Wall clock time and date at job start Fri Apr 10 2020 17:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48502 * 109.46969 * 269.99792 * 3 2 1 5 5 H 1.48499 * 109.46918 * 29.99655 * 3 2 1 6 6 H 1.48499 * 109.47306 * 149.99853 * 3 2 1 7 7 C 1.37878 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.26901 * 59.30222 * 9 7 2 11 11 C 1.54590 * 110.30995 * 297.21413 * 9 7 2 12 12 C 1.55103 * 102.84305 * 219.18292 * 11 9 7 13 13 N 1.48527 * 103.28631 * 37.30839 * 12 11 9 14 14 C 1.46898 * 111.00435 * 200.33396 * 13 12 11 15 15 H 1.08991 * 110.43908 * 173.47806 * 14 13 12 16 16 C 1.54634 * 110.48429 * 296.16693 * 14 13 12 17 17 C 1.54482 * 101.76507 * 143.47341 * 16 14 13 18 18 N 1.46761 * 105.47232 * 334.57932 * 17 16 14 19 19 C 1.46497 * 124.34811 * 197.03686 * 18 17 16 20 20 C 1.50709 * 109.47422 * 270.00357 * 19 18 17 21 21 O 1.20820 * 119.99532 * 0.02562 * 20 19 18 22 22 O 1.34230 * 120.00239 * 180.02562 * 20 19 18 23 23 C 1.34423 * 111.30181 * 17.02025 * 18 17 16 24 24 O 1.21283 * 124.93878 * 179.62097 * 23 18 17 25 25 C 1.47910 * 105.81868 * 320.84537 * 13 12 11 26 26 H 0.96998 * 119.99694 * 0.02562 * 1 2 3 27 27 H 0.96701 * 113.99999 * 300.69876 * 10 9 7 28 28 H 1.09003 * 110.72391 * 337.48374 * 11 9 7 29 29 H 1.09005 * 110.72776 * 100.76532 * 11 9 7 30 30 H 1.08994 * 110.59168 * 278.86932 * 12 11 9 31 31 H 1.09009 * 110.82887 * 155.84749 * 12 11 9 32 32 H 1.09003 * 110.96496 * 261.59443 * 16 14 13 33 33 H 1.09002 * 110.96714 * 25.35379 * 16 14 13 34 34 H 1.09006 * 110.24206 * 215.58427 * 17 16 14 35 35 H 1.08997 * 110.24688 * 93.58552 * 17 16 14 36 36 H 1.08998 * 109.47316 * 30.00600 * 19 18 17 37 37 H 1.09000 * 109.47449 * 150.00851 * 19 18 17 38 38 H 0.96698 * 116.99736 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.91687 * 265.98085 * 25 13 12 40 40 H 1.08994 * 110.08364 * 144.77473 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.4104 -2.5865 -1.1506 11 6 0.4090 -2.6315 1.2914 12 6 0.5686 -4.1309 1.6550 13 7 1.9796 -4.4214 1.2937 14 6 2.1897 -5.8636 1.1094 15 1 3.1944 -6.0569 0.7337 16 6 1.9505 -6.6193 2.4371 17 6 1.2886 -7.9244 1.9419 18 7 0.6617 -7.5832 0.6595 19 6 -0.3676 -8.3919 0.0016 20 6 0.2891 -9.3957 -0.9108 21 8 1.4933 -9.4321 -1.0017 22 8 -0.4638 -10.2492 -1.6224 23 6 1.1530 -6.4333 0.1663 24 8 0.8140 -5.9261 -0.8819 25 6 2.2341 -3.6839 0.0371 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2441 -1.8775 -1.2146 28 1 0.8120 -1.9982 2.0818 29 1 -0.6358 -2.3893 1.0966 30 1 -0.1136 -4.7430 1.0652 31 1 0.4036 -4.2910 2.7206 32 1 2.8934 -6.8276 2.9427 33 1 1.2759 -6.0620 3.0870 34 1 0.5336 -8.2581 2.6538 35 1 2.0421 -8.6989 1.7992 36 1 -0.9549 -8.9160 0.7556 37 1 -1.0211 -7.7435 -0.5821 38 1 0.0025 -10.8749 -2.1934 39 1 2.0600 -4.3366 -0.8183 40 1 3.2599 -3.3159 0.0203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:34 Heat of formation + Delta-G solvation = -146.853658 kcal Electronic energy + Delta-G solvation = -25642.529325 eV Core-core repulsion = 21843.978776 eV Total energy + Delta-G solvation = -3798.550549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06241 -40.05929 -37.72125 -36.44375 -36.16693 -34.73101 -32.33335 -31.96984 -29.37762 -28.07414 -27.79749 -26.13905 -24.12008 -22.54396 -21.87249 -20.45760 -19.34383 -19.04440 -18.40147 -17.22785 -16.96101 -16.58114 -16.32730 -15.94236 -15.40958 -14.78560 -14.47734 -14.24042 -13.85097 -13.75582 -13.65544 -13.20844 -12.79389 -12.68207 -12.35697 -11.98953 -11.88418 -11.72717 -11.59577 -11.46428 -11.12598 -10.92660 -10.89569 -10.66366 -10.59601 -10.38680 -10.24174 -9.99714 -9.80763 -8.98801 -8.92995 -8.48195 -7.95564 -7.68150 -6.10542 -4.16575 1.98134 2.36144 2.75892 3.21977 3.29675 3.36189 3.40275 4.22896 4.40026 4.44895 4.61281 4.85316 4.94536 4.99735 5.03909 5.15230 5.18123 5.33215 5.52017 5.72139 5.86268 5.99123 6.06810 6.20392 6.24592 6.29157 6.33041 6.53345 6.73799 6.99379 7.01877 7.11569 7.31329 7.58340 7.63345 7.65581 7.72400 7.92746 8.27886 8.29077 8.85233 9.50975 9.69138 10.96862 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.004017 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.118556 B = 6968.857985 C = 7340.887816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.115 4.115 12 C 0.026 3.974 13 N -0.486 5.486 14 C 0.047 3.953 15 H 0.115 0.885 16 C -0.121 4.121 17 C 0.105 3.895 18 N -0.615 5.615 19 C 0.137 3.863 20 C 0.458 3.542 21 O -0.505 6.505 22 O -0.518 6.518 23 C 0.494 3.506 24 O -0.494 6.494 25 C 0.036 3.964 26 H 0.265 0.735 27 H 0.378 0.622 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.410 0.590 39 H 0.069 0.931 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 -18.697 5.561 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.101 4.101 13 N -0.210 5.210 14 C -0.066 4.066 15 H 0.133 0.867 16 C -0.159 4.159 17 C -0.018 4.018 18 N -0.353 5.353 19 C 0.012 3.988 20 C 0.298 3.702 21 O -0.392 6.392 22 O -0.330 6.330 23 C 0.280 3.720 24 O -0.365 6.365 25 C -0.091 4.091 26 H 0.075 0.925 27 H 0.228 0.772 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.268 0.732 39 H 0.088 0.912 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.109 -18.396 5.475 19.225 hybrid contribution -0.133 0.529 -0.908 1.059 sum -1.243 -17.866 4.567 18.483 Atomic orbital electron populations 1.69676 1.05923 1.27211 1.51233 1.25008 0.94972 0.99351 0.94034 0.86484 0.79862 0.82839 0.78144 1.20617 1.21224 1.19794 1.21750 0.93524 0.90757 1.50518 0.92070 1.19244 0.86409 0.91169 0.82331 1.86201 1.51819 1.54315 1.47024 1.22989 1.00899 0.90911 1.00588 1.23426 0.88036 0.99765 0.98876 1.65136 1.22562 1.02076 1.31191 1.22731 0.98613 0.91174 0.94118 0.86723 1.22673 1.02465 0.93991 0.96810 1.22156 0.97439 0.98339 0.83878 1.48151 1.40836 1.23146 1.23149 1.20671 0.90178 0.92113 0.95863 1.24349 0.86392 0.80306 0.79126 1.90729 1.16222 1.68885 1.63345 1.84522 1.45073 1.47079 1.56323 1.22334 0.82813 0.79997 0.86830 1.90818 1.61246 1.61634 1.22845 1.23074 1.00103 0.95980 0.89918 0.92499 0.77238 0.91422 0.91716 0.94588 0.91627 0.88697 0.89064 0.90286 0.90938 0.86104 0.85698 0.73150 0.91240 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 10.87 55.43 0.60 -24.19 16 2 C 0.07 1.85 5.26 -17.82 -0.09 1.75 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.72 8.11 -34.44 -0.28 -15.00 16 8 H 0.06 1.70 7.34 -52.49 -0.39 1.32 16 9 C 0.25 6.52 0.99 -90.42 -0.09 6.43 16 10 O -0.59 -16.53 12.92 -35.23 -0.46 -16.98 16 11 C -0.12 -2.75 5.42 -24.78 -0.13 -2.89 16 12 C 0.03 0.52 5.58 -1.81 -0.01 0.51 16 13 N -0.49 -9.48 5.33 -222.41 -1.18 -10.66 16 14 C 0.05 0.74 3.04 -67.72 -0.21 0.54 16 15 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 16 C -0.12 -1.32 6.68 -25.09 -0.17 -1.49 16 17 C 0.10 0.99 7.35 -3.12 -0.02 0.97 16 18 N -0.62 -7.97 2.42 -173.78 -0.42 -8.39 16 19 C 0.14 1.43 6.52 -5.19 -0.03 1.39 16 20 C 0.46 5.30 8.40 36.01 0.30 5.60 16 21 O -0.51 -7.69 17.19 -18.74 -0.32 -8.01 16 22 O -0.52 -4.42 13.42 -39.26 -0.53 -4.94 16 23 C 0.49 8.64 5.65 -10.86 -0.06 8.57 16 24 O -0.49 -10.98 14.72 5.55 0.08 -10.90 16 25 C 0.04 0.84 5.80 -2.75 -0.02 0.83 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.38 10.70 7.18 45.56 0.33 11.03 16 28 H 0.07 1.68 7.86 -51.93 -0.41 1.28 16 29 H 0.06 1.62 8.01 -51.93 -0.42 1.20 16 30 H 0.04 0.75 6.19 -51.93 -0.32 0.42 16 31 H 0.07 1.11 7.19 -51.92 -0.37 0.74 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.01 6.48 -51.93 -0.34 0.67 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.13 1.40 7.93 -51.93 -0.41 0.99 16 38 H 0.41 1.89 9.10 45.56 0.41 2.31 16 39 H 0.07 1.74 5.20 -51.93 -0.27 1.47 16 40 H 0.08 1.77 7.39 -51.93 -0.38 1.39 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -35.44 325.41 -6.97 -42.40 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -3.81 Total: 13.29 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -0.81 Total: 7.22 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -1.00 Total: -43.25 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -1.22 Total: -40.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.44 -6.97 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.451 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds