Wall clock time and date at job start Fri Apr 10 2020 17:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48499 * 109.46948 * 240.00040 * 3 2 1 5 5 H 1.48492 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46876 * 120.00685 * 3 2 1 7 7 C 1.37877 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47240 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47317 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00079 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99947 * 179.97438 * 12 11 10 15 15 N 1.46492 * 109.46988 * 180.02562 * 14 12 11 16 16 C 1.45758 * 117.94612 * 269.98232 * 15 14 12 17 17 C 1.52918 * 110.49078 * 160.95007 * 16 15 14 18 18 C 1.53299 * 108.61363 * 50.76346 * 17 16 15 19 19 C 1.53068 * 108.44481 * 292.36839 * 18 17 16 20 20 H 1.09010 * 109.40104 * 288.93777 * 19 18 17 21 21 C 1.50696 * 109.40353 * 169.11512 * 19 18 17 22 22 O 1.20833 * 119.99655 * 359.82003 * 21 19 18 23 23 O 1.34222 * 120.00432 * 180.10271 * 21 19 18 24 24 C 1.33354 * 117.95259 * 90.00117 * 15 14 12 25 25 O 1.21285 * 118.24079 * 2.19803 * 24 15 14 26 26 H 0.96994 * 120.00083 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47795 * 59.99732 * 9 7 2 28 28 H 1.09002 * 109.47179 * 300.00033 * 9 7 2 29 29 H 1.08998 * 109.46828 * 59.99646 * 10 9 7 30 30 H 1.09002 * 109.46737 * 299.99906 * 10 9 7 31 31 H 0.97001 * 120.00066 * 359.97438 * 11 10 9 32 32 H 1.09002 * 109.46792 * 60.00012 * 14 12 11 33 33 H 1.09002 * 109.47005 * 300.00274 * 14 12 11 34 34 H 1.08998 * 109.29788 * 281.25705 * 16 15 14 35 35 H 1.08997 * 109.30136 * 40.63336 * 16 15 14 36 36 H 1.08998 * 109.60465 * 170.50980 * 17 16 15 37 37 H 1.09004 * 109.60364 * 290.99328 * 17 16 15 38 38 H 1.08991 * 109.59574 * 172.66841 * 18 17 16 39 39 H 1.09000 * 109.72947 * 52.14483 * 18 17 16 40 40 H 0.96701 * 117.00458 * 179.72178 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1866 -6.0981 -0.0018 13 8 3.3994 -6.0980 -0.0023 14 6 1.4331 -7.4031 -0.0018 15 7 2.3851 -8.5166 -0.0020 16 6 2.8286 -9.0360 -1.2896 17 6 4.1243 -9.8319 -1.1282 18 6 3.9338 -10.8536 -0.0013 19 6 3.7989 -10.0957 1.3218 20 1 4.7646 -9.6706 1.5956 21 6 3.3470 -11.0469 2.3997 22 8 3.1499 -12.2094 2.1358 23 8 3.1579 -10.6015 3.6517 24 6 2.7913 -8.9918 1.1760 25 8 2.3221 -8.5061 2.1834 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 0.5428 -4.9308 -0.0011 32 1 0.8061 -7.4606 -0.8916 33 1 0.8068 -7.4611 0.8884 34 1 2.0560 -9.6851 -1.7016 35 1 2.9991 -8.2049 -1.9739 36 1 4.3526 -10.3516 -2.0588 37 1 4.9402 -9.1550 -0.8751 38 1 4.7983 -11.5159 0.0417 39 1 3.0318 -11.4380 -0.1830 40 1 2.8638 -11.2480 4.3080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:01 Heat of formation + Delta-G solvation = -196.369795 kcal Electronic energy + Delta-G solvation = -24142.422476 eV Core-core repulsion = 20341.724747 eV Total energy + Delta-G solvation = -3800.697730 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.33952 -41.06481 -40.06755 -37.78859 -37.09026 -36.58485 -35.17343 -34.81948 -31.86395 -31.20993 -29.07150 -26.69536 -26.38894 -23.66787 -23.09220 -22.71109 -21.54868 -19.79554 -19.34513 -18.68896 -18.38578 -18.10772 -17.85752 -17.62405 -16.70583 -16.49318 -16.39455 -16.11928 -15.60555 -15.26382 -14.94411 -14.79064 -14.55847 -14.38698 -14.27074 -14.19750 -13.23705 -13.19656 -12.99442 -12.87278 -12.63226 -12.55479 -12.46029 -12.28885 -12.21958 -12.00353 -11.74912 -11.68505 -11.49685 -11.08285 -10.88658 -10.60654 -10.02347 -9.81014 -8.24690 -6.35372 0.88538 1.26164 1.41247 1.43466 1.51506 1.62927 1.74244 2.14926 2.33985 2.50584 3.09940 3.28305 3.44214 3.73579 3.83888 3.90086 4.12321 4.23293 4.31554 4.37892 4.46116 4.48980 4.49148 4.61140 4.81774 4.84299 4.98062 5.02564 5.20203 5.28063 5.31176 5.47717 5.48529 5.57854 5.78105 6.15626 6.23568 6.60161 6.77680 6.89404 6.93282 7.26242 7.33955 8.86899 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.002685 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.311770 B =10426.862747 C =10766.454077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.143 3.857 11 N -0.716 5.716 12 C 0.490 3.510 13 O -0.582 6.582 14 C 0.093 3.907 15 N -0.578 5.578 16 C 0.101 3.899 17 C -0.129 4.129 18 C -0.100 4.100 19 C -0.097 4.097 20 H 0.151 0.849 21 C 0.504 3.496 22 O -0.530 6.530 23 O -0.502 6.502 24 C 0.519 3.481 25 O -0.570 6.570 26 H 0.266 0.734 27 H 0.013 0.987 28 H 0.005 0.995 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.412 0.588 32 H 0.155 0.845 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -25.036 -2.964 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.019 3.981 11 N -0.368 5.368 12 C 0.276 3.724 13 O -0.462 6.462 14 C -0.034 4.034 15 N -0.309 5.309 16 C -0.020 4.020 17 C -0.166 4.166 18 C -0.138 4.138 19 C -0.119 4.119 20 H 0.168 0.832 21 C 0.346 3.654 22 O -0.420 6.420 23 O -0.314 6.314 24 C 0.306 3.694 25 O -0.449 6.449 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.024 0.976 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.248 0.752 32 H 0.173 0.827 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 5.087 -24.724 -2.812 25.398 hybrid contribution -0.288 0.942 0.785 1.260 sum 4.799 -23.782 -2.026 24.346 Atomic orbital electron populations 1.70044 1.07515 1.28104 1.50874 1.25864 0.95802 1.03068 0.94370 0.85512 0.78337 0.78179 0.79120 1.19159 1.20508 1.19554 1.21447 0.93550 0.92052 1.51747 0.92432 1.19123 0.94197 0.91677 0.96393 1.21170 0.95000 0.82400 0.99484 1.46112 1.11212 1.05501 1.73949 1.21766 0.88464 0.86828 0.75315 1.90639 1.15774 1.88247 1.51572 1.21516 0.91722 0.82041 1.08084 1.46996 1.44498 1.32453 1.06958 1.21869 0.98229 0.99301 0.82619 1.21913 0.96570 0.97441 1.00702 1.21642 1.05509 0.97597 0.89029 1.21251 1.00926 0.93994 0.95725 0.83200 1.22679 0.72724 0.86858 0.83156 1.90715 1.48681 1.19718 1.82881 1.84660 1.78941 1.47608 1.20204 1.19767 0.82380 0.83897 0.83314 1.90785 1.56757 1.60600 1.36782 0.92492 0.96873 0.97620 0.94461 0.93241 0.75180 0.82717 0.86559 0.88027 0.90084 0.85613 0.91356 0.87910 0.89727 0.71189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -30.84 9.11 25.60 0.23 -30.60 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.18 5.61 86.38 0.48 6.66 16 11 N -0.72 -24.21 5.56 -463.06 -2.57 -26.78 16 12 C 0.49 15.79 7.88 87.66 0.69 16.48 16 13 O -0.58 -23.32 16.42 -3.02 -0.05 -23.37 16 14 C 0.09 2.03 5.70 85.63 0.49 2.52 16 15 N -0.58 -12.31 2.30 -831.00 -1.91 -14.23 16 16 C 0.10 1.32 6.32 86.49 0.55 1.86 16 17 C -0.13 -1.31 6.02 30.67 0.18 -1.13 16 18 C -0.10 -1.22 4.77 30.72 0.15 -1.07 16 19 C -0.10 -1.85 2.86 -12.43 -0.04 -1.88 16 20 H 0.15 2.55 8.14 -2.38 -0.02 2.53 16 21 C 0.50 10.59 7.52 71.23 0.54 11.13 16 22 O -0.53 -12.43 16.55 21.94 0.36 -12.07 16 23 O -0.50 -10.16 12.37 -45.57 -0.56 -10.72 16 24 C 0.52 13.33 7.01 87.71 0.61 13.95 16 25 O -0.57 -19.35 14.81 13.56 0.20 -19.15 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.41 11.61 8.47 -92.71 -0.79 10.82 16 32 H 0.16 1.96 8.02 -2.39 -0.02 1.94 16 33 H 0.12 2.67 7.13 -2.39 -0.02 2.66 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.07 7.72 -2.39 -0.02 1.05 16 40 H 0.43 4.41 9.10 -74.06 -0.67 3.73 16 Total: -1.00 -81.36 343.37 1.90 -79.46 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -0.38 Total: 15.04 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 4.50 Total: 20.16 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -4.20 Total: -95.02 kcal Atomic # 8 Polarization: -65.27 SS G_CDS: -0.05 Total: -65.32 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -81.36 1.90 -79.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.905 kcal (2) G-P(sol) polarization free energy of solvation -81.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds