Wall clock time and date at job start Fri Apr 10 2020 17:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99689 * 2 1 4 4 H 1.48498 * 109.47231 * 264.77459 * 3 2 1 5 5 H 1.48496 * 109.47507 * 24.77461 * 3 2 1 6 6 H 1.48505 * 109.46987 * 144.77864 * 3 2 1 7 7 C 1.37874 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00097 * 6.03785 * 7 2 1 9 9 C 1.50699 * 120.00254 * 186.03823 * 7 2 1 10 10 O 1.42905 * 110.27321 * 61.54734 * 9 7 2 11 11 C 1.54590 * 110.39218 * 183.69517 * 9 7 2 12 12 C 1.54942 * 102.92161 * 140.91893 * 11 9 7 13 13 N 1.48533 * 103.22462 * 322.58283 * 12 11 9 14 14 C 1.46900 * 111.00191 * 159.72334 * 13 12 11 15 15 H 1.09001 * 110.43341 * 295.06400 * 14 13 12 16 16 C 1.54621 * 110.48659 * 57.59999 * 14 13 12 17 17 C 1.54482 * 101.76631 * 143.61004 * 16 14 13 18 18 N 1.46764 * 105.47133 * 334.58907 * 17 16 14 19 19 C 1.46497 * 124.34976 * 197.01800 * 18 17 16 20 20 C 1.50703 * 109.47328 * 89.99429 * 19 18 17 21 21 O 1.20823 * 120.00142 * 0.02562 * 20 19 18 22 22 O 1.34231 * 119.99619 * 179.97438 * 20 19 18 23 23 C 1.34420 * 111.30411 * 17.27465 * 18 17 16 24 24 O 1.21272 * 124.94370 * 179.30796 * 23 18 17 25 25 C 1.47905 * 105.81981 * 39.20880 * 13 12 11 26 26 H 0.97001 * 120.00309 * 359.97438 * 1 2 3 27 27 H 0.96695 * 113.99543 * 57.91331 * 10 9 7 28 28 H 1.09004 * 110.72433 * 259.27040 * 11 9 7 29 29 H 1.08989 * 110.72856 * 22.55733 * 11 9 7 30 30 H 1.08995 * 110.66467 * 204.15007 * 12 11 9 31 31 H 1.08997 * 110.67286 * 81.01734 * 12 11 9 32 32 H 1.09000 * 110.97126 * 25.49295 * 16 14 13 33 33 H 1.08999 * 111.00686 * 261.74419 * 16 14 13 34 34 H 1.09000 * 110.24733 * 215.58530 * 17 16 14 35 35 H 1.09004 * 110.31732 * 93.62382 * 17 16 14 36 36 H 1.09003 * 109.47524 * 210.00067 * 19 18 17 37 37 H 1.09005 * 109.47341 * 329.99661 * 19 18 17 38 38 H 0.96700 * 116.99581 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.91823 * 94.02291 * 25 13 12 40 40 H 1.09000 * 109.91635 * 215.31483 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6070 1.9827 -1.3942 5 1 1.3957 2.6820 0.5867 6 1 3.4871 1.4746 0.8075 7 6 2.0046 -1.1940 -0.0005 8 1 1.4691 -2.1267 -0.0993 9 6 3.5053 -1.1977 0.1367 10 8 3.8895 -0.6236 1.3878 11 6 4.0537 -2.6380 0.0162 12 6 5.3539 -2.4462 -0.8044 13 7 4.9886 -1.3841 -1.7764 14 6 6.1877 -0.7286 -2.3152 15 1 6.7184 -0.1972 -1.5251 16 6 7.1161 -1.7664 -2.9873 17 6 7.6714 -0.9637 -4.1846 18 7 6.6616 0.0624 -4.4701 19 6 6.5826 0.8186 -5.7224 20 6 5.6999 0.0837 -6.6981 21 8 5.1889 -0.9639 -6.3800 22 8 5.4807 0.5936 -7.9203 23 6 5.8219 0.2232 -3.4328 24 8 4.9034 1.0143 -3.3989 25 6 4.1504 -0.4230 -1.0273 26 1 -0.4850 0.8400 0.0004 27 1 3.5127 -1.0709 2.1579 28 1 4.2762 -3.0497 1.0007 29 1 3.3500 -3.2752 -0.5193 30 1 5.6208 -3.3670 -1.3229 31 1 6.1694 -2.1153 -0.1614 32 1 6.5500 -2.6334 -3.3279 33 1 7.9184 -2.0671 -2.3135 34 1 7.8012 -1.6158 -5.0483 35 1 8.6198 -0.4961 -3.9197 36 1 6.1636 1.8053 -5.5252 37 1 7.5814 0.9260 -6.1457 38 1 4.9073 0.0865 -8.5111 39 1 4.7697 0.3849 -0.6377 40 1 3.3757 -0.0192 -1.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:36 Heat of formation + Delta-G solvation = -175.270861 kcal Electronic energy + Delta-G solvation = -25692.343413 eV Core-core repulsion = 21892.560602 eV Total energy + Delta-G solvation = -3799.782811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03477 -41.00637 -39.85826 -37.66707 -37.16508 -36.58691 -34.53443 -33.70705 -31.13691 -30.17826 -28.85669 -27.69875 -25.91829 -23.51718 -23.21387 -21.99033 -21.28850 -20.32935 -19.25603 -19.13416 -18.30085 -17.94904 -17.46337 -17.24457 -16.98376 -16.61345 -16.22049 -15.69591 -15.39059 -15.15996 -14.88333 -14.80331 -14.38104 -14.09305 -13.92857 -13.84147 -13.52871 -13.41218 -13.28798 -13.04050 -12.66924 -12.58925 -12.46341 -12.15775 -12.06687 -11.93560 -11.90408 -11.81066 -11.02160 -10.89810 -10.82590 -10.25955 -9.96969 -9.42989 -8.43121 -6.51987 1.10907 1.19220 1.27170 1.37504 1.50444 1.77928 2.27325 2.30173 2.92851 2.99660 3.20467 3.56636 3.67100 3.93968 4.03764 4.08162 4.10809 4.22819 4.25040 4.25999 4.33937 4.45399 4.52518 4.66323 4.73952 4.95433 4.97675 5.05639 5.17984 5.30365 5.33561 5.38913 5.55878 5.59051 5.81754 5.88392 6.04901 6.07962 6.58360 6.88527 7.03473 7.15816 7.31364 8.71461 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.005442 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.404589 B = 5143.827586 C = 5935.806004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.039 3.961 3 Si 0.924 3.076 4 H -0.295 1.295 5 H -0.297 1.297 6 H -0.218 1.218 7 C -0.542 4.542 8 H 0.043 0.957 9 C 0.205 3.795 10 O -0.582 6.582 11 C -0.131 4.131 12 C 0.050 3.950 13 N -0.514 5.514 14 C 0.035 3.965 15 H 0.088 0.912 16 C -0.112 4.112 17 C 0.107 3.893 18 N -0.607 5.607 19 C 0.133 3.867 20 C 0.457 3.543 21 O -0.547 6.547 22 O -0.509 6.509 23 C 0.516 3.484 24 O -0.570 6.570 25 C 0.066 3.934 26 H 0.266 0.734 27 H 0.378 0.622 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.180 0.820 38 H 0.426 0.574 39 H 0.026 0.974 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.364 -2.393 -11.316 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.161 4.161 3 Si 0.751 3.249 4 H -0.223 1.223 5 H -0.224 1.224 6 H -0.140 1.140 7 C -0.580 4.580 8 H 0.061 0.939 9 C 0.164 3.836 10 O -0.390 6.390 11 C -0.169 4.169 12 C -0.076 4.076 13 N -0.240 5.240 14 C -0.077 4.077 15 H 0.105 0.895 16 C -0.150 4.150 17 C -0.014 4.014 18 N -0.341 5.341 19 C 0.010 3.990 20 C 0.298 3.702 21 O -0.437 6.437 22 O -0.322 6.322 23 C 0.304 3.696 24 O -0.447 6.447 25 C -0.062 4.062 26 H 0.075 0.925 27 H 0.226 0.774 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.150 0.850 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.197 0.803 38 H 0.288 0.712 39 H 0.044 0.956 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 23.919 -1.723 -11.863 26.755 hybrid contribution -1.423 0.676 0.340 1.612 sum 22.496 -1.047 -11.523 25.297 Atomic orbital electron populations 1.70044 1.07967 1.28028 1.51337 1.25639 0.95099 1.02503 0.92855 0.86265 0.81020 0.79380 0.78208 1.22281 1.22439 1.14003 1.21706 0.92052 0.93256 1.50995 0.93851 1.19827 0.91259 0.90645 0.81830 1.86409 1.75050 1.61202 1.16353 1.22982 0.96715 0.96487 1.00766 1.23271 0.96526 0.95164 0.92684 1.64712 1.15110 1.10751 1.33388 1.22680 0.92677 0.96439 0.95928 0.89471 1.22794 0.98483 0.96682 0.97003 1.22495 0.90923 0.88941 0.99057 1.47996 1.31916 1.41018 1.13158 1.21063 1.02652 0.94361 0.80969 1.24654 0.79617 0.83737 0.82155 1.90784 1.49314 1.25689 1.77930 1.84463 1.66853 1.55561 1.25355 1.21331 0.80214 0.82535 0.85497 1.90740 1.31220 1.40313 1.82433 1.22790 0.95700 0.93790 0.93893 0.92546 0.77370 0.89067 0.92254 0.87357 0.91680 0.89740 0.84980 0.88471 0.86304 0.86298 0.80267 0.71209 0.95583 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.85 13.96 21.45 0.30 -61.55 16 2 C 0.04 2.45 5.39 84.65 0.46 2.91 16 3 Si 0.92 51.41 23.84 68.60 1.64 53.04 16 4 H -0.30 -17.52 6.95 99.48 0.69 -16.82 16 5 H -0.30 -16.10 7.11 99.48 0.71 -15.39 16 6 H -0.22 -11.41 5.41 99.48 0.54 -10.88 16 7 C -0.54 -32.50 8.67 25.60 0.22 -32.28 16 8 H 0.04 2.82 7.83 -2.91 -0.02 2.80 16 9 C 0.20 9.92 0.84 -10.66 -0.01 9.92 16 10 O -0.58 -26.37 10.44 -148.98 -1.55 -27.92 16 11 C -0.13 -5.04 6.34 31.80 0.20 -4.84 16 12 C 0.05 1.54 5.74 86.65 0.50 2.03 16 13 N -0.51 -20.05 5.10 -857.90 -4.37 -24.43 16 14 C 0.03 1.05 2.37 44.91 0.11 1.16 16 15 H 0.09 2.44 7.92 -2.39 -0.02 2.43 16 16 C -0.11 -1.95 5.88 31.65 0.19 -1.76 16 17 C 0.11 1.41 7.35 86.83 0.64 2.05 16 18 N -0.61 -14.07 2.42 -822.30 -1.99 -16.06 16 19 C 0.13 2.35 6.53 85.63 0.56 2.91 16 20 C 0.46 10.49 8.40 71.24 0.60 11.09 16 21 O -0.55 -18.07 17.19 21.97 0.38 -17.69 16 22 O -0.51 -8.30 13.42 -51.42 -0.69 -8.99 16 23 C 0.52 18.23 7.63 87.90 0.67 18.90 16 24 O -0.57 -27.06 16.08 -3.00 -0.05 -27.11 16 25 C 0.07 3.27 3.00 86.45 0.26 3.52 16 26 H 0.27 16.65 8.31 -92.71 -0.77 15.88 16 27 H 0.38 14.65 9.07 -74.06 -0.67 13.98 16 28 H 0.09 2.95 8.08 -2.38 -0.02 2.93 16 29 H 0.06 2.48 7.71 -2.39 -0.02 2.46 16 30 H 0.11 2.64 7.83 -2.39 -0.02 2.62 16 31 H 0.06 1.72 8.02 -2.39 -0.02 1.70 16 32 H 0.08 1.73 7.87 -2.39 -0.02 1.71 16 33 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 2.31 7.92 -2.39 -0.02 2.29 16 37 H 0.18 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.43 4.07 9.10 -74.06 -0.67 3.39 16 39 H 0.03 1.30 6.59 -2.39 -0.02 1.28 16 40 H 0.05 2.76 5.34 -2.39 -0.01 2.75 16 Total: -1.00 -95.70 324.21 -2.40 -98.10 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.44 Total: 17.00 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 4.39 Total: 15.61 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -6.06 Total: -102.03 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -1.92 Total: -81.71 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 1.64 Total: 53.04 kcal Total: -95.70 -2.40 -98.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.176 kcal (2) G-P(sol) polarization free energy of solvation -95.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds