Wall clock time and date at job start Fri Apr 10 2020 17:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48499 * 109.46948 * 240.00040 * 3 2 1 5 5 H 1.48492 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46876 * 120.00685 * 3 2 1 7 7 C 1.37877 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47240 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47317 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00079 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99947 * 179.97438 * 12 11 10 15 15 N 1.46492 * 109.46988 * 180.02562 * 14 12 11 16 16 C 1.45758 * 117.94612 * 269.98232 * 15 14 12 17 17 C 1.52918 * 110.49078 * 160.95007 * 16 15 14 18 18 C 1.53299 * 108.61363 * 50.76346 * 17 16 15 19 19 C 1.53068 * 108.44481 * 292.36839 * 18 17 16 20 20 H 1.09010 * 109.40104 * 288.93777 * 19 18 17 21 21 C 1.50696 * 109.40353 * 169.11512 * 19 18 17 22 22 O 1.20833 * 119.99655 * 359.82003 * 21 19 18 23 23 O 1.34222 * 120.00432 * 180.10271 * 21 19 18 24 24 C 1.33354 * 117.95259 * 90.00117 * 15 14 12 25 25 O 1.21285 * 118.24079 * 2.19803 * 24 15 14 26 26 H 0.96994 * 120.00083 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47795 * 59.99732 * 9 7 2 28 28 H 1.09002 * 109.47179 * 300.00033 * 9 7 2 29 29 H 1.08998 * 109.46828 * 59.99646 * 10 9 7 30 30 H 1.09002 * 109.46737 * 299.99906 * 10 9 7 31 31 H 0.97001 * 120.00066 * 359.97438 * 11 10 9 32 32 H 1.09002 * 109.46792 * 60.00012 * 14 12 11 33 33 H 1.09002 * 109.47005 * 300.00274 * 14 12 11 34 34 H 1.08998 * 109.29788 * 281.25705 * 16 15 14 35 35 H 1.08997 * 109.30136 * 40.63336 * 16 15 14 36 36 H 1.08998 * 109.60465 * 170.50980 * 17 16 15 37 37 H 1.09004 * 109.60364 * 290.99328 * 17 16 15 38 38 H 1.08991 * 109.59574 * 172.66841 * 18 17 16 39 39 H 1.09000 * 109.72947 * 52.14483 * 18 17 16 40 40 H 0.96701 * 117.00458 * 179.72178 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1866 -6.0981 -0.0018 13 8 3.3994 -6.0980 -0.0023 14 6 1.4331 -7.4031 -0.0018 15 7 2.3851 -8.5166 -0.0020 16 6 2.8286 -9.0360 -1.2896 17 6 4.1243 -9.8319 -1.1282 18 6 3.9338 -10.8536 -0.0013 19 6 3.7989 -10.0957 1.3218 20 1 4.7646 -9.6706 1.5956 21 6 3.3470 -11.0469 2.3997 22 8 3.1499 -12.2094 2.1358 23 8 3.1579 -10.6015 3.6517 24 6 2.7913 -8.9918 1.1760 25 8 2.3221 -8.5061 2.1834 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 0.5428 -4.9308 -0.0011 32 1 0.8061 -7.4606 -0.8916 33 1 0.8068 -7.4611 0.8884 34 1 2.0560 -9.6851 -1.7016 35 1 2.9991 -8.2049 -1.9739 36 1 4.3526 -10.3516 -2.0588 37 1 4.9402 -9.1550 -0.8751 38 1 4.7983 -11.5159 0.0417 39 1 3.0318 -11.4380 -0.1830 40 1 2.8638 -11.2480 4.3080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:02 Heat of formation + Delta-G solvation = -168.686078 kcal Electronic energy + Delta-G solvation = -24141.222020 eV Core-core repulsion = 20341.724747 eV Total energy + Delta-G solvation = -3799.497273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45732 -40.07740 -38.79852 -36.94094 -36.22858 -34.95302 -34.27576 -32.86001 -30.60321 -29.95939 -27.85996 -25.87973 -24.61921 -22.77599 -22.17216 -21.01651 -20.24115 -19.01571 -18.52034 -17.49404 -17.18226 -16.95900 -16.70869 -16.31975 -15.51598 -15.21199 -14.93409 -14.64624 -14.47629 -14.30357 -13.98599 -13.80782 -13.48430 -13.29568 -13.04871 -12.30234 -12.29869 -12.11901 -11.80753 -11.74927 -11.59783 -11.40281 -11.22748 -11.02264 -10.93112 -10.67210 -10.33445 -9.98267 -9.95180 -9.61218 -9.32958 -8.78086 -8.56242 -8.37005 -6.10156 -4.13177 1.72506 2.21267 2.56722 2.91783 2.94641 3.30566 3.34476 3.37438 3.72859 4.01581 4.13702 4.34249 4.41143 4.48321 4.80713 4.94294 5.00260 5.02304 5.08932 5.21473 5.26809 5.32030 5.39594 5.44667 5.53113 5.81750 6.01200 6.18971 6.31915 6.33722 6.71992 6.88373 7.11061 7.50012 7.59829 7.60566 7.84389 7.88174 7.98498 8.26479 8.59934 8.92526 9.51657 11.01415 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.002685 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.311770 B =10426.862747 C =10766.454077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.720 5.720 12 C 0.491 3.509 13 O -0.544 6.544 14 C 0.086 3.914 15 N -0.579 5.579 16 C 0.111 3.889 17 C -0.135 4.135 18 C -0.108 4.108 19 C -0.097 4.097 20 H 0.143 0.857 21 C 0.501 3.499 22 O -0.514 6.514 23 O -0.491 6.491 24 C 0.528 3.472 25 O -0.523 6.523 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.398 0.602 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -24.037 -1.726 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.001 3.999 11 N -0.370 5.370 12 C 0.275 3.725 13 O -0.422 6.422 14 C -0.040 4.040 15 N -0.311 5.311 16 C -0.011 4.011 17 C -0.173 4.173 18 C -0.146 4.146 19 C -0.118 4.118 20 H 0.160 0.840 21 C 0.343 3.657 22 O -0.402 6.402 23 O -0.300 6.300 24 C 0.314 3.686 25 O -0.398 6.398 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.724 -23.688 -1.551 24.204 hybrid contribution -0.156 0.657 0.378 0.774 sum 4.568 -23.030 -1.173 23.508 Atomic orbital electron populations 1.69941 1.06085 1.27013 1.50263 1.24993 0.94898 0.99401 0.94956 0.86568 0.79522 0.82644 0.78781 1.20120 1.21220 1.20096 1.21012 0.93200 0.90425 1.51525 0.92337 1.19318 0.94185 0.91073 0.97861 1.21716 0.96045 0.81446 1.00702 1.46293 1.10569 1.06482 1.73688 1.20917 0.88703 0.85842 0.77009 1.90659 1.13863 1.87631 1.50031 1.21453 0.91991 0.84610 1.05964 1.46761 1.45067 1.33249 1.06044 1.21517 0.96474 0.98705 0.84435 1.21894 0.97835 0.97914 0.99607 1.21624 1.04797 0.97618 0.90548 1.21127 1.01717 0.94641 0.94354 0.83978 1.22542 0.73230 0.87042 0.82935 1.90728 1.47820 1.19099 1.82583 1.84680 1.79086 1.46510 1.19743 1.19188 0.82397 0.83525 0.83445 1.90815 1.54962 1.58867 1.35182 0.92764 0.95932 0.95894 0.92618 0.92629 0.76825 0.87301 0.86458 0.91126 0.89849 0.88775 0.89999 0.89534 0.89719 0.73239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.25 5.56 -60.29 -0.33 -12.58 16 12 C 0.49 8.06 7.88 -10.98 -0.09 7.98 16 13 O -0.54 -10.88 16.42 5.56 0.09 -10.79 16 14 C 0.09 1.02 5.70 -5.20 -0.03 0.99 16 15 N -0.58 -6.64 2.30 -176.34 -0.41 -7.05 16 16 C 0.11 0.88 6.32 -4.48 -0.03 0.85 16 17 C -0.13 -0.87 6.02 -26.62 -0.16 -1.03 16 18 C -0.11 -0.78 4.77 -26.54 -0.13 -0.91 16 19 C -0.10 -0.97 2.86 -93.15 -0.27 -1.23 16 20 H 0.14 1.25 8.14 -51.92 -0.42 0.83 16 21 C 0.50 5.45 7.52 36.00 0.27 5.72 16 22 O -0.51 -6.30 16.55 -18.76 -0.31 -6.61 16 23 O -0.49 -5.02 12.37 -45.27 -0.56 -5.58 16 24 C 0.53 6.96 7.01 -11.87 -0.08 6.88 16 25 O -0.52 -8.80 14.81 -11.81 -0.17 -8.97 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 5.73 8.47 -40.82 -0.35 5.38 16 32 H 0.11 0.88 8.02 -51.93 -0.42 0.46 16 33 H 0.12 1.42 7.13 -51.93 -0.37 1.04 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.65 7.72 -51.93 -0.40 0.25 16 40 H 0.41 2.18 9.10 45.56 0.41 2.59 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -37.23 343.37 -6.78 -44.00 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.88 Total: 2.64 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.09 Total: 8.75 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.00 Total: -44.98 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.95 Total: -31.95 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.23 -6.78 -44.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.681 kcal (2) G-P(sol) polarization free energy of solvation -37.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds