Wall clock time and date at job start Fri Apr 10 2020 17:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46508 * 109.47011 * 2 1 4 4 C 1.46821 * 124.33433 * 269.93451 * 3 2 1 5 5 C 1.54478 * 105.44166 * 196.99792 * 4 3 2 6 6 H 1.09011 * 110.96872 * 92.76735 * 5 4 3 7 7 C 1.50701 * 110.97197 * 216.49391 * 5 4 3 8 8 O 1.21291 * 119.99804 * 356.90715 * 7 5 4 9 9 N 1.34776 * 120.00246 * 176.91739 * 7 5 4 10 10 C 1.37107 * 119.99780 * 359.97438 * 9 7 5 11 11 H 1.07996 * 120.00168 * 50.74149 * 10 9 7 12 12 C 1.38949 * 119.99625 * 230.74395 * 10 9 7 13 13 N 1.31409 * 119.99735 * 202.31135 * 12 10 9 14 14 Si 1.86802 * 119.99920 * 22.04109 * 12 10 9 15 15 H 1.48511 * 109.46937 * 174.40994 * 14 12 10 16 16 H 1.48495 * 109.47134 * 294.40272 * 14 12 10 17 17 H 1.48497 * 109.47223 * 54.40832 * 14 12 10 18 18 C 1.46493 * 119.99859 * 180.02562 * 9 7 5 19 19 C 1.53003 * 109.46774 * 275.37904 * 18 9 7 20 20 C 1.50701 * 109.47130 * 184.52521 * 19 18 9 21 21 O 1.20824 * 120.00028 * 0.02562 * 20 19 18 22 22 O 1.34228 * 120.00211 * 179.97438 * 20 19 18 23 23 C 1.54628 * 101.80140 * 334.63131 * 5 4 3 24 24 C 1.34415 * 124.34615 * 89.97350 * 3 2 1 25 25 O 1.21285 * 124.94355 * 359.62434 * 24 3 2 26 26 H 1.09005 * 109.46757 * 59.99927 * 1 2 3 27 27 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47428 * 299.99982 * 1 2 3 29 29 H 1.08999 * 109.46940 * 240.00173 * 2 1 3 30 30 H 1.08992 * 109.46608 * 119.99826 * 2 1 3 31 31 H 1.08996 * 110.23561 * 78.02402 * 4 3 2 32 32 H 1.09000 * 110.28324 * 316.00242 * 4 3 2 33 33 H 0.97003 * 120.00098 * 359.72429 * 13 12 10 34 34 H 1.08990 * 109.47429 * 35.38023 * 18 9 7 35 35 H 1.09000 * 109.47375 * 155.38860 * 18 9 7 36 36 H 1.08997 * 109.47260 * 304.52728 * 19 18 9 37 37 H 1.09004 * 109.46658 * 64.52968 * 19 18 9 38 38 H 0.96696 * 117.00603 * 179.97438 * 22 20 19 39 39 H 1.09006 * 110.48977 * 143.45413 * 23 5 4 40 40 H 1.08996 * 110.48585 * 266.09664 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2957 2.1616 -1.2124 5 6 3.1749 3.3440 -0.7484 6 1 4.2339 3.1038 -0.8439 7 6 2.8383 4.5987 -1.5123 8 8 2.0125 4.5650 -2.4000 9 7 3.4550 5.7581 -1.2092 10 6 4.3882 5.7962 -0.2055 11 1 5.1970 5.0806 -0.1927 12 6 4.2933 6.7554 0.7953 13 7 5.3596 7.0926 1.4854 14 14 2.6516 7.5709 1.1547 15 1 2.7851 8.4490 2.3450 16 1 2.2361 8.3843 -0.0162 17 1 1.6286 6.5280 1.4211 18 6 3.1273 6.9778 -1.9515 19 6 3.9577 7.0320 -3.2354 20 6 3.7036 8.3379 -3.9433 21 8 2.9373 9.1429 -3.4693 22 8 4.3292 8.6072 -5.0999 23 6 2.7692 3.4755 0.7379 24 6 2.2707 2.0965 1.1098 25 8 2.1211 1.6944 2.2443 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3654 2.5301 -1.6445 32 1 2.8347 1.5529 -1.9384 33 1 6.2121 6.6691 1.2988 34 1 2.0672 6.9756 -2.2043 35 1 3.3524 7.8491 -1.3363 36 1 5.0161 6.9532 -2.9872 37 1 3.6746 6.2048 -3.8863 38 1 4.1339 9.4574 -5.5171 39 1 3.6322 3.7461 1.3465 40 1 1.9743 4.2124 0.8526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605465478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:26 Heat of formation + Delta-G solvation = -181.707514 kcal Electronic energy + Delta-G solvation = -25138.207912 eV Core-core repulsion = 21338.145987 eV Total energy + Delta-G solvation = -3800.061925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.86536 -41.28076 -40.26314 -37.58010 -37.17441 -36.81148 -34.90331 -34.20191 -32.42231 -30.50893 -28.67509 -26.57200 -26.38452 -24.42658 -23.33567 -22.08723 -21.02016 -20.34561 -19.41431 -18.94971 -18.25083 -17.76373 -17.69189 -17.21121 -16.71346 -16.52669 -16.16350 -16.06941 -15.59686 -14.94859 -14.71029 -14.60872 -14.50428 -14.41044 -14.23014 -13.95330 -13.81864 -13.43417 -13.20166 -12.89262 -12.79595 -12.56353 -12.32587 -12.28167 -12.13827 -11.96155 -11.75610 -11.73362 -11.57152 -11.07804 -10.90554 -10.47952 -9.83258 -9.74184 -8.79115 -6.28546 1.17806 1.37467 1.44452 1.49320 1.58329 1.77292 1.97378 2.06577 2.32047 2.71600 2.93113 3.39324 3.58700 3.86486 3.96158 4.00841 4.04497 4.15139 4.27937 4.40224 4.45471 4.49599 4.58687 4.65048 4.68999 4.78868 4.83628 4.90818 4.97021 5.01727 5.04813 5.27513 5.57995 5.60588 5.78656 5.86823 6.02311 6.31457 6.98633 7.00349 7.08934 7.28831 7.77217 8.52228 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.005217 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.101522 B = 5366.006068 C = 6474.434185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.613 5.613 4 C 0.123 3.877 5 C -0.091 4.091 6 H 0.120 0.880 7 C 0.496 3.504 8 O -0.600 6.600 9 N -0.466 5.466 10 C -0.410 4.410 11 H 0.079 0.921 12 C 0.016 3.984 13 N -0.892 5.892 14 Si 1.040 2.960 15 H -0.287 1.287 16 H -0.260 1.260 17 H -0.270 1.270 18 C 0.112 3.888 19 C -0.116 4.116 20 C 0.494 3.506 21 O -0.551 6.551 22 O -0.508 6.508 23 C -0.124 4.124 24 C 0.515 3.485 25 O -0.577 6.577 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.274 0.726 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.428 0.572 39 H 0.102 0.898 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 -7.773 -10.409 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.346 5.346 4 C 0.001 3.999 5 C -0.113 4.113 6 H 0.138 0.862 7 C 0.286 3.714 8 O -0.485 6.485 9 N -0.187 5.187 10 C -0.538 4.538 11 H 0.097 0.903 12 C -0.192 4.192 13 N -0.525 5.525 14 Si 0.865 3.135 15 H -0.213 1.213 16 H -0.185 1.185 17 H -0.195 1.195 18 C -0.011 4.011 19 C -0.154 4.154 20 C 0.338 3.662 21 O -0.442 6.442 22 O -0.321 6.321 23 C -0.165 4.165 24 C 0.304 3.696 25 O -0.457 6.457 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.290 0.710 39 H 0.121 0.879 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.184 -7.103 -9.003 12.207 hybrid contribution 0.921 -0.058 -0.742 1.184 sum -3.263 -7.161 -9.745 12.526 Atomic orbital electron populations 1.22132 0.95330 1.03419 1.01446 1.21608 0.94864 0.79785 1.04260 1.48517 1.64711 1.14577 1.06786 1.22074 1.00279 0.91104 0.86460 1.21806 1.02589 0.93059 0.93808 0.86188 1.20647 0.80424 0.86102 0.84234 1.90561 1.36050 1.86675 1.35203 1.43687 1.37044 1.06458 1.31485 1.20084 1.07252 1.21995 1.04443 0.90315 1.26818 1.03997 0.95816 0.92553 1.70902 1.00614 1.37699 1.43270 0.84128 0.74347 0.77462 0.77600 1.21345 1.18488 1.19499 1.21529 0.98464 0.88984 0.92165 1.21584 1.04411 0.92878 0.96574 1.23394 0.75767 0.88468 0.78581 1.90710 1.36604 1.50219 1.66716 1.84499 1.66007 1.45503 1.36102 1.22056 1.03273 0.94282 0.96867 1.21129 0.76160 0.87986 0.84352 1.90645 1.56142 1.76216 1.22738 0.92023 0.88960 0.94870 0.86921 0.90868 0.90124 0.86978 0.91577 0.91754 0.91105 0.86614 0.86628 0.71048 0.87926 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 10.24 71.98 0.74 -2.54 16 2 C 0.12 2.44 6.65 86.38 0.57 3.01 16 3 N -0.61 -17.18 2.93 -817.84 -2.40 -19.58 16 4 C 0.12 3.27 6.69 86.82 0.58 3.85 16 5 C -0.09 -2.96 2.74 -10.48 -0.03 -2.99 16 6 H 0.12 3.59 7.86 -2.38 -0.02 3.57 16 7 C 0.50 19.07 6.91 87.66 0.61 19.68 16 8 O -0.60 -24.46 15.20 -3.06 -0.05 -24.51 16 9 N -0.47 -19.17 1.90 -635.56 -1.20 -20.38 16 10 C -0.41 -18.40 7.20 84.04 0.61 -17.79 16 11 H 0.08 3.65 7.72 -2.91 -0.02 3.62 16 12 C 0.02 0.80 5.18 84.93 0.44 1.24 16 13 N -0.89 -47.03 13.69 21.66 0.30 -46.73 16 14 Si 1.04 46.69 26.92 68.60 1.85 48.54 16 15 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.26 -11.26 5.84 99.48 0.58 -10.68 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 C 0.11 4.48 3.26 86.38 0.28 4.76 16 19 C -0.12 -3.75 6.10 29.85 0.18 -3.57 16 20 C 0.49 15.15 8.33 71.24 0.59 15.75 16 21 O -0.55 -20.59 16.69 21.97 0.37 -20.23 16 22 O -0.51 -11.29 13.42 -51.39 -0.69 -11.98 16 23 C -0.12 -4.55 5.34 30.59 0.16 -4.39 16 24 C 0.52 18.53 8.02 87.90 0.71 19.23 16 25 O -0.58 -24.60 17.60 -3.04 -0.05 -24.65 16 26 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.67 7.93 -2.39 -0.02 1.65 16 31 H 0.08 2.33 7.01 -2.39 -0.02 2.31 16 32 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.27 14.15 8.73 -92.71 -0.81 13.34 16 34 H 0.06 2.66 7.59 -2.39 -0.02 2.64 16 35 H 0.07 3.09 4.76 -2.39 -0.01 3.08 16 36 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.12 3.49 8.14 -2.38 -0.02 3.48 16 38 H 0.43 5.38 9.10 -74.06 -0.67 4.70 16 39 H 0.10 4.04 7.67 -2.38 -0.02 4.02 16 40 H 0.09 3.43 7.89 -2.39 -0.02 3.41 16 Total: -1.00 -64.81 338.31 3.79 -61.02 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.23 Total: 22.28 kcal Atomic # 6 Polarization: 30.79 SS G_CDS: 5.44 Total: 36.23 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -3.31 Total: -86.69 kcal Atomic # 8 Polarization: -80.95 SS G_CDS: -0.42 Total: -81.37 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.85 Total: 48.54 kcal Total: -64.81 3.79 -61.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605465478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.685 kcal (2) G-P(sol) polarization free energy of solvation -64.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds