Wall clock time and date at job start Fri Apr 10 2020 17:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46508 * 109.47011 * 2 1 4 4 C 1.46821 * 124.33433 * 269.93451 * 3 2 1 5 5 C 1.54478 * 105.44166 * 196.99792 * 4 3 2 6 6 H 1.09011 * 110.96872 * 92.76735 * 5 4 3 7 7 C 1.50701 * 110.97197 * 216.49391 * 5 4 3 8 8 O 1.21291 * 119.99804 * 356.90715 * 7 5 4 9 9 N 1.34776 * 120.00246 * 176.91739 * 7 5 4 10 10 C 1.37107 * 119.99780 * 359.97438 * 9 7 5 11 11 H 1.07996 * 120.00168 * 50.74149 * 10 9 7 12 12 C 1.38949 * 119.99625 * 230.74395 * 10 9 7 13 13 N 1.31409 * 119.99735 * 202.31135 * 12 10 9 14 14 Si 1.86802 * 119.99920 * 22.04109 * 12 10 9 15 15 H 1.48511 * 109.46937 * 174.40994 * 14 12 10 16 16 H 1.48495 * 109.47134 * 294.40272 * 14 12 10 17 17 H 1.48497 * 109.47223 * 54.40832 * 14 12 10 18 18 C 1.46493 * 119.99859 * 180.02562 * 9 7 5 19 19 C 1.53003 * 109.46774 * 275.37904 * 18 9 7 20 20 C 1.50701 * 109.47130 * 184.52521 * 19 18 9 21 21 O 1.20824 * 120.00028 * 0.02562 * 20 19 18 22 22 O 1.34228 * 120.00211 * 179.97438 * 20 19 18 23 23 C 1.54628 * 101.80140 * 334.63131 * 5 4 3 24 24 C 1.34415 * 124.34615 * 89.97350 * 3 2 1 25 25 O 1.21285 * 124.94355 * 359.62434 * 24 3 2 26 26 H 1.09005 * 109.46757 * 59.99927 * 1 2 3 27 27 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47428 * 299.99982 * 1 2 3 29 29 H 1.08999 * 109.46940 * 240.00173 * 2 1 3 30 30 H 1.08992 * 109.46608 * 119.99826 * 2 1 3 31 31 H 1.08996 * 110.23561 * 78.02402 * 4 3 2 32 32 H 1.09000 * 110.28324 * 316.00242 * 4 3 2 33 33 H 0.97003 * 120.00098 * 359.72429 * 13 12 10 34 34 H 1.08990 * 109.47429 * 35.38023 * 18 9 7 35 35 H 1.09000 * 109.47375 * 155.38860 * 18 9 7 36 36 H 1.08997 * 109.47260 * 304.52728 * 19 18 9 37 37 H 1.09004 * 109.46658 * 64.52968 * 19 18 9 38 38 H 0.96696 * 117.00603 * 179.97438 * 22 20 19 39 39 H 1.09006 * 110.48977 * 143.45413 * 23 5 4 40 40 H 1.08996 * 110.48585 * 266.09664 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2957 2.1616 -1.2124 5 6 3.1749 3.3440 -0.7484 6 1 4.2339 3.1038 -0.8439 7 6 2.8383 4.5987 -1.5123 8 8 2.0125 4.5650 -2.4000 9 7 3.4550 5.7581 -1.2092 10 6 4.3882 5.7962 -0.2055 11 1 5.1970 5.0806 -0.1927 12 6 4.2933 6.7554 0.7953 13 7 5.3596 7.0926 1.4854 14 14 2.6516 7.5709 1.1547 15 1 2.7851 8.4490 2.3450 16 1 2.2361 8.3843 -0.0162 17 1 1.6286 6.5280 1.4211 18 6 3.1273 6.9778 -1.9515 19 6 3.9577 7.0320 -3.2354 20 6 3.7036 8.3379 -3.9433 21 8 2.9373 9.1429 -3.4693 22 8 4.3292 8.6072 -5.0999 23 6 2.7692 3.4755 0.7379 24 6 2.2707 2.0965 1.1098 25 8 2.1211 1.6944 2.2443 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3654 2.5301 -1.6445 32 1 2.8347 1.5529 -1.9384 33 1 6.2121 6.6691 1.2988 34 1 2.0672 6.9756 -2.2043 35 1 3.3524 7.8491 -1.3363 36 1 5.0161 6.9532 -2.9872 37 1 3.6746 6.2048 -3.8863 38 1 4.1339 9.4574 -5.5171 39 1 3.6322 3.7461 1.3465 40 1 1.9743 4.2124 0.8526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605465478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:27 Heat of formation + Delta-G solvation = -161.668875 kcal Electronic energy + Delta-G solvation = -25137.338972 eV Core-core repulsion = 21338.145987 eV Total energy + Delta-G solvation = -3799.192985 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42242 -39.99053 -38.70383 -36.15937 -35.90163 -35.17209 -33.67043 -32.43172 -30.92709 -29.29193 -27.27782 -25.09001 -24.65738 -23.29098 -21.97214 -20.74328 -19.33317 -18.96034 -18.00859 -17.49542 -16.69635 -16.42773 -16.29871 -15.87377 -15.34537 -15.02638 -14.70546 -14.49173 -13.95769 -13.70918 -13.33212 -13.21116 -13.16223 -12.90383 -12.82069 -12.53672 -12.27499 -11.97664 -11.92154 -11.81842 -11.37703 -11.26213 -11.05482 -10.82076 -10.77865 -10.40995 -10.35666 -10.02425 -9.76274 -9.54820 -9.20504 -8.79048 -8.47992 -8.04252 -6.90856 -4.41711 2.45940 2.92277 3.12156 3.16707 3.23669 3.30454 3.39621 3.56056 4.14527 4.21681 4.67884 4.83623 4.88574 5.16215 5.21390 5.27886 5.36077 5.42771 5.46617 5.48627 5.64538 5.71114 5.82627 5.87817 5.96685 6.01906 6.03745 6.17884 6.32892 6.42897 6.50266 6.52504 6.69444 6.77654 7.34810 7.49266 7.74816 8.09995 8.19328 8.47960 8.82085 8.98748 9.51863 10.41204 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.005217 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.101522 B = 5366.006068 C = 6474.434185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.624 5.624 4 C 0.116 3.884 5 C -0.094 4.094 6 H 0.105 0.895 7 C 0.494 3.506 8 O -0.591 6.591 9 N -0.455 5.455 10 C -0.438 4.438 11 H 0.086 0.914 12 C 0.043 3.957 13 N -0.857 5.857 14 Si 1.024 2.976 15 H -0.279 1.279 16 H -0.267 1.267 17 H -0.275 1.275 18 C 0.114 3.886 19 C -0.123 4.123 20 C 0.484 3.516 21 O -0.517 6.517 22 O -0.522 6.522 23 C -0.126 4.126 24 C 0.517 3.483 25 O -0.541 6.541 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.278 0.722 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.404 0.596 39 H 0.117 0.883 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -6.236 -8.118 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.359 5.359 4 C -0.007 4.007 5 C -0.116 4.116 6 H 0.123 0.877 7 C 0.283 3.717 8 O -0.476 6.476 9 N -0.175 5.175 10 C -0.564 4.564 11 H 0.103 0.897 12 C -0.170 4.170 13 N -0.487 5.487 14 Si 0.850 3.150 15 H -0.205 1.205 16 H -0.193 1.193 17 H -0.201 1.201 18 C -0.009 4.009 19 C -0.162 4.162 20 C 0.326 3.674 21 O -0.405 6.405 22 O -0.333 6.333 23 C -0.166 4.166 24 C 0.306 3.694 25 O -0.418 6.418 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.262 0.738 39 H 0.135 0.865 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.976 -5.554 -6.636 9.523 hybrid contribution 0.891 -0.492 -1.322 1.668 sum -3.085 -6.046 -7.958 10.460 Atomic orbital electron populations 1.22166 0.96066 1.01912 1.02663 1.21271 0.94267 0.81649 1.02693 1.48436 1.66096 1.13583 1.07755 1.22048 1.00732 0.91617 0.86351 1.21781 1.01140 0.93366 0.95302 0.87652 1.20294 0.81091 0.85778 0.84576 1.90565 1.35810 1.86427 1.34763 1.43614 1.36809 1.05760 1.31367 1.20268 1.07905 1.23401 1.04872 0.89685 1.26372 1.03419 0.94979 0.92205 1.70857 1.00323 1.35984 1.41549 0.84340 0.75280 0.77619 0.77761 1.20456 1.19333 1.20059 1.21632 0.98352 0.90014 0.90948 1.21776 1.04861 0.91726 0.97807 1.23717 0.76349 0.89276 0.78049 1.90709 1.34961 1.49292 1.65572 1.84576 1.67189 1.43800 1.37778 1.22179 1.04373 0.94098 0.95978 1.21248 0.76048 0.87932 0.84133 1.90667 1.54305 1.75609 1.21258 0.92287 0.91758 0.92261 0.90626 0.90315 0.89447 0.90651 0.91081 0.90869 0.89284 0.87195 0.87756 0.73839 0.86467 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.24 37.16 0.38 -1.52 16 2 C 0.12 1.49 6.65 -4.04 -0.03 1.46 16 3 N -0.62 -9.45 2.93 -172.37 -0.51 -9.96 16 4 C 0.12 1.71 6.69 -3.09 -0.02 1.69 16 5 C -0.09 -1.61 2.74 -90.14 -0.25 -1.86 16 6 H 0.11 1.71 7.86 -51.92 -0.41 1.30 16 7 C 0.49 9.87 6.91 -10.99 -0.08 9.79 16 8 O -0.59 -12.64 15.20 5.55 0.08 -12.55 16 9 N -0.46 -9.56 1.90 -114.82 -0.22 -9.77 16 10 C -0.44 -9.86 7.20 -14.93 -0.11 -9.96 16 11 H 0.09 1.99 7.72 -52.49 -0.41 1.58 16 12 C 0.04 1.04 5.18 -17.47 -0.09 0.95 16 13 N -0.86 -22.18 13.69 55.50 0.76 -21.42 16 14 Si 1.02 22.85 26.92 -169.99 -4.58 18.27 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.27 -5.80 5.84 56.52 0.33 -5.47 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 C 0.11 2.32 3.26 -4.04 -0.01 2.30 16 19 C -0.12 -2.09 6.10 -27.88 -0.17 -2.26 16 20 C 0.48 7.85 8.33 36.01 0.30 8.15 16 21 O -0.52 -9.91 16.69 -18.75 -0.31 -10.23 16 22 O -0.52 -6.56 13.42 -39.25 -0.53 -7.09 16 23 C -0.13 -2.32 5.34 -26.74 -0.14 -2.46 16 24 C 0.52 9.46 8.02 -10.86 -0.09 9.37 16 25 O -0.54 -11.46 17.60 5.55 0.10 -11.36 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 31 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.28 7.04 8.73 -40.82 -0.36 6.68 16 34 H 0.07 1.53 7.59 -51.93 -0.39 1.14 16 35 H 0.09 1.94 4.76 -51.93 -0.25 1.70 16 36 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.40 3.17 9.10 45.56 0.41 3.59 16 39 H 0.12 2.26 7.67 -51.93 -0.40 1.87 16 40 H 0.10 2.03 7.89 -51.93 -0.41 1.62 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -29.87 338.31 -5.21 -35.07 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.81 Total: 8.30 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: -0.30 Total: 15.64 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.04 Total: -41.16 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.66 Total: -41.23 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.58 Total: 18.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.87 -5.21 -35.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605465478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.595 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds