Wall clock time and date at job start Fri Apr 10 2020 17:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47244 * 299.99735 * 3 2 1 6 6 H 1.48493 * 109.47120 * 60.00067 * 3 2 1 7 7 C 1.37876 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99950 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.28902 * 60.66917 * 9 7 2 11 11 C 1.54257 * 110.32263 * 298.54254 * 9 7 2 12 12 C 1.54379 * 105.06256 * 241.00435 * 11 9 7 13 13 N 1.48562 * 104.69842 * 336.08765 * 12 11 9 14 14 C 1.46894 * 111.00344 * 159.09785 * 13 12 11 15 15 H 1.08998 * 110.43625 * 188.78811 * 14 13 12 16 16 C 1.54628 * 110.48612 * 66.10067 * 14 13 12 17 17 C 1.54484 * 101.76920 * 266.12475 * 16 14 13 18 18 N 1.46770 * 105.46835 * 334.58262 * 17 16 14 19 19 C 1.46498 * 124.34602 * 197.04181 * 18 17 16 20 20 C 1.50701 * 109.46930 * 269.99968 * 19 18 17 21 21 O 1.20831 * 119.99736 * 359.97438 * 20 19 18 22 22 O 1.34222 * 120.00267 * 180.02562 * 20 19 18 23 23 C 1.34419 * 111.30227 * 17.01688 * 18 17 16 24 24 O 1.21274 * 124.94021 * 179.63030 * 23 18 17 25 25 C 1.48856 * 104.07618 * 39.46842 * 13 12 11 26 26 H 0.96998 * 120.00501 * 359.97438 * 1 2 3 27 27 H 0.96698 * 114.00379 * 299.32720 * 10 9 7 28 28 H 1.08998 * 110.32238 * 122.10808 * 11 9 7 29 29 H 1.08997 * 110.41265 * 359.94335 * 11 9 7 30 30 H 1.09002 * 110.41258 * 94.92615 * 12 11 9 31 31 H 1.09002 * 110.41328 * 217.24846 * 12 11 9 32 32 H 1.09006 * 110.96824 * 24.23887 * 16 14 13 33 33 H 1.09001 * 110.97195 * 147.99824 * 16 14 13 34 34 H 1.08999 * 110.24304 * 215.58111 * 17 16 14 35 35 H 1.08998 * 110.32177 * 93.62106 * 17 16 14 36 36 H 1.09002 * 109.47507 * 29.99823 * 19 18 17 37 37 H 1.08996 * 109.47204 * 150.00130 * 19 18 17 38 38 H 0.96704 * 117.00413 * 179.97438 * 22 20 19 39 39 H 1.09003 * 110.39541 * 201.75499 * 25 13 12 40 40 H 1.08998 * 110.39292 * 79.33352 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.4351 -2.6002 -1.1683 11 6 0.3841 -2.6172 1.2710 12 6 0.9154 -3.8674 2.0045 13 7 1.5511 -4.6868 0.9408 14 6 2.5142 -5.6369 1.5129 15 1 3.0856 -6.1225 0.7218 16 6 1.7862 -6.6884 2.3820 17 6 1.8863 -6.0582 3.7889 18 7 3.0697 -5.1910 3.7461 19 6 3.7581 -4.6730 4.9309 20 6 3.1541 -3.3496 5.3244 21 8 2.2424 -2.8865 4.6807 22 8 3.6295 -2.6849 6.3892 23 6 3.4409 -4.9336 2.4801 24 8 4.3822 -4.2393 2.1598 25 6 2.2333 -3.6879 0.0733 26 1 -0.4851 0.8400 0.0004 27 1 -0.2318 -1.9041 -1.2439 28 1 -0.6638 -2.7523 1.0030 29 1 0.5032 -1.7323 1.8961 30 1 1.6517 -3.5828 2.7562 31 1 0.0939 -4.4150 2.4664 32 1 0.7455 -6.7948 2.0755 33 1 2.3016 -7.6481 2.3469 34 1 2.0152 -6.8355 4.5421 35 1 0.9947 -5.4693 4.0043 36 1 3.6494 -5.3807 5.7528 37 1 4.8159 -4.5371 4.7061 38 1 3.2102 -1.8399 6.6023 39 1 2.4038 -4.1015 -0.9207 40 1 3.1758 -3.3753 0.5227 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:40 Heat of formation + Delta-G solvation = -177.795947 kcal Electronic energy + Delta-G solvation = -26369.213303 eV Core-core repulsion = 22569.320996 eV Total energy + Delta-G solvation = -3799.892307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36502 -40.99641 -39.40279 -37.70802 -37.13129 -36.34456 -34.23278 -33.60948 -30.95077 -29.71828 -28.88387 -27.70708 -26.17948 -23.48456 -22.99069 -21.96475 -21.34631 -20.22709 -19.21409 -19.09150 -18.26138 -17.92128 -17.37851 -17.11271 -16.85889 -16.63331 -16.09949 -15.67146 -15.34605 -15.02566 -14.94198 -14.54121 -14.20607 -14.01221 -13.65394 -13.46200 -13.42831 -13.26568 -13.11478 -12.90793 -12.63847 -12.57881 -12.48814 -12.33109 -12.07972 -12.02928 -11.86889 -11.68549 -11.27546 -11.08152 -10.66222 -10.17459 -9.93218 -9.37708 -8.28329 -6.43572 1.15038 1.24807 1.29271 1.30867 1.43397 1.72087 2.31100 2.33476 2.93528 2.95836 3.42439 3.51180 3.87476 3.98874 4.09751 4.10722 4.14984 4.21631 4.26546 4.38206 4.54899 4.58931 4.68611 4.72143 4.81441 5.01747 5.12024 5.16648 5.21457 5.35944 5.42710 5.52285 5.60068 5.64162 5.76771 5.87500 6.02105 6.18552 6.60943 6.89725 7.00968 7.27091 7.42673 8.77415 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.006514 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.772560 B = 4297.168904 C = 5345.802057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.038 0.962 9 C 0.240 3.760 10 O -0.592 6.592 11 C -0.106 4.106 12 C 0.025 3.975 13 N -0.475 5.475 14 C 0.030 3.970 15 H 0.118 0.882 16 C -0.107 4.107 17 C 0.094 3.906 18 N -0.603 5.603 19 C 0.133 3.867 20 C 0.449 3.551 21 O -0.541 6.541 22 O -0.510 6.510 23 C 0.488 3.512 24 O -0.569 6.569 25 C 0.048 3.952 26 H 0.270 0.730 27 H 0.373 0.627 28 H 0.043 0.957 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.064 0.936 36 H 0.179 0.821 37 H 0.124 0.876 38 H 0.424 0.576 39 H 0.069 0.931 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -14.983 14.908 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.170 4.170 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.601 4.601 8 H 0.056 0.944 9 C 0.200 3.800 10 O -0.400 6.400 11 C -0.145 4.145 12 C -0.102 4.102 13 N -0.200 5.200 14 C -0.082 4.082 15 H 0.136 0.864 16 C -0.145 4.145 17 C -0.027 4.027 18 N -0.337 5.337 19 C 0.009 3.991 20 C 0.291 3.709 21 O -0.430 6.430 22 O -0.323 6.323 23 C 0.275 3.725 24 O -0.446 6.446 25 C -0.080 4.080 26 H 0.080 0.920 27 H 0.222 0.778 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.082 0.918 36 H 0.196 0.804 37 H 0.142 0.858 38 H 0.286 0.714 39 H 0.088 0.912 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.908 -15.589 14.148 21.412 hybrid contribution 0.333 3.269 0.421 3.312 sum 4.241 -12.321 14.569 19.545 Atomic orbital electron populations 1.69778 1.06540 1.28109 1.50202 1.25653 0.95947 1.02089 0.93338 0.85559 0.78596 0.79526 0.78266 1.20417 1.19268 1.20063 1.21910 0.92839 0.92827 1.52490 0.94359 1.19386 0.87108 0.91074 0.82428 1.86111 1.51922 1.55135 1.46785 1.22533 0.98274 0.95557 0.98090 1.23420 0.99517 0.93566 0.93677 1.65862 1.24284 1.14602 1.15214 1.23058 0.92889 0.95665 0.96595 0.86395 1.22726 1.03585 0.97211 0.90982 1.22591 0.86285 0.93570 1.00252 1.48210 1.31398 1.49529 1.04590 1.21099 0.97692 0.90162 0.90101 1.24828 0.80582 0.88370 0.77134 1.90807 1.30685 1.68882 1.52651 1.84441 1.62743 1.39306 1.45830 1.22398 0.84067 0.80382 0.85656 1.90689 1.31744 1.40519 1.81662 1.23058 0.95768 0.92080 0.97054 0.92012 0.77760 0.93864 0.94783 0.91751 0.89253 0.87441 0.85557 0.84891 0.91780 0.80432 0.85841 0.71417 0.91215 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.28 10.81 21.45 0.23 -52.05 16 2 C 0.03 1.76 5.02 84.65 0.43 2.19 16 3 Si 0.96 46.37 29.54 68.60 2.03 48.39 16 4 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.56 -34.30 8.08 25.60 0.21 -34.09 16 8 H 0.04 2.43 7.59 -2.91 -0.02 2.40 16 9 C 0.24 13.43 1.05 -10.64 -0.01 13.41 16 10 O -0.59 -33.95 12.94 -148.98 -1.93 -35.87 16 11 C -0.11 -5.53 5.55 31.49 0.17 -5.36 16 12 C 0.03 1.07 4.63 86.45 0.40 1.47 16 13 N -0.48 -18.99 5.40 -855.56 -4.62 -23.61 16 14 C 0.03 0.92 3.23 44.91 0.15 1.06 16 15 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 16 C -0.11 -1.87 6.52 31.65 0.21 -1.67 16 17 C 0.09 1.55 6.44 86.83 0.56 2.10 16 18 N -0.60 -14.44 1.94 -822.31 -1.59 -16.04 16 19 C 0.13 2.47 6.52 85.63 0.56 3.03 16 20 C 0.45 11.44 8.40 71.24 0.60 12.04 16 21 O -0.54 -19.76 14.89 21.95 0.33 -19.43 16 22 O -0.51 -9.67 13.42 -51.34 -0.69 -10.36 16 23 C 0.49 16.58 5.39 87.90 0.47 17.05 16 24 O -0.57 -24.99 15.97 -3.01 -0.05 -25.04 16 25 C 0.05 2.40 5.65 86.39 0.49 2.88 16 26 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.37 21.62 7.32 -74.06 -0.54 21.08 16 28 H 0.04 2.26 7.98 -2.39 -0.02 2.24 16 29 H 0.03 1.98 7.25 -2.39 -0.02 1.96 16 30 H 0.06 2.81 3.21 -2.39 -0.01 2.81 16 31 H 0.09 3.22 7.27 -2.39 -0.02 3.21 16 32 H 0.11 1.86 8.08 -2.38 -0.02 1.85 16 33 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.28 6.72 -2.39 -0.02 1.26 16 36 H 0.18 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 2.35 7.93 -2.39 -0.02 2.33 16 38 H 0.42 5.63 9.10 -74.05 -0.67 4.96 16 39 H 0.07 3.44 8.08 -2.39 -0.02 3.42 16 40 H 0.04 2.39 5.50 -2.39 -0.01 2.38 16 Total: -1.00 -84.13 319.61 -2.18 -86.31 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.11 Total: 33.57 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 4.23 Total: 14.12 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -5.98 Total: -91.69 kcal Atomic # 8 Polarization: -88.37 SS G_CDS: -2.34 Total: -90.70 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -84.13 -2.18 -86.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.486 kcal (2) G-P(sol) polarization free energy of solvation -84.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds