1.46764 * 124.35138 * 90.00335 * 3 2 1 5 5 C 1.54482 * 105.47458 * 162.98065 * 4 3 2 6 6 H 1.08997 * 110.97054 * 267.29773 * 5 4 3 7 7 C 1.50693 * 111.00230 * 143.54915 * 5 4 3 8 8 O 1.21302 * 120.00060 * 6.14835 * 7 5 4 9 9 N 1.34774 * 120.00623 * 186.14949 * 7 5 4 10 10 C 1.37102 * 119.99435 * 359.97438 * 9 7 5 11 11 H 1.07997 * 120.00336 * 325.69752 * 10 9 7 12 12 C 1.38959 * 119.99847 * 145.69589 * 10 9 7 13 13 N 1.31407 * 119.99610 * 338.08049 * 12 10 9 14 14 Si 1.86798 * 119.99763 * 158.08275 * 12 10 9 15 15 H 1.48503 * 109.47097 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47046 * 120.00001 * 14 12 10 17 17 H 1.48500 * 109.47006 * 239.99831 * 14 12 10 18 18 C 1.46493 * 120.00421 * 179.97438 * 9 7 5 19 19 C 1.52994 * 109.47310 * 84.53967 * 18 9 7 20 20 C 1.50706 * 109.47301 * 179.97438 * 19 18 9 21 21 O 1.20821 * 119.99609 * 359.97438 * 20 19 18 22 22 O 1.34225 * 119.99902 * 180.02562 * 20 19 18 23 23 C 1.54624 * 101.76433 * 25.41368 * 5 4 3 24 24 C 1.34748 * 124.29725 * 269.95833 * 3 2 1 25 25 O 1.21283 * 125.12475 * 0.42678 * 24 3 2 26 26 H 1.09004 * 109.46958 * 299.99813 * 1 2 3 27 27 H 1.08998 * 109.47457 * 60.00118 * 1 2 3 28 28 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46515 * 239.99886 * 2 1 3 30 30 H 1.08998 * 109.47001 * 120.00157 * 2 1 3 31 31 H 1.08996 * 110.24441 * 43.98292 * 4 3 2 32 32 H 1.08998 * 110.31825 * 282.01864 * 4 3 2 33 33 H 0.97001 * 119.99491 * 180.02562 * 13 12 10 34 34 H 1.09008 * 109.46920 * 204.53796 * 18 9 7 35 35 H 1.09000 * 109.47261 * 324.53454 * 18 9 7 36 36 H 1.09002 * 109.47363 * 299.99959 * 19 18 9 37 37 H 1.09008 * 109.47486 * 59.99875 * 19 18 9 38 38 H 0.96697 * 117.00038 * 179.97438 * 22 20 19 39 39 H 1.09008 * 110.48387 * 93.88404 * 23 5 4 40 40 H 1.09005 * 110.48799 * 216.38835 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1745 3.3440 0.7486 6 1 4.2332 3.1032 0.8446 7 6 2.8384 4.5991 1.5120 8 8 2.0531 4.5553 2.4355 9 7 3.4103 5.7702 1.1688 10 6 4.2982 5.8196 0.1254 11 1 4.9552 4.9839 -0.0646 12 6 4.3528 6.9452 -0.6877 13 7 3.3210 7.7558 -0.7576 14 14 5.8930 7.3057 -1.6813 15 1 6.9043 6.2481 -1.4281 16 1 5.5546 7.3317 -3.1270 17 1 6.4447 8.6241 -1.2783 18 6 3.0831 6.9904 1.9106 19 6 3.9655 7.0815 3.1571 20 6 3.6293 8.3371 3.9199 21 8 2.7723 9.0826 3.5084 22 8 4.2828 8.6275 5.0558 23 6 2.7696 3.4753 -0.7378 24 6 2.2722 2.0967 -1.1132 25 8 2.1239 1.6970 -2.2486 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.8324 1.5531 1.9382 32 1 1.3645 2.5308 1.6443 33 1 3.3590 8.5413 -1.3255 34 1 3.2592 7.8594 1.2765 35 1 2.0349 6.9644 2.2085 36 1 3.7895 6.2126 3.7913 37 1 5.0137 7.1075 2.8592 38 1 4.0327 9.4438 5.5097 39 1 1.9746 4.2122 -0.8530 40 1 3.6323 3.7482 -1.3457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605465476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:24 Heat of formation + Delta-G solvation = -159.818440 kcal Electronic energy + Delta-G solvation = -25018.973081 eV Core-core repulsion = 21219.860337 eV Total energy + Delta-G solvation = -3799.112744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28239 -39.83581 -38.48055 -36.05859 -35.78117 -35.04501 -33.57260 -32.05132 -30.81210 -29.16050 -27.17917 -25.33470 -24.65645 -23.18263 -21.91780 -20.43787 -19.22822 -18.94317 -17.83647 -17.26115 -16.50534 -16.28148 -15.86206 -15.70797 -15.34789 -14.93689 -14.54987 -14.24900 -13.95904 -13.65291 -13.26286 -13.16663 -13.01006 -12.76719 -12.57300 -12.34993 -11.99745 -11.83565 -11.75807 -11.38490 -11.23185 -11.17310 -11.04850 -10.86910 -10.76741 -10.68577 -10.45583 -10.20396 -10.12702 -9.45395 -9.27186 -8.65583 -8.40699 -7.76833 -6.53213 -4.22854 2.61940 2.97688 3.02754 3.16056 3.18570 3.25159 3.36462 3.65803 4.00477 4.49680 4.75752 4.87959 4.97440 5.23688 5.27059 5.41019 5.48918 5.50683 5.60085 5.69599 5.73116 5.89085 5.91898 5.93895 6.13045 6.16639 6.23904 6.27087 6.48782 6.59750 6.74876 6.79937 6.84851 7.20554 7.33912 7.40528 7.68507 8.17123 8.25762 8.53481 8.89519 9.26933 9.69728 10.47965 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.005211 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.977884 B = 5372.120782 C = 6906.226599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.625 5.625 4 C 0.118 3.882 5 C -0.097 4.097 6 H 0.102 0.898 7 C 0.477 3.523 8 O -0.600 6.600 9 N -0.429 5.429 10 C -0.351 4.351 11 H 0.096 0.904 12 C 0.048 3.952 13 N -0.846 5.846 14 Si 0.909 3.091 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.126 3.874 19 C -0.125 4.125 20 C 0.483 3.517 21 O -0.514 6.514 22 O -0.525 6.525 23 C -0.124 4.124 24 C 0.517 3.483 25 O -0.543 6.543 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.273 0.727 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.401 0.599 39 H 0.108 0.892 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -6.404 5.741 8.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.360 5.360 4 C -0.004 4.004 5 C -0.119 4.119 6 H 0.120 0.880 7 C 0.265 3.735 8 O -0.487 6.487 9 N -0.146 5.146 10 C -0.479 4.479 11 H 0.113 0.887 12 C -0.160 4.160 13 N -0.481 5.481 14 Si 0.735 3.265 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.204 1.204 18 C 0.002 3.998 19 C -0.164 4.164 20 C 0.325 3.675 21 O -0.401 6.401 22 O -0.336 6.336 23 C -0.164 4.164 24 C 0.306 3.694 25 O -0.420 6.420 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.259 0.741 39 H 0.127 0.873 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.492 -6.663 5.158 8.557 hybrid contribution 0.653 0.903 -0.144 1.124 sum 2.144 -5.759 5.014 7.932 Atomic orbital electron populations 1.22167 0.96122 1.01844 1.02692 1.21256 0.94247 0.81786 1.02587 1.48514 1.66175 1.13516 1.07812 1.21989 1.00745 0.91538 0.86175 1.21828 1.00781 0.93907 0.95395 0.88002 1.19947 0.82047 0.85561 0.85895 1.90556 1.38093 1.86616 1.33387 1.43377 1.38180 1.05268 1.27781 1.19462 1.15546 1.05310 1.07536 0.88666 1.25352 0.97145 0.97099 0.96418 1.69924 1.27339 1.14454 1.36407 0.86150 0.81943 0.78869 0.79510 1.18966 1.20453 1.20431 1.21225 0.96801 0.91645 0.90138 1.21855 1.04269 0.92330 0.97969 1.23765 0.77940 0.87699 0.78110 1.90709 1.31491 1.50487 1.67432 1.84585 1.63748 1.46916 1.38395 1.22178 1.04524 0.93925 0.95786 1.21399 0.75943 0.87978 0.84061 1.90658 1.54452 1.75793 1.21141 0.92258 0.92287 0.91829 0.90413 0.90682 0.90787 0.89546 0.91635 0.86321 0.91692 0.88303 0.87797 0.74088 0.87343 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.12 1.52 6.66 -4.05 -0.03 1.50 16 3 N -0.63 -9.62 2.94 -172.32 -0.51 -10.13 16 4 C 0.12 1.81 6.67 -3.12 -0.02 1.79 16 5 C -0.10 -1.69 2.63 -90.14 -0.24 -1.93 16 6 H 0.10 1.60 7.80 -51.93 -0.40 1.20 16 7 C 0.48 10.03 6.93 -10.99 -0.08 9.96 16 8 O -0.60 -13.82 15.24 5.54 0.08 -13.73 16 9 N -0.43 -9.46 2.56 -114.82 -0.29 -9.76 16 10 C -0.35 -7.74 7.31 -14.93 -0.11 -7.85 16 11 H 0.10 1.98 6.67 -52.49 -0.35 1.63 16 12 C 0.05 1.09 4.92 -17.47 -0.09 1.01 16 13 N -0.85 -20.92 11.34 55.50 0.63 -20.29 16 14 Si 0.91 18.05 29.61 -169.99 -5.03 13.02 16 15 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 18 C 0.13 2.79 4.18 -4.05 -0.02 2.77 16 19 C -0.13 -2.28 6.10 -27.88 -0.17 -2.45 16 20 C 0.48 8.41 8.33 36.01 0.30 8.71 16 21 O -0.51 -10.55 16.74 -18.75 -0.31 -10.87 16 22 O -0.52 -7.08 13.42 -39.24 -0.53 -7.60 16 23 C -0.12 -2.27 5.15 -26.74 -0.14 -2.41 16 24 C 0.52 9.45 8.04 -10.71 -0.09 9.37 16 25 O -0.54 -11.48 17.61 5.56 0.10 -11.38 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.46 7.06 -51.93 -0.37 1.09 16 33 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 34 H 0.12 2.89 5.32 -51.92 -0.28 2.61 16 35 H 0.06 1.56 7.55 -51.93 -0.39 1.17 16 36 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 37 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 38 H 0.40 3.51 9.10 45.56 0.41 3.93 16 39 H 0.11 2.22 7.89 -51.92 -0.41 1.81 16 40 H 0.11 2.07 7.31 -51.93 -0.38 1.69 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -30.08 339.88 -5.70 -35.78 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.67 Total: 10.97 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: -0.29 Total: 18.87 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.17 Total: -40.17 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.66 Total: -43.59 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.08 -5.70 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605465476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.037 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds