Wall clock time and date at job start Fri Apr 10 2020 17:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47244 * 299.99735 * 3 2 1 6 6 H 1.48493 * 109.47120 * 60.00067 * 3 2 1 7 7 C 1.37876 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99950 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.28902 * 60.66917 * 9 7 2 11 11 C 1.54257 * 110.32263 * 298.54254 * 9 7 2 12 12 C 1.54379 * 105.06256 * 241.00435 * 11 9 7 13 13 N 1.48562 * 104.69842 * 336.08765 * 12 11 9 14 14 C 1.46894 * 111.00344 * 159.09785 * 13 12 11 15 15 H 1.08998 * 110.43625 * 188.78811 * 14 13 12 16 16 C 1.54628 * 110.48612 * 66.10067 * 14 13 12 17 17 C 1.54484 * 101.76920 * 266.12475 * 16 14 13 18 18 N 1.46770 * 105.46835 * 334.58262 * 17 16 14 19 19 C 1.46498 * 124.34602 * 197.04181 * 18 17 16 20 20 C 1.50701 * 109.46930 * 269.99968 * 19 18 17 21 21 O 1.20831 * 119.99736 * 359.97438 * 20 19 18 22 22 O 1.34222 * 120.00267 * 180.02562 * 20 19 18 23 23 C 1.34419 * 111.30227 * 17.01688 * 18 17 16 24 24 O 1.21274 * 124.94021 * 179.63030 * 23 18 17 25 25 C 1.48856 * 104.07618 * 39.46842 * 13 12 11 26 26 H 0.96998 * 120.00501 * 359.97438 * 1 2 3 27 27 H 0.96698 * 114.00379 * 299.32720 * 10 9 7 28 28 H 1.08998 * 110.32238 * 122.10808 * 11 9 7 29 29 H 1.08997 * 110.41265 * 359.94335 * 11 9 7 30 30 H 1.09002 * 110.41258 * 94.92615 * 12 11 9 31 31 H 1.09002 * 110.41328 * 217.24846 * 12 11 9 32 32 H 1.09006 * 110.96824 * 24.23887 * 16 14 13 33 33 H 1.09001 * 110.97195 * 147.99824 * 16 14 13 34 34 H 1.08999 * 110.24304 * 215.58111 * 17 16 14 35 35 H 1.08998 * 110.32177 * 93.62106 * 17 16 14 36 36 H 1.09002 * 109.47507 * 29.99823 * 19 18 17 37 37 H 1.08996 * 109.47204 * 150.00130 * 19 18 17 38 38 H 0.96704 * 117.00413 * 179.97438 * 22 20 19 39 39 H 1.09003 * 110.39541 * 201.75499 * 25 13 12 40 40 H 1.08998 * 110.39292 * 79.33352 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.4351 -2.6002 -1.1683 11 6 0.3841 -2.6172 1.2710 12 6 0.9154 -3.8674 2.0045 13 7 1.5511 -4.6868 0.9408 14 6 2.5142 -5.6369 1.5129 15 1 3.0856 -6.1225 0.7218 16 6 1.7862 -6.6884 2.3820 17 6 1.8863 -6.0582 3.7889 18 7 3.0697 -5.1910 3.7461 19 6 3.7581 -4.6730 4.9309 20 6 3.1541 -3.3496 5.3244 21 8 2.2424 -2.8865 4.6807 22 8 3.6295 -2.6849 6.3892 23 6 3.4409 -4.9336 2.4801 24 8 4.3822 -4.2393 2.1598 25 6 2.2333 -3.6879 0.0733 26 1 -0.4851 0.8400 0.0004 27 1 -0.2318 -1.9041 -1.2439 28 1 -0.6638 -2.7523 1.0030 29 1 0.5032 -1.7323 1.8961 30 1 1.6517 -3.5828 2.7562 31 1 0.0939 -4.4150 2.4664 32 1 0.7455 -6.7948 2.0755 33 1 2.3016 -7.6481 2.3469 34 1 2.0152 -6.8355 4.5421 35 1 0.9947 -5.4693 4.0043 36 1 3.6494 -5.3807 5.7528 37 1 4.8159 -4.5371 4.7061 38 1 3.2102 -1.8399 6.6023 39 1 2.4038 -4.1015 -0.9207 40 1 3.1758 -3.3753 0.5227 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:40 Heat of formation + Delta-G solvation = -146.212791 kcal Electronic energy + Delta-G solvation = -26367.843755 eV Core-core repulsion = 22569.320996 eV Total energy + Delta-G solvation = -3798.522759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15641 -39.87507 -37.61897 -36.44494 -36.04018 -34.63308 -32.30183 -32.00753 -29.39530 -27.91507 -27.70999 -26.25920 -24.20184 -22.47199 -21.67863 -20.57445 -19.32192 -18.96643 -18.19834 -17.19773 -16.94495 -16.58771 -16.27731 -15.77549 -15.37125 -14.77095 -14.48304 -14.18041 -13.84797 -13.74219 -13.18974 -13.13735 -12.93856 -12.63694 -12.32784 -12.22743 -11.80800 -11.59219 -11.48012 -11.40134 -11.19500 -10.93307 -10.76768 -10.66534 -10.44745 -10.36267 -10.17451 -10.09355 -9.61551 -9.01817 -8.87391 -8.48309 -8.01718 -7.72811 -6.10120 -4.16708 2.18036 2.39384 2.76812 3.27240 3.27862 3.35444 3.42284 4.26911 4.40170 4.47544 4.63119 4.83700 4.97657 5.03086 5.08557 5.17076 5.21246 5.39565 5.66344 5.78274 5.85484 6.00208 6.11628 6.15462 6.30279 6.34458 6.58547 6.68050 6.69546 6.95183 7.03127 7.15746 7.40531 7.59323 7.62145 7.70339 7.87031 7.91748 8.20843 8.32953 8.86416 9.50822 9.65797 10.96907 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.006514 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.772560 B = 4297.168904 C = 5345.802057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.255 3.745 10 O -0.586 6.586 11 C -0.114 4.114 12 C 0.013 3.987 13 N -0.482 5.482 14 C 0.044 3.956 15 H 0.112 0.888 16 C -0.122 4.122 17 C 0.100 3.900 18 N -0.611 5.611 19 C 0.138 3.862 20 C 0.447 3.553 21 O -0.483 6.483 22 O -0.522 6.522 23 C 0.499 3.501 24 O -0.514 6.514 25 C 0.039 3.961 26 H 0.265 0.735 27 H 0.378 0.622 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.411 0.589 39 H 0.073 0.927 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -12.954 12.855 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.214 3.786 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.115 4.115 13 N -0.206 5.206 14 C -0.069 4.069 15 H 0.130 0.870 16 C -0.160 4.160 17 C -0.023 4.023 18 N -0.348 5.348 19 C 0.013 3.987 20 C 0.286 3.714 21 O -0.368 6.368 22 O -0.334 6.334 23 C 0.285 3.715 24 O -0.386 6.386 25 C -0.088 4.088 26 H 0.074 0.926 27 H 0.228 0.772 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.270 0.730 39 H 0.092 0.908 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.927 -13.529 12.031 18.525 hybrid contribution 0.314 2.630 0.971 2.821 sum 4.241 -10.899 13.002 17.488 Atomic orbital electron populations 1.69718 1.05812 1.27082 1.51002 1.24974 0.94971 0.99275 0.94056 0.86462 0.80309 0.83270 0.77540 1.19703 1.20786 1.21022 1.21750 0.93587 0.90827 1.50641 0.92229 1.19188 0.86565 0.90551 0.82259 1.86125 1.51957 1.55433 1.45970 1.22777 0.98909 0.94751 0.98873 1.23557 0.98804 0.95002 0.94093 1.65919 1.23330 1.15840 1.15523 1.22785 0.92916 0.95667 0.95511 0.86974 1.22635 1.03533 0.97365 0.92508 1.22274 0.88011 0.93009 0.98962 1.48136 1.31172 1.50338 1.05148 1.20655 0.98285 0.90220 0.89497 1.24263 0.81674 0.87801 0.77648 1.90817 1.27900 1.67350 1.50753 1.84466 1.63261 1.38596 1.47113 1.22205 0.84512 0.80893 0.83850 1.90724 1.29289 1.38148 1.80486 1.23348 0.97141 0.91895 0.96404 0.92553 0.77200 0.93044 0.91152 0.91418 0.92140 0.87920 0.89613 0.90310 0.90486 0.86188 0.85984 0.72958 0.90839 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.29 10.81 55.43 0.60 -24.69 16 2 C 0.07 1.95 5.02 -17.82 -0.09 1.86 16 3 Si 0.90 22.15 29.54 -169.99 -5.02 17.12 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.53 -15.44 8.08 -34.44 -0.28 -15.72 16 8 H 0.06 1.78 7.59 -52.49 -0.40 1.38 16 9 C 0.25 6.85 1.05 -90.39 -0.10 6.75 16 10 O -0.59 -16.29 12.94 -35.23 -0.46 -16.75 16 11 C -0.11 -2.89 5.55 -25.35 -0.14 -3.04 16 12 C 0.01 0.26 4.63 -2.18 -0.01 0.25 16 13 N -0.48 -9.66 5.40 -221.77 -1.20 -10.86 16 14 C 0.04 0.70 3.23 -67.72 -0.22 0.48 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 C -0.12 -1.32 6.52 -25.10 -0.16 -1.49 16 17 C 0.10 1.04 6.44 -3.12 -0.02 1.02 16 18 N -0.61 -8.11 1.94 -173.78 -0.34 -8.45 16 19 C 0.14 1.48 6.52 -5.19 -0.03 1.45 16 20 C 0.45 6.00 8.40 36.01 0.30 6.30 16 21 O -0.48 -8.80 14.89 -18.75 -0.28 -9.07 16 22 O -0.52 -5.41 13.42 -39.24 -0.53 -5.94 16 23 C 0.50 8.64 5.39 -10.86 -0.06 8.58 16 24 O -0.51 -10.95 15.97 5.56 0.09 -10.87 16 25 C 0.04 0.93 5.65 -2.01 -0.01 0.92 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 27 H 0.38 10.57 7.32 45.56 0.33 10.91 16 28 H 0.05 1.31 7.98 -51.93 -0.41 0.90 16 29 H 0.07 1.97 7.25 -51.93 -0.38 1.60 16 30 H 0.07 1.47 3.21 -51.93 -0.17 1.30 16 31 H 0.06 1.13 7.27 -51.93 -0.38 0.76 16 32 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.91 6.72 -51.93 -0.35 0.56 16 36 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.12 1.29 7.93 -51.93 -0.41 0.88 16 38 H 0.41 2.97 9.10 45.56 0.41 3.39 16 39 H 0.07 1.74 8.08 -51.93 -0.42 1.32 16 40 H 0.07 1.68 5.50 -51.93 -0.29 1.39 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -36.03 319.61 -6.82 -42.86 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -3.70 Total: 14.44 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.82 Total: 7.38 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.93 Total: -43.99 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.17 Total: -42.62 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.03 -6.82 -42.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.357 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds