Wall clock time and date at job start Fri Apr 10 2020 17:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47083 * 2 1 4 4 C 1.46764 * 124.35138 * 90.00335 * 3 2 1 5 5 C 1.54482 * 105.47458 * 162.98065 * 4 3 2 6 6 H 1.08997 * 110.97054 * 267.29773 * 5 4 3 7 7 C 1.50693 * 111.00230 * 143.54915 * 5 4 3 8 8 O 1.21302 * 120.00060 * 6.14835 * 7 5 4 9 9 N 1.34774 * 120.00623 * 186.14949 * 7 5 4 10 10 C 1.37102 * 119.99435 * 359.97438 * 9 7 5 11 11 H 1.07997 * 120.00336 * 325.69752 * 10 9 7 12 12 C 1.38959 * 119.99847 * 145.69589 * 10 9 7 13 13 N 1.31407 * 119.99610 * 338.08049 * 12 10 9 14 14 Si 1.86798 * 119.99763 * 158.08275 * 12 10 9 15 15 H 1.48503 * 109.47097 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47046 * 120.00001 * 14 12 10 17 17 H 1.48500 * 109.47006 * 239.99831 * 14 12 10 18 18 C 1.46493 * 120.00421 * 179.97438 * 9 7 5 19 19 C 1.52994 * 109.47310 * 84.53967 * 18 9 7 20 20 C 1.50706 * 109.47301 * 179.97438 * 19 18 9 21 21 O 1.20821 * 119.99609 * 359.97438 * 20 19 18 22 22 O 1.34225 * 119.99902 * 180.02562 * 20 19 18 23 23 C 1.54624 * 101.76433 * 25.41368 * 5 4 3 24 24 C 1.34748 * 124.29725 * 269.95833 * 3 2 1 25 25 O 1.21283 * 125.12475 * 0.42678 * 24 3 2 26 26 H 1.09004 * 109.46958 * 299.99813 * 1 2 3 27 27 H 1.08998 * 109.47457 * 60.00118 * 1 2 3 28 28 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46515 * 239.99886 * 2 1 3 30 30 H 1.08998 * 109.47001 * 120.00157 * 2 1 3 31 31 H 1.08996 * 110.24441 * 43.98292 * 4 3 2 32 32 H 1.08998 * 110.31825 * 282.01864 * 4 3 2 33 33 H 0.97001 * 119.99491 * 180.02562 * 13 12 10 34 34 H 1.09008 * 109.46920 * 204.53796 * 18 9 7 35 35 H 1.09000 * 109.47261 * 324.53454 * 18 9 7 36 36 H 1.09002 * 109.47363 * 299.99959 * 19 18 9 37 37 H 1.09008 * 109.47486 * 59.99875 * 19 18 9 38 38 H 0.96697 * 117.00038 * 179.97438 * 22 20 19 39 39 H 1.09008 * 110.48387 * 93.88404 * 23 5 4 40 40 H 1.09005 * 110.48799 * 216.38835 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1745 3.3440 0.7486 6 1 4.2332 3.1032 0.8446 7 6 2.8384 4.5991 1.5120 8 8 2.0531 4.5553 2.4355 9 7 3.4103 5.7702 1.1688 10 6 4.2982 5.8196 0.1254 11 1 4.9552 4.9839 -0.0646 12 6 4.3528 6.9452 -0.6877 13 7 3.3210 7.7558 -0.7576 14 14 5.8930 7.3057 -1.6813 15 1 6.9043 6.2481 -1.4281 16 1 5.5546 7.3317 -3.1270 17 1 6.4447 8.6241 -1.2783 18 6 3.0831 6.9904 1.9106 19 6 3.9655 7.0815 3.1571 20 6 3.6293 8.3371 3.9199 21 8 2.7723 9.0826 3.5084 22 8 4.2828 8.6275 5.0558 23 6 2.7696 3.4753 -0.7378 24 6 2.2722 2.0967 -1.1132 25 8 2.1239 1.6970 -2.2486 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.8324 1.5531 1.9382 32 1 1.3645 2.5308 1.6443 33 1 3.3590 8.5413 -1.3255 34 1 3.2592 7.8594 1.2765 35 1 2.0349 6.9644 2.2085 36 1 3.7895 6.2126 3.7913 37 1 5.0137 7.1075 2.8592 38 1 4.0327 9.4438 5.5097 39 1 1.9746 4.2122 -0.8530 40 1 3.6323 3.7482 -1.3457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605465476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:23 Heat of formation + Delta-G solvation = -179.982107 kcal Electronic energy + Delta-G solvation = -25019.847443 eV Core-core repulsion = 21219.860337 eV Total energy + Delta-G solvation = -3799.987106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74311 -41.22576 -40.09099 -37.51714 -37.12369 -36.72406 -34.82477 -33.77052 -32.35591 -30.42171 -28.59459 -27.05505 -26.16871 -24.36800 -23.30910 -21.87566 -20.90410 -20.31334 -19.24851 -18.75962 -18.04035 -17.67225 -17.36007 -17.12497 -16.80344 -16.34773 -16.16374 -15.74351 -15.55918 -14.89385 -14.69569 -14.45432 -14.40161 -14.22979 -14.05358 -13.81117 -13.43015 -13.21815 -13.01236 -12.87806 -12.76637 -12.54966 -12.52280 -12.29924 -12.18064 -12.02324 -11.94818 -11.84123 -11.62831 -11.01131 -10.95093 -10.33458 -9.70707 -9.53380 -8.28268 -6.01497 1.22450 1.43746 1.51822 1.54245 1.64261 1.90911 2.01557 2.11256 2.38556 2.95074 3.08483 3.47481 3.67212 4.01591 4.08595 4.09938 4.16892 4.21412 4.30138 4.48841 4.50959 4.60630 4.64221 4.75143 4.79343 4.85500 4.92741 5.01308 5.08329 5.12854 5.28175 5.41094 5.55105 5.63180 5.64982 5.96940 6.06280 6.41452 7.02792 7.12803 7.14995 7.56078 7.98136 8.73917 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.005211 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.977884 B = 5372.120782 C = 6906.226599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.126 3.874 5 C -0.091 4.091 6 H 0.129 0.871 7 C 0.472 3.528 8 O -0.623 6.623 9 N -0.440 5.440 10 C -0.347 4.347 11 H 0.114 0.886 12 C 0.006 3.994 13 N -0.888 5.888 14 Si 0.969 3.031 15 H -0.247 1.247 16 H -0.289 1.289 17 H -0.283 1.283 18 C 0.130 3.870 19 C -0.116 4.116 20 C 0.493 3.507 21 O -0.552 6.552 22 O -0.508 6.508 23 C -0.119 4.119 24 C 0.515 3.485 25 O -0.577 6.577 26 H 0.057 0.943 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.270 0.730 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.426 0.574 39 H 0.079 0.921 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -8.299 7.107 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.348 5.348 4 C 0.003 3.997 5 C -0.112 4.112 6 H 0.147 0.853 7 C 0.262 3.738 8 O -0.510 6.510 9 N -0.157 5.157 10 C -0.474 4.474 11 H 0.131 0.869 12 C -0.198 4.198 13 N -0.524 5.524 14 Si 0.794 3.206 15 H -0.170 1.170 16 H -0.216 1.216 17 H -0.209 1.209 18 C 0.006 3.994 19 C -0.155 4.155 20 C 0.337 3.663 21 O -0.443 6.443 22 O -0.321 6.321 23 C -0.159 4.159 24 C 0.304 3.696 25 O -0.457 6.457 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.288 0.712 39 H 0.097 0.903 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.320 -8.582 6.590 11.318 hybrid contribution 0.019 1.480 -0.469 1.553 sum 3.339 -7.101 6.121 9.952 Atomic orbital electron populations 1.22139 0.95644 1.03355 1.01278 1.21591 0.94637 0.79967 1.04291 1.48587 1.64876 1.14513 1.06805 1.21982 1.00012 0.91268 0.86444 1.21829 1.02730 0.92841 0.93802 0.85347 1.20529 0.81291 0.86339 0.85663 1.90538 1.38878 1.87129 1.34486 1.43579 1.38578 1.05497 1.28070 1.19815 1.15098 1.05527 1.06943 0.86900 1.26086 0.99112 0.97078 0.97479 1.70051 1.29325 1.15184 1.37877 0.85231 0.79263 0.78766 0.77388 1.17017 1.21554 1.20944 1.20973 0.95886 0.91137 0.91450 1.21629 1.04024 0.93281 0.96537 1.23470 0.77287 0.86916 0.78667 1.90710 1.33265 1.51620 1.68684 1.84502 1.62503 1.48399 1.36708 1.22034 1.03508 0.93671 0.96733 1.21284 0.76020 0.88020 0.84233 1.90637 1.56193 1.76373 1.22522 0.92342 0.94960 0.88912 0.90656 0.86981 0.87026 0.91152 0.92068 0.88658 0.94847 0.87519 0.86244 0.71242 0.90296 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 10.24 71.98 0.74 -2.77 16 2 C 0.12 2.52 6.66 86.38 0.57 3.10 16 3 N -0.61 -17.65 2.94 -817.51 -2.40 -20.06 16 4 C 0.13 3.52 6.67 86.83 0.58 4.10 16 5 C -0.09 -2.99 2.63 -10.49 -0.03 -3.02 16 6 H 0.13 3.60 7.80 -2.39 -0.02 3.59 16 7 C 0.47 19.66 6.93 87.66 0.61 20.27 16 8 O -0.62 -28.61 15.24 -3.10 -0.05 -28.66 16 9 N -0.44 -19.47 2.56 -635.55 -1.62 -21.10 16 10 C -0.35 -15.08 7.31 84.04 0.61 -14.47 16 11 H 0.11 4.45 6.67 -2.91 -0.02 4.43 16 12 C 0.01 0.29 4.92 84.93 0.42 0.71 16 13 N -0.89 -45.34 11.34 21.67 0.25 -45.10 16 14 Si 0.97 36.77 29.61 68.60 2.03 38.80 16 15 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 16 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 18 C 0.13 5.89 4.18 86.38 0.36 6.26 16 19 C -0.12 -4.15 6.10 29.85 0.18 -3.97 16 20 C 0.49 16.78 8.33 71.24 0.59 17.37 16 21 O -0.55 -22.95 16.74 21.98 0.37 -22.58 16 22 O -0.51 -12.46 13.42 -51.37 -0.69 -13.15 16 23 C -0.12 -4.34 5.15 30.59 0.16 -4.18 16 24 C 0.52 18.54 8.04 87.85 0.71 19.24 16 25 O -0.58 -24.42 17.61 -3.04 -0.05 -24.47 16 26 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.73 7.94 -2.39 -0.02 1.71 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.07 2.27 7.06 -2.39 -0.02 2.25 16 33 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 34 H 0.10 4.83 5.32 -2.38 -0.01 4.82 16 35 H 0.03 1.68 7.55 -2.39 -0.02 1.66 16 36 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 37 H 0.12 3.90 8.14 -2.38 -0.02 3.88 16 38 H 0.43 6.30 9.10 -74.06 -0.67 5.63 16 39 H 0.08 3.35 7.89 -2.38 -0.02 3.34 16 40 H 0.11 4.04 7.31 -2.38 -0.02 4.02 16 Total: -1.00 -67.21 339.88 3.73 -63.48 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.40 Total: 30.19 kcal Atomic # 6 Polarization: 37.13 SS G_CDS: 5.50 Total: 42.64 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -3.78 Total: -86.25 kcal Atomic # 8 Polarization: -88.44 SS G_CDS: -0.42 Total: -88.86 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -67.21 3.73 -63.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605465476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.502 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds