Wall clock time and date at job start Fri Apr 10 2020 17:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99689 * 2 1 4 4 H 1.48498 * 109.47231 * 264.77459 * 3 2 1 5 5 H 1.48496 * 109.47507 * 24.77461 * 3 2 1 6 6 H 1.48505 * 109.46987 * 144.77864 * 3 2 1 7 7 C 1.37874 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00097 * 6.03785 * 7 2 1 9 9 C 1.50699 * 120.00254 * 186.03823 * 7 2 1 10 10 O 1.42905 * 110.27321 * 61.54734 * 9 7 2 11 11 C 1.54590 * 110.39218 * 183.69517 * 9 7 2 12 12 C 1.54942 * 102.92161 * 140.91893 * 11 9 7 13 13 N 1.48533 * 103.22462 * 322.58283 * 12 11 9 14 14 C 1.46900 * 111.00191 * 159.72334 * 13 12 11 15 15 H 1.09001 * 110.43341 * 295.06400 * 14 13 12 16 16 C 1.54621 * 110.48659 * 57.59999 * 14 13 12 17 17 C 1.54482 * 101.76631 * 143.61004 * 16 14 13 18 18 N 1.46764 * 105.47133 * 334.58907 * 17 16 14 19 19 C 1.46497 * 124.34976 * 197.01800 * 18 17 16 20 20 C 1.50703 * 109.47328 * 89.99429 * 19 18 17 21 21 O 1.20823 * 120.00142 * 0.02562 * 20 19 18 22 22 O 1.34231 * 119.99619 * 179.97438 * 20 19 18 23 23 C 1.34420 * 111.30411 * 17.27465 * 18 17 16 24 24 O 1.21272 * 124.94370 * 179.30796 * 23 18 17 25 25 C 1.47905 * 105.81981 * 39.20880 * 13 12 11 26 26 H 0.97001 * 120.00309 * 359.97438 * 1 2 3 27 27 H 0.96695 * 113.99543 * 57.91331 * 10 9 7 28 28 H 1.09004 * 110.72433 * 259.27040 * 11 9 7 29 29 H 1.08989 * 110.72856 * 22.55733 * 11 9 7 30 30 H 1.08995 * 110.66467 * 204.15007 * 12 11 9 31 31 H 1.08997 * 110.67286 * 81.01734 * 12 11 9 32 32 H 1.09000 * 110.97126 * 25.49295 * 16 14 13 33 33 H 1.08999 * 111.00686 * 261.74419 * 16 14 13 34 34 H 1.09000 * 110.24733 * 215.58530 * 17 16 14 35 35 H 1.09004 * 110.31732 * 93.62382 * 17 16 14 36 36 H 1.09003 * 109.47524 * 210.00067 * 19 18 17 37 37 H 1.09005 * 109.47341 * 329.99661 * 19 18 17 38 38 H 0.96700 * 116.99581 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.91823 * 94.02291 * 25 13 12 40 40 H 1.09000 * 109.91635 * 215.31483 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6070 1.9827 -1.3942 5 1 1.3957 2.6820 0.5867 6 1 3.4871 1.4746 0.8075 7 6 2.0046 -1.1940 -0.0005 8 1 1.4691 -2.1267 -0.0993 9 6 3.5053 -1.1977 0.1367 10 8 3.8895 -0.6236 1.3878 11 6 4.0537 -2.6380 0.0162 12 6 5.3539 -2.4462 -0.8044 13 7 4.9886 -1.3841 -1.7764 14 6 6.1877 -0.7286 -2.3152 15 1 6.7184 -0.1972 -1.5251 16 6 7.1161 -1.7664 -2.9873 17 6 7.6714 -0.9637 -4.1846 18 7 6.6616 0.0624 -4.4701 19 6 6.5826 0.8186 -5.7224 20 6 5.6999 0.0837 -6.6981 21 8 5.1889 -0.9639 -6.3800 22 8 5.4807 0.5936 -7.9203 23 6 5.8219 0.2232 -3.4328 24 8 4.9034 1.0143 -3.3989 25 6 4.1504 -0.4230 -1.0273 26 1 -0.4850 0.8400 0.0004 27 1 3.5127 -1.0709 2.1579 28 1 4.2762 -3.0497 1.0007 29 1 3.3500 -3.2752 -0.5193 30 1 5.6208 -3.3670 -1.3229 31 1 6.1694 -2.1153 -0.1614 32 1 6.5500 -2.6334 -3.3279 33 1 7.9184 -2.0671 -2.3135 34 1 7.8012 -1.6158 -5.0483 35 1 8.6198 -0.4961 -3.9197 36 1 6.1636 1.8053 -5.5252 37 1 7.5814 0.9260 -6.1457 38 1 4.9073 0.0865 -8.5111 39 1 4.7697 0.3849 -0.6377 40 1 3.3757 -0.0192 -1.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:37 Heat of formation + Delta-G solvation = -138.005095 kcal Electronic energy + Delta-G solvation = -25690.727448 eV Core-core repulsion = 21892.560602 eV Total energy + Delta-G solvation = -3798.166846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.94156 -39.92755 -38.26392 -36.46655 -36.14537 -35.01718 -32.57642 -32.20035 -29.74424 -28.45723 -27.79540 -26.35500 -23.98606 -22.52499 -22.05304 -20.60355 -19.62466 -19.07267 -18.33548 -17.30041 -17.01352 -16.73886 -16.43124 -16.05021 -15.37175 -15.05255 -14.67764 -14.31561 -13.88000 -13.80557 -13.62705 -13.22897 -12.84337 -12.75134 -12.59630 -12.42489 -12.27566 -11.91032 -11.76390 -11.63657 -11.44408 -11.18296 -11.02429 -10.82570 -10.73472 -10.17875 -10.00581 -9.91732 -9.58176 -8.99182 -8.88749 -8.55303 -8.29222 -7.93518 -6.05453 -4.14311 2.05006 2.26186 2.81447 3.13262 3.50570 3.62074 3.74235 4.21555 4.30660 4.50151 4.59926 4.73720 4.90603 4.97054 5.02998 5.11044 5.25701 5.29081 5.33301 5.42223 5.59743 5.72756 5.79811 5.92917 5.99931 6.14569 6.26785 6.27682 6.33266 6.57335 6.76979 6.90771 6.97658 7.20788 7.41727 7.53621 7.71370 7.72475 8.23040 8.36098 8.91388 9.06376 9.59749 11.05094 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.005442 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.404589 B = 5143.827586 C = 5935.806004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.088 3.912 3 Si 0.864 3.136 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.233 1.233 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.210 3.790 10 O -0.581 6.581 11 C -0.134 4.134 12 C 0.039 3.961 13 N -0.493 5.493 14 C 0.044 3.956 15 H 0.078 0.922 16 C -0.123 4.123 17 C 0.110 3.890 18 N -0.614 5.614 19 C 0.140 3.860 20 C 0.453 3.547 21 O -0.494 6.494 22 O -0.520 6.520 23 C 0.535 3.465 24 O -0.501 6.501 25 C 0.052 3.948 26 H 0.265 0.735 27 H 0.364 0.636 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.411 0.589 39 H 0.035 0.965 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.780 -1.625 -10.886 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.116 4.116 3 Si 0.691 3.309 4 H -0.197 1.197 5 H -0.228 1.228 6 H -0.156 1.156 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.170 3.830 10 O -0.388 6.388 11 C -0.172 4.172 12 C -0.088 4.088 13 N -0.218 5.218 14 C -0.068 4.068 15 H 0.096 0.904 16 C -0.161 4.161 17 C -0.013 4.013 18 N -0.351 5.351 19 C 0.016 3.984 20 C 0.292 3.708 21 O -0.379 6.379 22 O -0.333 6.333 23 C 0.322 3.678 24 O -0.372 6.372 25 C -0.075 4.075 26 H 0.074 0.926 27 H 0.210 0.790 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.270 0.730 39 H 0.054 0.946 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.268 -0.923 -11.402 22.408 hybrid contribution -0.007 0.500 0.339 0.604 sum 19.261 -0.423 -11.063 22.217 Atomic orbital electron populations 1.69940 1.06626 1.27370 1.48804 1.24961 0.94578 0.99594 0.92513 0.87192 0.81652 0.82487 0.79600 1.19744 1.22763 1.15627 1.21317 0.89042 0.94953 1.52950 0.90540 1.19884 0.94218 0.87469 0.81410 1.86475 1.75402 1.60650 1.16251 1.23060 0.95559 0.99930 0.98685 1.23205 0.97805 0.94745 0.93078 1.64860 1.12828 1.10914 1.33227 1.22448 0.93465 0.94992 0.95933 0.90430 1.22699 0.98808 0.98522 0.96091 1.22098 0.90675 0.89501 0.99051 1.47859 1.32707 1.40932 1.13600 1.20640 1.00059 0.95495 0.82245 1.24256 0.80481 0.84595 0.81503 1.90796 1.47070 1.23205 1.76841 1.84495 1.66852 1.55805 1.26105 1.20799 0.80449 0.82942 0.83637 1.90781 1.28119 1.37490 1.80823 1.23292 0.96303 0.93124 0.94810 0.92594 0.78969 0.91876 0.90374 0.90777 0.94192 0.88497 0.89194 0.90318 0.90732 0.85739 0.86001 0.73033 0.94632 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.26 13.96 55.43 0.77 -27.49 16 2 C 0.09 2.66 5.39 -17.82 -0.10 2.57 16 3 Si 0.86 23.62 23.84 -169.99 -4.05 19.57 16 4 H -0.27 -7.69 6.95 56.52 0.39 -7.30 16 5 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 6 H -0.23 -6.21 5.41 56.52 0.31 -5.90 16 7 C -0.55 -15.78 8.67 -34.44 -0.30 -16.08 16 8 H 0.08 2.37 7.83 -52.48 -0.41 1.96 16 9 C 0.21 5.10 0.84 -90.42 -0.08 5.02 16 10 O -0.58 -13.57 10.44 -35.23 -0.37 -13.94 16 11 C -0.13 -2.68 6.34 -24.87 -0.16 -2.84 16 12 C 0.04 0.67 5.74 -1.90 -0.01 0.66 16 13 N -0.49 -9.87 5.10 -222.51 -1.13 -11.01 16 14 C 0.04 0.71 2.37 -67.72 -0.16 0.55 16 15 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 16 C -0.12 -1.35 5.88 -25.10 -0.15 -1.50 16 17 C 0.11 1.00 7.35 -3.12 -0.02 0.97 16 18 N -0.61 -7.87 2.42 -173.78 -0.42 -8.29 16 19 C 0.14 1.41 6.53 -5.19 -0.03 1.38 16 20 C 0.45 5.49 8.40 36.01 0.30 5.80 16 21 O -0.49 -8.20 17.19 -18.75 -0.32 -8.52 16 22 O -0.52 -4.69 13.42 -39.26 -0.53 -5.22 16 23 C 0.53 9.55 7.63 -10.86 -0.08 9.47 16 24 O -0.50 -11.36 16.08 5.56 0.09 -11.27 16 25 C 0.05 1.25 3.00 -2.75 -0.01 1.24 16 26 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 27 H 0.36 7.36 9.07 45.56 0.41 7.77 16 28 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 29 H 0.08 1.64 7.71 -51.94 -0.40 1.24 16 30 H 0.07 1.07 7.83 -51.93 -0.41 0.67 16 31 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 32 H 0.10 1.18 7.87 -51.93 -0.41 0.77 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.12 1.27 7.92 -51.93 -0.41 0.86 16 37 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.41 2.24 9.10 45.56 0.41 2.66 16 39 H 0.04 0.88 6.59 -51.93 -0.34 0.53 16 40 H 0.10 2.78 5.34 -51.93 -0.28 2.51 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -40.08 324.21 -5.88 -45.96 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.01 Total: 8.09 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -0.79 Total: 7.24 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.78 Total: -46.79 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.13 Total: -38.95 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.05 Total: 19.57 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -40.08 -5.88 -45.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.048 kcal (2) G-P(sol) polarization free energy of solvation -40.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds