Wall clock time and date at job start Fri Apr 10 2020 17:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00495 * 2 1 4 4 H 1.48503 * 109.46783 * 269.99639 * 3 2 1 5 5 H 1.48496 * 109.47068 * 29.99667 * 3 2 1 6 6 H 1.48501 * 109.47251 * 150.00160 * 3 2 1 7 7 C 1.38953 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00375 * 199.96163 * 7 2 1 9 9 N 1.37099 * 120.00037 * 19.96491 * 7 2 1 10 10 C 1.46498 * 119.99842 * 17.77131 * 9 7 2 11 11 C 1.50701 * 109.47376 * 263.99916 * 10 9 7 12 12 O 1.20824 * 120.00077 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.34776 * 120.00361 * 197.78004 * 9 7 2 15 15 O 1.21292 * 119.99619 * 5.17273 * 14 9 7 16 16 C 1.50701 * 120.00078 * 185.17980 * 14 9 7 17 17 H 1.08993 * 109.47392 * 333.31661 * 16 14 9 18 18 C 1.53002 * 109.47011 * 213.31290 * 16 14 9 19 19 C 1.52993 * 109.46968 * 180.02562 * 18 16 14 20 20 C 1.52995 * 109.47238 * 60.00342 * 19 18 16 21 21 C 1.52998 * 109.47271 * 300.00055 * 20 19 18 22 22 H 1.09006 * 109.46808 * 300.00025 * 21 20 19 23 23 C 1.50701 * 109.47467 * 180.02562 * 21 20 19 24 24 N 1.34773 * 120.00423 * 59.99595 * 23 21 20 25 25 O 1.21289 * 119.99642 * 240.00144 * 23 21 20 26 26 C 1.52992 * 109.47358 * 59.99621 * 21 20 19 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47453 * 23.99902 * 10 9 7 29 29 H 1.08999 * 109.47360 * 143.99770 * 10 9 7 30 30 H 0.96709 * 117.00022 * 180.02562 * 13 11 10 31 31 H 1.08993 * 109.47346 * 300.00400 * 18 16 14 32 32 H 1.09004 * 109.46732 * 60.00337 * 18 16 14 33 33 H 1.08996 * 109.47021 * 180.02562 * 19 18 16 34 34 H 1.09006 * 109.47156 * 300.00125 * 19 18 16 35 35 H 1.09001 * 109.47647 * 179.97438 * 20 19 18 36 36 H 1.09006 * 109.47224 * 59.99825 * 20 19 18 37 37 H 0.96995 * 120.00594 * 180.02562 * 24 23 21 38 38 H 0.97002 * 119.99507 * 359.72631 * 24 23 21 39 39 H 1.09001 * 109.46910 * 59.99934 * 26 21 20 40 40 H 1.08996 * 109.47345 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0401 -1.2315 0.3198 9 7 1.3850 -2.3552 -0.4043 10 6 0.1515 -2.2824 -1.1912 11 6 -1.0376 -2.4128 -0.2745 12 8 -0.8716 -2.5527 0.9140 13 8 -2.2810 -2.3746 -0.7787 14 6 1.9066 -3.5544 -0.0784 15 8 2.8737 -3.6171 0.6510 16 6 1.2883 -4.8175 -0.6202 17 1 0.2330 -4.6442 -0.8305 18 6 1.4252 -5.9366 0.4140 19 6 0.7980 -7.2190 -0.1363 20 6 1.5154 -7.6252 -1.4252 21 6 1.3787 -6.5061 -2.4594 22 1 0.3233 -6.3330 -2.6701 23 6 2.0848 -6.9064 -3.7292 24 7 1.6994 -8.0133 -4.3944 25 8 3.0000 -6.2323 -4.1524 26 6 2.0058 -5.2236 -1.9091 27 1 -0.4850 0.8401 -0.0004 28 1 0.1071 -1.3246 -1.7097 29 1 0.1379 -3.0917 -1.9213 30 1 -3.0120 -2.4620 -0.1515 31 1 2.4805 -6.1099 0.6244 32 1 0.9144 -5.6471 1.3324 33 1 0.8951 -8.0162 0.6006 34 1 -0.2574 -7.0460 -0.3470 35 1 1.0690 -8.5391 -1.8171 36 1 2.5709 -7.7982 -1.2145 37 1 2.1540 -8.2712 -5.2115 38 1 0.9700 -8.5545 -4.0537 39 1 3.0611 -5.3967 -1.6984 40 1 1.9079 -4.4262 -2.6457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:17 Heat of formation + Delta-G solvation = -174.215332 kcal Electronic energy + Delta-G solvation = -25759.844648 eV Core-core repulsion = 21960.107608 eV Total energy + Delta-G solvation = -3799.737040 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.26906 -39.38161 -38.39051 -36.77903 -35.19600 -34.45280 -33.77621 -31.86924 -30.79680 -30.53945 -27.66744 -25.16145 -23.80497 -22.85184 -21.14790 -20.77375 -19.72148 -18.63823 -17.50259 -17.14326 -16.87754 -16.56933 -16.17572 -15.61439 -15.24025 -14.75151 -14.53340 -14.42079 -14.18928 -13.83778 -13.60538 -13.47228 -12.89881 -12.55717 -12.26482 -12.11522 -11.74037 -11.62992 -11.47504 -11.18391 -11.02677 -10.92700 -10.54065 -10.41803 -10.37230 -10.34408 -10.28968 -10.08882 -9.77983 -9.69462 -9.60993 -9.02452 -8.38152 -7.87310 -6.41634 -3.86893 2.62762 3.16600 3.26627 3.32386 3.40490 3.47228 3.69214 4.08325 4.26723 4.59219 4.68454 4.77675 4.90381 5.06658 5.25345 5.33966 5.36862 5.52698 5.59248 5.60721 5.69205 5.84948 5.93213 6.06330 6.11794 6.18001 6.37540 6.40898 6.47880 6.60213 6.63704 6.68974 6.74252 7.22628 7.48760 7.57176 8.02869 8.22258 8.40666 9.03645 9.12981 9.34307 9.88926 10.67395 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.005068 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.392683 B = 5523.323686 C = 5905.242613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.028 3.972 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.433 5.433 10 C 0.147 3.853 11 C 0.488 3.512 12 O -0.502 6.502 13 O -0.535 6.535 14 C 0.470 3.530 15 O -0.572 6.572 16 C -0.099 4.099 17 H 0.073 0.927 18 C -0.101 4.101 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.107 4.107 22 H 0.099 0.901 23 C 0.521 3.479 24 N -0.860 5.860 25 O -0.537 6.537 26 C -0.086 4.086 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.391 0.609 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.400 0.600 39 H 0.078 0.922 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 -14.355 -7.787 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.124 0.876 9 N -0.153 5.153 10 C 0.020 3.980 11 C 0.328 3.672 12 O -0.387 6.387 13 O -0.346 6.346 14 C 0.258 3.742 15 O -0.455 6.455 16 C -0.121 4.121 17 H 0.092 0.908 18 C -0.139 4.139 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.128 4.128 22 H 0.117 0.883 23 C 0.306 3.694 24 N -0.424 5.424 25 O -0.412 6.412 26 C -0.125 4.125 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.095 0.905 30 H 0.247 0.753 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.228 0.772 38 H 0.228 0.772 39 H 0.096 0.904 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.087 -13.642 -7.460 16.077 hybrid contribution -0.712 0.585 0.295 0.967 sum -4.799 -13.057 -7.165 15.648 Atomic orbital electron populations 1.69764 1.06010 1.27759 1.49013 1.25229 0.95343 0.99948 0.96902 0.85856 0.79473 0.80671 0.78322 1.20286 1.21136 1.19375 1.19736 0.96930 0.83152 1.43052 0.87587 1.43436 1.19910 1.05427 1.46503 1.20651 0.81552 1.04522 0.91275 1.23863 0.83175 0.70834 0.89300 1.90613 1.85652 1.44896 1.17517 1.84529 1.17369 1.86689 1.46057 1.19945 0.86814 0.83936 0.83481 1.90517 1.29703 1.86382 1.38902 1.21225 0.99906 0.95006 0.95997 0.90849 1.21350 1.02247 0.92677 0.97626 1.21542 0.99577 0.97956 0.96253 1.21536 1.01945 0.96028 0.95077 1.21387 1.01111 0.97963 0.92366 0.88314 1.20782 0.83189 0.79965 0.85465 1.43920 1.40010 1.28731 1.29703 1.90768 1.29564 1.52419 1.68486 1.21275 1.00544 0.95085 0.95589 0.91967 0.85514 0.90534 0.75259 0.90729 0.91572 0.91507 0.91870 0.91841 0.91178 0.77181 0.77209 0.90379 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 9.20 55.50 0.51 -22.95 16 2 C 0.03 0.74 4.91 -17.47 -0.09 0.65 16 3 Si 0.93 20.91 29.60 -169.99 -5.03 15.88 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.41 9.31 -14.93 -0.14 -8.54 16 8 H 0.11 3.11 7.42 -52.49 -0.39 2.72 16 9 N -0.43 -11.02 2.18 -116.10 -0.25 -11.27 16 10 C 0.15 3.21 4.82 -5.19 -0.03 3.18 16 11 C 0.49 10.77 5.85 36.01 0.21 10.98 16 12 O -0.50 -13.04 16.75 -18.75 -0.31 -13.35 16 13 O -0.54 -9.47 13.42 -39.26 -0.53 -9.99 16 14 C 0.47 11.49 6.42 -10.99 -0.07 11.42 16 15 O -0.57 -16.07 15.92 5.55 0.09 -15.98 16 16 C -0.10 -1.82 1.75 -91.77 -0.16 -1.98 16 17 H 0.07 1.27 5.83 -51.93 -0.30 0.96 16 18 C -0.10 -1.65 4.84 -26.73 -0.13 -1.78 16 19 C -0.12 -1.32 5.92 -26.74 -0.16 -1.47 16 20 C -0.11 -1.09 5.10 -26.73 -0.14 -1.22 16 21 C -0.11 -1.26 2.52 -91.78 -0.23 -1.49 16 22 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 23 C 0.52 6.45 7.43 -10.99 -0.08 6.37 16 24 N -0.86 -6.51 8.77 31.22 0.27 -6.24 16 25 O -0.54 -9.27 16.82 5.55 0.09 -9.18 16 26 C -0.09 -1.41 3.69 -26.73 -0.10 -1.51 16 27 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.13 2.90 6.40 -51.93 -0.33 2.57 16 29 H 0.08 1.37 6.30 -51.93 -0.33 1.05 16 30 H 0.39 5.28 9.10 45.56 0.41 5.70 16 31 H 0.07 1.31 7.85 -51.93 -0.41 0.90 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.40 2.63 8.93 -40.82 -0.36 2.26 16 38 H 0.40 1.79 8.24 -40.82 -0.34 1.45 16 39 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 40 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -36.89 329.16 -5.82 -42.71 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -4.52 Total: 10.81 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: -1.11 Total: 14.61 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.53 Total: -40.46 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.66 Total: -48.51 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.89 -5.82 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.504 kcal (2) G-P(sol) polarization free energy of solvation -36.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds