Wall clock time and date at job start Fri Apr 10 2020 17:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00296 * 2 1 4 4 H 1.48497 * 109.46916 * 240.00221 * 3 2 1 5 5 H 1.48502 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47301 * 120.00011 * 3 2 1 7 7 C 1.37873 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00191 * 359.97438 * 7 2 1 10 10 O 1.42903 * 113.25595 * 47.05034 * 9 7 2 11 11 C 1.53510 * 114.17359 * 180.02562 * 9 7 2 12 12 N 1.47472 * 87.93567 * 139.67153 * 11 9 7 13 13 C 1.46906 * 111.00187 * 221.29686 * 12 11 9 14 14 H 1.09000 * 110.43521 * 298.91315 * 13 12 11 15 15 C 1.54628 * 110.48707 * 176.22653 * 13 12 11 16 16 C 1.54485 * 101.76556 * 266.12253 * 15 13 12 17 17 N 1.46760 * 105.47099 * 334.58296 * 16 15 13 18 18 C 1.46495 * 124.35014 * 196.99522 * 17 16 15 19 19 C 1.53004 * 109.47382 * 270.00259 * 18 17 16 20 20 C 1.50699 * 109.47172 * 179.97438 * 19 18 17 21 21 O 1.20822 * 119.99904 * 0.02562 * 20 19 18 22 22 O 1.34227 * 120.00131 * 179.97438 * 20 19 18 23 23 C 1.34423 * 111.30467 * 17.02029 * 17 16 15 24 24 O 1.21273 * 124.94582 * 179.62969 * 23 17 16 25 25 C 1.47474 * 87.83857 * 332.99021 * 12 11 9 26 26 H 0.97007 * 119.99659 * 0.02562 * 1 2 3 27 27 H 0.96699 * 113.99911 * 312.95353 * 10 9 7 28 28 H 1.08999 * 113.47644 * 24.90238 * 11 9 7 29 29 H 1.09004 * 113.52990 * 254.44624 * 11 9 7 30 30 H 1.09004 * 110.96715 * 24.23817 * 15 13 12 31 31 H 1.08993 * 110.97342 * 148.00088 * 15 13 12 32 32 H 1.08999 * 110.24108 * 215.58503 * 16 15 13 33 33 H 1.08993 * 110.24707 * 93.58352 * 16 15 13 34 34 H 1.09004 * 109.47236 * 30.00488 * 18 17 16 35 35 H 1.08997 * 109.47747 * 149.99911 * 18 17 16 36 36 H 1.08997 * 109.46839 * 300.00006 * 19 18 17 37 37 H 1.08993 * 109.47016 * 59.99926 * 19 18 17 38 38 H 0.96700 * 117.00463 * 180.02562 * 22 20 19 39 39 H 1.08998 * 113.48515 * 141.77227 * 25 12 11 40 40 H 1.09001 * 113.47583 * 272.24643 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 0.1937 -2.5403 -0.9611 11 6 2.1494 -3.7438 -0.0005 12 7 1.2074 -4.3583 0.9532 13 6 1.9258 -5.0863 2.0078 14 1 2.5220 -5.8905 1.5766 15 6 0.9323 -5.6456 3.0524 16 6 0.9289 -4.5248 4.1155 17 7 2.2241 -3.8490 3.9760 18 6 2.8100 -2.9677 4.9891 19 6 2.3577 -1.5281 4.7360 20 6 2.9599 -0.6217 5.7785 21 8 3.6776 -1.0800 6.6356 22 8 2.6998 0.6949 5.7542 23 6 2.8037 -4.1420 2.7991 24 8 3.8748 -3.7126 2.4262 25 6 0.8553 -2.9967 1.3969 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3707 -1.7551 -0.9586 28 1 3.1389 -3.5651 0.4204 29 1 2.1869 -4.2535 -0.9633 30 1 -0.0591 -5.7742 2.6180 31 1 1.2961 -6.5824 3.4744 32 1 0.8319 -4.9520 5.1136 33 1 0.1157 -3.8250 3.9233 34 1 2.4810 -3.2832 5.9792 35 1 3.8972 -3.0221 4.9332 36 1 2.6867 -1.2127 3.7459 37 1 1.2706 -1.4738 4.7920 38 1 3.1090 1.2360 6.4433 39 1 -0.2047 -2.8724 1.6180 40 1 1.4994 -2.6185 2.1908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:05 Heat of formation + Delta-G solvation = -121.355297 kcal Electronic energy + Delta-G solvation = -26025.202375 eV Core-core repulsion = 22227.757518 eV Total energy + Delta-G solvation = -3797.444857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21866 -40.22104 -38.15289 -36.35964 -36.13603 -34.57689 -33.12527 -32.04685 -30.11112 -28.03876 -26.26349 -25.28108 -24.78980 -23.40964 -21.60320 -20.77020 -19.33540 -18.49587 -18.09020 -17.54690 -16.89824 -16.40035 -16.16667 -15.87098 -15.30091 -15.04147 -14.51688 -14.11876 -13.89698 -13.80821 -13.40131 -13.26281 -13.15771 -12.68250 -12.42650 -12.14133 -12.03897 -11.61844 -11.56316 -11.46624 -11.36165 -11.14402 -11.09428 -10.79310 -10.66385 -10.57392 -10.26919 -10.13577 -9.88313 -9.24188 -8.66197 -8.63522 -8.19806 -7.90797 -6.27689 -4.35892 2.15459 2.67197 2.87745 3.22322 3.26756 3.31137 3.38824 4.25620 4.41993 4.58715 4.75121 4.79616 4.94100 4.97160 5.09502 5.20603 5.29057 5.42490 5.51216 5.67775 5.72476 5.84256 5.90766 5.92958 6.05437 6.15571 6.24873 6.36783 6.43799 6.59001 6.71294 6.94328 6.99863 7.20476 7.36046 7.76681 7.81682 7.83497 8.00532 8.37312 8.67410 9.34034 9.65850 10.78360 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.008225 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.325904 B = 3403.263008 C = 5373.586579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.250 3.750 10 O -0.570 6.570 11 C -0.010 4.010 12 N -0.443 5.443 13 C 0.014 3.986 14 H 0.106 0.894 15 C -0.121 4.121 16 C 0.101 3.899 17 N -0.621 5.621 18 C 0.144 3.856 19 C -0.140 4.140 20 C 0.491 3.509 21 O -0.524 6.524 22 O -0.512 6.512 23 C 0.502 3.498 24 O -0.518 6.518 25 C -0.030 4.030 26 H 0.271 0.729 27 H 0.390 0.610 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.408 0.592 39 H 0.070 0.930 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 -5.231 11.511 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.129 4.129 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.383 6.383 11 C -0.139 4.139 12 N -0.167 5.167 13 C -0.099 4.099 14 H 0.124 0.876 15 C -0.159 4.159 16 C -0.022 4.022 17 N -0.357 5.357 18 C 0.021 3.979 19 C -0.179 4.179 20 C 0.333 3.667 21 O -0.414 6.414 22 O -0.323 6.323 23 C 0.289 3.711 24 O -0.392 6.392 25 C -0.159 4.159 26 H 0.082 0.918 27 H 0.246 0.754 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.266 0.734 39 H 0.089 0.911 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.136 -6.282 10.935 12.611 hybrid contribution 1.016 2.383 1.132 2.827 sum 1.152 -3.899 12.067 12.733 Atomic orbital electron populations 1.69278 1.06019 1.27857 1.50919 1.25019 0.94955 0.99517 0.93437 0.86508 0.79637 0.82086 0.79037 1.19917 1.20991 1.19936 1.21545 0.93779 0.90363 1.51062 0.91545 1.19309 0.84949 0.90842 0.84045 1.86036 1.45233 1.48097 1.58888 1.24393 0.96812 0.96186 0.96483 1.69286 1.25350 1.14409 1.07631 1.23137 0.94894 0.97914 0.93940 0.87556 1.22575 1.01643 0.97078 0.94603 1.22157 0.85294 0.94820 0.99923 1.48348 1.21369 1.47468 1.18500 1.21014 0.99669 0.86299 0.90930 1.21872 1.03409 0.93610 0.98970 1.23352 0.77608 0.81351 0.84355 1.90702 1.36339 1.76422 1.37918 1.84608 1.70576 1.20693 1.56408 1.21752 0.85750 0.82080 0.81540 1.90703 1.21615 1.55728 1.71131 1.24914 1.00894 0.87443 1.02668 0.91830 0.75412 0.89401 0.90899 0.88174 0.90068 0.90528 0.90747 0.89626 0.89201 0.86135 0.87115 0.73372 0.91114 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.62 11.02 55.43 0.61 -23.01 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.26 8.68 -34.44 -0.30 -14.56 16 8 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 9 C 0.25 6.32 1.57 -91.24 -0.14 6.17 16 10 O -0.57 -15.26 13.54 -35.23 -0.48 -15.73 16 11 C -0.01 -0.24 6.99 -7.56 -0.05 -0.29 16 12 N -0.44 -8.85 6.39 -236.62 -1.51 -10.36 16 13 C 0.01 0.22 3.29 -67.72 -0.22 0.00 16 14 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 15 C -0.12 -1.44 6.78 -25.10 -0.17 -1.61 16 16 C 0.10 1.16 6.61 -3.12 -0.02 1.14 16 17 N -0.62 -8.98 2.29 -172.42 -0.39 -9.38 16 18 C 0.14 1.93 5.22 -4.04 -0.02 1.91 16 19 C -0.14 -1.95 6.13 -27.88 -0.17 -2.12 16 20 C 0.49 6.70 8.33 36.01 0.30 7.00 16 21 O -0.52 -8.04 16.74 -18.75 -0.31 -8.36 16 22 O -0.51 -6.17 13.42 -39.25 -0.53 -6.69 16 23 C 0.50 8.96 4.86 -10.86 -0.05 8.91 16 24 O -0.52 -11.15 15.77 5.56 0.09 -11.06 16 25 C -0.03 -0.66 5.76 -7.55 -0.04 -0.70 16 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.39 10.57 6.33 45.56 0.29 10.86 16 28 H 0.09 2.05 5.67 -51.93 -0.29 1.76 16 29 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 34 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.09 1.35 7.89 -51.93 -0.41 0.94 16 36 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 37 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.41 2.91 9.10 45.56 0.41 3.32 16 39 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.07 1.47 5.17 -51.93 -0.27 1.20 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -32.04 330.87 -7.57 -39.61 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -4.02 Total: 16.73 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.99 Total: 7.66 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -1.29 Total: -42.74 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.23 Total: -41.84 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.04 -7.57 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.749 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds