Wall clock time and date at job start Fri Apr 10 2020 17:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00296 * 2 1 4 4 H 1.48497 * 109.46916 * 240.00221 * 3 2 1 5 5 H 1.48502 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47301 * 120.00011 * 3 2 1 7 7 C 1.37873 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00191 * 359.97438 * 7 2 1 10 10 O 1.42903 * 113.25595 * 47.05034 * 9 7 2 11 11 C 1.53510 * 114.17359 * 180.02562 * 9 7 2 12 12 N 1.47472 * 87.93567 * 139.67153 * 11 9 7 13 13 C 1.46906 * 111.00187 * 221.29686 * 12 11 9 14 14 H 1.09000 * 110.43521 * 298.91315 * 13 12 11 15 15 C 1.54628 * 110.48707 * 176.22653 * 13 12 11 16 16 C 1.54485 * 101.76556 * 266.12253 * 15 13 12 17 17 N 1.46760 * 105.47099 * 334.58296 * 16 15 13 18 18 C 1.46495 * 124.35014 * 196.99522 * 17 16 15 19 19 C 1.53004 * 109.47382 * 270.00259 * 18 17 16 20 20 C 1.50699 * 109.47172 * 179.97438 * 19 18 17 21 21 O 1.20822 * 119.99904 * 0.02562 * 20 19 18 22 22 O 1.34227 * 120.00131 * 179.97438 * 20 19 18 23 23 C 1.34423 * 111.30467 * 17.02029 * 17 16 15 24 24 O 1.21273 * 124.94582 * 179.62969 * 23 17 16 25 25 C 1.47474 * 87.83857 * 332.99021 * 12 11 9 26 26 H 0.97007 * 119.99659 * 0.02562 * 1 2 3 27 27 H 0.96699 * 113.99911 * 312.95353 * 10 9 7 28 28 H 1.08999 * 113.47644 * 24.90238 * 11 9 7 29 29 H 1.09004 * 113.52990 * 254.44624 * 11 9 7 30 30 H 1.09004 * 110.96715 * 24.23817 * 15 13 12 31 31 H 1.08993 * 110.97342 * 148.00088 * 15 13 12 32 32 H 1.08999 * 110.24108 * 215.58503 * 16 15 13 33 33 H 1.08993 * 110.24707 * 93.58352 * 16 15 13 34 34 H 1.09004 * 109.47236 * 30.00488 * 18 17 16 35 35 H 1.08997 * 109.47747 * 149.99911 * 18 17 16 36 36 H 1.08997 * 109.46839 * 300.00006 * 19 18 17 37 37 H 1.08993 * 109.47016 * 59.99926 * 19 18 17 38 38 H 0.96700 * 117.00463 * 180.02562 * 22 20 19 39 39 H 1.08998 * 113.48515 * 141.77227 * 25 12 11 40 40 H 1.09001 * 113.47583 * 272.24643 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 0.1937 -2.5403 -0.9611 11 6 2.1494 -3.7438 -0.0005 12 7 1.2074 -4.3583 0.9532 13 6 1.9258 -5.0863 2.0078 14 1 2.5220 -5.8905 1.5766 15 6 0.9323 -5.6456 3.0524 16 6 0.9289 -4.5248 4.1155 17 7 2.2241 -3.8490 3.9760 18 6 2.8100 -2.9677 4.9891 19 6 2.3577 -1.5281 4.7360 20 6 2.9599 -0.6217 5.7785 21 8 3.6776 -1.0800 6.6356 22 8 2.6998 0.6949 5.7542 23 6 2.8037 -4.1420 2.7991 24 8 3.8748 -3.7126 2.4262 25 6 0.8553 -2.9967 1.3969 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3707 -1.7551 -0.9586 28 1 3.1389 -3.5651 0.4204 29 1 2.1869 -4.2535 -0.9633 30 1 -0.0591 -5.7742 2.6180 31 1 1.2961 -6.5824 3.4744 32 1 0.8319 -4.9520 5.1136 33 1 0.1157 -3.8250 3.9233 34 1 2.4810 -3.2832 5.9792 35 1 3.8972 -3.0221 4.9332 36 1 2.6867 -1.2127 3.7459 37 1 1.2706 -1.4738 4.7920 38 1 3.1090 1.2360 6.4433 39 1 -0.2047 -2.8724 1.6180 40 1 1.4994 -2.6185 2.1908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:04 Heat of formation + Delta-G solvation = -148.709344 kcal Electronic energy + Delta-G solvation = -26026.388536 eV Core-core repulsion = 22227.757518 eV Total energy + Delta-G solvation = -3798.631017 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.61943 -41.32633 -39.77057 -37.63671 -37.26115 -36.29275 -34.48989 -34.09336 -31.37927 -29.48282 -27.90977 -26.85431 -26.24150 -24.94839 -22.70871 -21.99613 -20.85801 -20.06614 -19.38277 -19.21763 -18.14513 -17.78478 -17.34652 -17.18107 -17.01703 -16.60391 -16.20058 -15.48952 -15.42418 -15.21602 -14.85288 -14.47070 -14.38923 -14.10053 -13.94066 -13.59209 -13.39147 -13.23081 -13.20458 -12.90228 -12.81024 -12.63980 -12.36184 -12.31141 -12.25846 -12.01356 -11.78404 -11.76314 -11.45059 -11.09727 -10.65659 -10.09059 -9.82590 -9.61438 -8.28231 -6.43755 1.06402 1.37900 1.38608 1.39645 1.47466 1.71694 2.33378 2.34138 2.91751 3.04098 3.41912 3.50652 3.66457 3.83082 3.95986 4.04862 4.14424 4.24165 4.25955 4.32196 4.40140 4.47649 4.58501 4.66559 4.70093 4.78992 4.86369 5.06499 5.11596 5.16440 5.28571 5.38025 5.48668 5.54957 5.73469 5.96305 6.00079 6.16345 6.59033 6.89462 7.05320 7.28257 7.55831 8.76627 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.008225 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.325904 B = 3403.263008 C = 5373.586579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.039 3.961 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.556 4.556 8 H 0.048 0.952 9 C 0.223 3.777 10 O -0.580 6.580 11 C -0.006 4.006 12 N -0.435 5.435 13 C 0.005 3.995 14 H 0.115 0.885 15 C -0.108 4.108 16 C 0.095 3.905 17 N -0.613 5.613 18 C 0.145 3.855 19 C -0.136 4.136 20 C 0.499 3.501 21 O -0.542 6.542 22 O -0.514 6.514 23 C 0.491 3.509 24 O -0.567 6.567 25 C -0.008 4.008 26 H 0.276 0.724 27 H 0.385 0.615 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.429 0.571 39 H 0.065 0.935 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -5.746 13.520 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.161 4.161 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.594 4.594 8 H 0.066 0.934 9 C 0.181 3.819 10 O -0.392 6.392 11 C -0.135 4.135 12 N -0.158 5.158 13 C -0.107 4.107 14 H 0.133 0.867 15 C -0.146 4.146 16 C -0.026 4.026 17 N -0.347 5.347 18 C 0.023 3.977 19 C -0.175 4.175 20 C 0.342 3.658 21 O -0.433 6.433 22 O -0.328 6.328 23 C 0.278 3.722 24 O -0.445 6.445 25 C -0.137 4.137 26 H 0.087 0.913 27 H 0.240 0.760 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.144 0.856 38 H 0.291 0.709 39 H 0.084 0.916 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.908 -6.795 12.980 14.679 hybrid contribution 1.328 2.555 0.523 2.927 sum 0.420 -4.239 13.503 14.159 Atomic orbital electron populations 1.69318 1.06617 1.28721 1.50440 1.25597 0.95777 1.01896 0.92877 0.85679 0.78704 0.79063 0.78668 1.20187 1.19581 1.19956 1.21656 0.93156 0.92029 1.52537 0.93369 1.19619 0.85276 0.91277 0.85682 1.86016 1.45548 1.47771 1.59884 1.24216 0.96396 0.95604 0.97253 1.69179 1.25005 1.13258 1.08322 1.23324 0.96036 0.97372 0.94017 0.86722 1.22651 1.00569 0.98433 0.92905 1.22473 0.83351 0.94561 1.02262 1.48442 1.21982 1.46808 1.17429 1.21083 0.98642 0.85960 0.92036 1.21779 1.04340 0.94144 0.97243 1.23131 0.77061 0.81766 0.83796 1.90698 1.37025 1.76870 1.38665 1.84557 1.70635 1.20164 1.57448 1.22035 0.85387 0.82156 0.82584 1.90671 1.23845 1.57567 1.72414 1.24545 1.00287 0.88335 1.00573 0.91347 0.75998 0.90538 0.91101 0.87648 0.86513 0.86120 0.91038 0.86226 0.91237 0.89700 0.85566 0.70859 0.91613 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.86 11.02 21.45 0.24 -47.62 16 2 C 0.04 2.06 5.39 84.65 0.46 2.52 16 3 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.56 -30.82 8.68 25.60 0.22 -30.59 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.22 11.48 1.57 -11.19 -0.02 11.47 16 10 O -0.58 -31.62 13.54 -148.98 -2.02 -33.63 16 11 C -0.01 -0.27 6.99 83.57 0.58 0.31 16 12 N -0.43 -17.16 6.39 -902.93 -5.77 -22.93 16 13 C 0.00 0.15 3.29 44.91 0.15 0.30 16 14 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 15 C -0.11 -2.17 6.78 31.65 0.21 -1.95 16 16 C 0.09 1.84 6.61 86.83 0.57 2.41 16 17 N -0.61 -16.64 2.29 -818.00 -1.87 -18.51 16 18 C 0.15 3.70 5.22 86.38 0.45 4.15 16 19 C -0.14 -3.71 6.13 29.85 0.18 -3.53 16 20 C 0.50 13.04 8.33 71.24 0.59 13.63 16 21 O -0.54 -15.87 16.74 21.97 0.37 -15.50 16 22 O -0.51 -11.58 13.42 -51.39 -0.69 -12.27 16 23 C 0.49 17.36 4.86 87.90 0.43 17.79 16 24 O -0.57 -25.21 15.77 -3.01 -0.05 -25.26 16 25 C -0.01 -0.35 5.76 83.57 0.48 0.13 16 26 H 0.28 13.69 8.31 -92.70 -0.77 12.92 16 27 H 0.39 21.26 6.33 -74.06 -0.47 20.80 16 28 H 0.08 3.74 5.67 -2.39 -0.01 3.72 16 29 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 30 H 0.11 2.10 8.08 -2.38 -0.02 2.08 16 31 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.48 7.77 -2.39 -0.02 1.47 16 34 H 0.12 2.26 8.10 -2.38 -0.02 2.24 16 35 H 0.07 2.08 7.89 -2.39 -0.02 2.06 16 36 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.43 5.28 9.10 -74.06 -0.67 4.60 16 39 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.07 2.91 5.17 -2.39 -0.01 2.90 16 Total: -1.00 -71.02 330.87 -3.50 -74.52 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.05 Total: 40.05 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 4.32 Total: 16.63 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -7.40 Total: -89.07 kcal Atomic # 8 Polarization: -84.28 SS G_CDS: -2.39 Total: -86.66 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.02 -3.50 -74.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.189 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds