Wall clock time and date at job start Fri Apr 10 2020 17:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00495 * 2 1 4 4 H 1.48503 * 109.46783 * 269.99639 * 3 2 1 5 5 H 1.48496 * 109.47068 * 29.99667 * 3 2 1 6 6 H 1.48501 * 109.47251 * 150.00160 * 3 2 1 7 7 C 1.38953 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00375 * 199.96163 * 7 2 1 9 9 N 1.37099 * 120.00037 * 19.96491 * 7 2 1 10 10 C 1.46498 * 119.99842 * 17.77131 * 9 7 2 11 11 C 1.50701 * 109.47376 * 263.99916 * 10 9 7 12 12 O 1.20824 * 120.00077 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.34776 * 120.00361 * 197.78004 * 9 7 2 15 15 O 1.21292 * 119.99619 * 5.17273 * 14 9 7 16 16 C 1.50701 * 120.00078 * 185.17980 * 14 9 7 17 17 H 1.08993 * 109.47392 * 333.31661 * 16 14 9 18 18 C 1.53002 * 109.47011 * 213.31290 * 16 14 9 19 19 C 1.52993 * 109.46968 * 180.02562 * 18 16 14 20 20 C 1.52995 * 109.47238 * 60.00342 * 19 18 16 21 21 C 1.52998 * 109.47271 * 300.00055 * 20 19 18 22 22 H 1.09006 * 109.46808 * 300.00025 * 21 20 19 23 23 C 1.50701 * 109.47467 * 180.02562 * 21 20 19 24 24 N 1.34773 * 120.00423 * 59.99595 * 23 21 20 25 25 O 1.21289 * 119.99642 * 240.00144 * 23 21 20 26 26 C 1.52992 * 109.47358 * 59.99621 * 21 20 19 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47453 * 23.99902 * 10 9 7 29 29 H 1.08999 * 109.47360 * 143.99770 * 10 9 7 30 30 H 0.96709 * 117.00022 * 180.02562 * 13 11 10 31 31 H 1.08993 * 109.47346 * 300.00400 * 18 16 14 32 32 H 1.09004 * 109.46732 * 60.00337 * 18 16 14 33 33 H 1.08996 * 109.47021 * 180.02562 * 19 18 16 34 34 H 1.09006 * 109.47156 * 300.00125 * 19 18 16 35 35 H 1.09001 * 109.47647 * 179.97438 * 20 19 18 36 36 H 1.09006 * 109.47224 * 59.99825 * 20 19 18 37 37 H 0.96995 * 120.00594 * 180.02562 * 24 23 21 38 38 H 0.97002 * 119.99507 * 359.72631 * 24 23 21 39 39 H 1.09001 * 109.46910 * 59.99934 * 26 21 20 40 40 H 1.08996 * 109.47345 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0401 -1.2315 0.3198 9 7 1.3850 -2.3552 -0.4043 10 6 0.1515 -2.2824 -1.1912 11 6 -1.0376 -2.4128 -0.2745 12 8 -0.8716 -2.5527 0.9140 13 8 -2.2810 -2.3746 -0.7787 14 6 1.9066 -3.5544 -0.0784 15 8 2.8737 -3.6171 0.6510 16 6 1.2883 -4.8175 -0.6202 17 1 0.2330 -4.6442 -0.8305 18 6 1.4252 -5.9366 0.4140 19 6 0.7980 -7.2190 -0.1363 20 6 1.5154 -7.6252 -1.4252 21 6 1.3787 -6.5061 -2.4594 22 1 0.3233 -6.3330 -2.6701 23 6 2.0848 -6.9064 -3.7292 24 7 1.6994 -8.0133 -4.3944 25 8 3.0000 -6.2323 -4.1524 26 6 2.0058 -5.2236 -1.9091 27 1 -0.4850 0.8401 -0.0004 28 1 0.1071 -1.3246 -1.7097 29 1 0.1379 -3.0917 -1.9213 30 1 -3.0120 -2.4620 -0.1515 31 1 2.4805 -6.1099 0.6244 32 1 0.9144 -5.6471 1.3324 33 1 0.8951 -8.0162 0.6006 34 1 -0.2574 -7.0460 -0.3470 35 1 1.0690 -8.5391 -1.8171 36 1 2.5709 -7.7982 -1.2145 37 1 2.1540 -8.2712 -5.2115 38 1 0.9700 -8.5545 -4.0537 39 1 3.0611 -5.3967 -1.6984 40 1 1.9079 -4.4262 -2.6457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:17 Heat of formation + Delta-G solvation = -204.267344 kcal Electronic energy + Delta-G solvation = -25761.147801 eV Core-core repulsion = 21960.107608 eV Total energy + Delta-G solvation = -3801.040193 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65416 -40.84017 -40.01582 -38.11208 -36.96462 -36.33475 -34.68465 -33.81375 -31.91931 -31.83915 -29.50633 -27.04394 -24.91765 -24.25715 -22.79636 -21.97141 -20.76806 -20.22385 -19.04974 -18.68945 -18.43785 -17.92232 -17.51424 -17.33425 -16.51006 -16.33231 -16.13657 -15.90871 -15.67879 -15.24902 -14.98823 -14.65579 -14.49582 -13.94211 -13.72558 -13.57416 -13.39697 -13.31363 -13.07898 -12.72650 -12.43545 -12.25043 -12.21457 -12.17393 -12.11870 -11.66960 -11.55060 -11.50382 -11.32438 -10.96650 -10.76403 -10.56955 -10.28639 -9.87000 -8.44994 -5.98071 1.35010 1.40060 1.52162 1.68109 1.69914 1.87483 2.22861 2.51822 2.65575 2.94232 3.10277 3.58258 3.71308 3.81675 4.04987 4.15869 4.19533 4.30943 4.36047 4.44699 4.49438 4.56985 4.67282 4.73576 4.92841 5.02355 5.12113 5.18120 5.18729 5.25905 5.33876 5.42732 5.51578 5.95946 5.98691 6.01252 6.38904 6.55003 7.10260 7.30118 7.44415 7.46500 7.93575 8.61700 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.005068 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.392683 B = 5523.323686 C = 5905.242613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.000 4.000 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.342 4.342 8 H 0.073 0.927 9 N -0.446 5.446 10 C 0.143 3.857 11 C 0.498 3.502 12 O -0.547 6.547 13 O -0.516 6.516 14 C 0.452 3.548 15 O -0.626 6.626 16 C -0.086 4.086 17 H 0.091 0.909 18 C -0.102 4.102 19 C -0.105 4.105 20 C -0.103 4.103 21 C -0.100 4.100 22 H 0.133 0.867 23 C 0.521 3.479 24 N -0.831 5.831 25 O -0.597 6.597 26 C -0.080 4.080 27 H 0.275 0.725 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.414 0.586 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.407 0.593 38 H 0.420 0.580 39 H 0.045 0.955 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 -16.166 -9.540 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.470 4.470 8 H 0.091 0.909 9 N -0.165 5.165 10 C 0.017 3.983 11 C 0.340 3.660 12 O -0.436 6.436 13 O -0.328 6.328 14 C 0.243 3.757 15 O -0.512 6.512 16 C -0.107 4.107 17 H 0.109 0.891 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.121 4.121 22 H 0.151 0.849 23 C 0.306 3.694 24 N -0.396 5.396 25 O -0.477 6.477 26 C -0.119 4.119 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.274 0.726 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.238 0.762 38 H 0.252 0.748 39 H 0.064 0.936 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.841 -15.507 -9.260 19.314 hybrid contribution 0.040 1.158 0.852 1.438 sum -6.801 -14.349 -8.408 17.968 Atomic orbital electron populations 1.69836 1.06657 1.28669 1.48042 1.25945 0.96235 1.02245 0.95697 0.84960 0.77695 0.76778 0.79021 1.18425 1.20222 1.20563 1.19615 0.96388 0.85277 1.45682 0.90858 1.43620 1.21031 1.05160 1.46643 1.20798 0.80415 1.05600 0.91448 1.23706 0.84294 0.69644 0.88335 1.90610 1.86533 1.47139 1.19312 1.84446 1.16559 1.85702 1.46118 1.21150 0.86180 0.85640 0.82728 1.90461 1.32026 1.87402 1.41328 1.21183 1.00115 0.92298 0.97151 0.89136 1.21375 1.01140 0.94917 0.96541 1.21515 1.00285 0.95247 0.97179 1.21573 1.01532 0.97102 0.93876 1.21348 1.02223 0.95937 0.92559 0.84898 1.20825 0.82412 0.80527 0.85591 1.43647 1.39761 1.26984 1.29161 1.90761 1.32265 1.54694 1.70004 1.21140 0.98977 0.97557 0.94216 0.91509 0.86507 0.86498 0.72616 0.93150 0.93913 0.89397 0.89622 0.86876 0.92634 0.76192 0.74799 0.93574 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.31 9.20 21.66 0.20 -47.11 16 2 C 0.00 0.01 4.91 84.93 0.42 0.42 16 3 Si 0.99 43.53 29.60 68.60 2.03 45.56 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.34 -20.05 9.31 84.04 0.78 -19.27 16 8 H 0.07 4.66 7.42 -2.91 -0.02 4.63 16 9 N -0.45 -23.60 2.18 -639.60 -1.39 -24.99 16 10 C 0.14 6.23 4.82 85.63 0.41 6.64 16 11 C 0.50 21.48 5.85 71.24 0.42 21.90 16 12 O -0.55 -28.53 16.75 21.97 0.37 -28.16 16 13 O -0.52 -16.81 13.42 -51.41 -0.69 -17.50 16 14 C 0.45 23.36 6.42 87.66 0.56 23.92 16 15 O -0.63 -37.95 15.92 -3.07 -0.05 -38.00 16 16 C -0.09 -3.17 1.75 -11.54 -0.02 -3.19 16 17 H 0.09 2.99 5.83 -2.39 -0.01 2.97 16 18 C -0.10 -3.35 4.84 30.59 0.15 -3.21 16 19 C -0.10 -2.04 5.92 30.59 0.18 -1.86 16 20 C -0.10 -1.68 5.10 30.59 0.16 -1.52 16 21 C -0.10 -2.06 2.52 -11.54 -0.03 -2.09 16 22 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 23 C 0.52 11.71 7.43 87.66 0.65 12.36 16 24 N -0.83 -9.33 8.77 -173.53 -1.52 -10.86 16 25 O -0.60 -20.55 16.82 -3.06 -0.05 -20.61 16 26 C -0.08 -2.64 3.69 30.59 0.11 -2.52 16 27 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 28 H 0.12 5.33 6.40 -2.39 -0.02 5.31 16 29 H 0.12 4.03 6.30 -2.39 -0.02 4.01 16 30 H 0.41 9.87 9.10 -74.05 -0.67 9.20 16 31 H 0.05 1.87 7.85 -2.39 -0.02 1.85 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.11 0.82 7.56 -2.39 -0.02 0.80 16 36 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.41 3.98 8.93 -92.71 -0.83 3.16 16 38 H 0.42 1.44 8.24 -92.71 -0.76 0.67 16 39 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.06 2.09 7.86 -2.39 -0.02 2.07 16 Total: -1.00 -87.91 329.16 1.53 -86.38 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -1.15 Total: 23.70 kcal Atomic # 6 Polarization: 27.78 SS G_CDS: 3.79 Total: 31.58 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.72 Total: -82.96 kcal Atomic # 8 Polarization: -103.84 SS G_CDS: -0.42 Total: -104.26 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -87.91 1.53 -86.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.890 kcal (2) G-P(sol) polarization free energy of solvation -87.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds