Wall clock time and date at job start Fri Apr 10 2020 17:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 119.99803 * 2 1 4 4 H 1.48495 * 109.47379 * 272.49843 * 3 2 1 5 5 H 1.48504 * 109.47069 * 32.50274 * 3 2 1 6 6 H 1.48503 * 109.46828 * 152.49606 * 3 2 1 7 7 C 1.38944 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99600 * 338.41736 * 7 2 1 9 9 N 1.37089 * 120.00414 * 158.41764 * 7 2 1 10 10 C 1.46502 * 120.00270 * 135.56316 * 9 7 2 11 11 C 1.50696 * 109.47357 * 84.88874 * 10 9 7 12 12 O 1.20833 * 119.99553 * 359.97438 * 11 10 9 13 13 O 1.34221 * 120.00557 * 180.02562 * 11 10 9 14 14 C 1.34779 * 120.00055 * 315.56476 * 9 7 2 15 15 O 1.21294 * 119.99707 * 3.98301 * 14 9 7 16 16 C 1.50704 * 120.00188 * 183.97257 * 14 9 7 17 17 H 1.08989 * 109.47357 * 312.79556 * 16 14 9 18 18 C 1.52998 * 109.46614 * 72.79539 * 16 14 9 19 19 C 1.53000 * 109.47461 * 59.99926 * 18 16 14 20 20 C 1.53001 * 109.47006 * 59.99664 * 19 18 16 21 21 C 1.53001 * 109.47254 * 300.00066 * 20 19 18 22 22 H 1.08995 * 109.47013 * 299.99810 * 21 20 19 23 23 C 1.50696 * 109.46691 * 179.97438 * 21 20 19 24 24 N 1.34780 * 120.00278 * 60.00867 * 23 21 20 25 25 O 1.21282 * 120.00410 * 239.99679 * 23 21 20 26 26 C 1.52999 * 109.46714 * 60.00319 * 21 20 19 27 27 H 0.97000 * 119.99845 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47466 * 204.88833 * 10 9 7 29 29 H 1.08998 * 109.46974 * 324.88509 * 10 9 7 30 30 H 0.96697 * 117.00658 * 180.02562 * 13 11 10 31 31 H 1.08997 * 109.47136 * 179.97438 * 18 16 14 32 32 H 1.09004 * 109.47338 * 300.00090 * 18 16 14 33 33 H 1.08996 * 109.47704 * 180.02562 * 19 18 16 34 34 H 1.09006 * 109.47078 * 300.00194 * 19 18 16 35 35 H 1.08997 * 109.46951 * 60.00456 * 20 19 18 36 36 H 1.09002 * 109.46929 * 180.02562 * 20 19 18 37 37 H 0.96996 * 119.99697 * 359.97438 * 24 23 21 38 38 H 0.96995 * 120.00029 * 179.97438 * 24 23 21 39 39 H 1.08999 * 109.46838 * 179.97438 * 26 21 20 40 40 H 1.08997 * 109.47354 * 59.99695 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4428 2.0770 -1.3987 5 1 1.4730 2.6368 0.7523 6 1 3.5711 1.4255 0.6466 7 6 2.0089 -1.2033 -0.0005 8 1 1.5256 -2.1060 0.3431 9 7 3.3077 -1.2448 -0.4372 10 6 4.3122 -1.9940 0.3217 11 6 4.2764 -3.4428 -0.0915 12 8 3.4919 -3.8117 -0.9333 13 8 5.1152 -4.3236 0.4761 14 6 3.6606 -0.5962 -1.5648 15 8 2.8464 0.0831 -2.1538 16 6 5.0668 -0.7149 -2.0937 17 1 5.7752 -0.5635 -1.2794 18 6 5.2699 -2.1074 -2.6941 19 6 4.2754 -2.3200 -3.8372 20 6 4.5053 -1.2605 -4.9169 21 6 4.3021 0.1320 -4.3164 22 1 3.2851 0.2178 -3.9339 23 6 4.5292 1.1754 -5.3798 24 7 3.7641 1.1846 -6.4893 25 8 5.4003 2.0071 -5.2371 26 6 5.2967 0.3445 -3.1734 27 1 -0.4850 0.8401 0.0004 28 1 5.3014 -1.5830 0.1198 29 1 4.0963 -1.9146 1.3871 30 1 5.0553 -5.2416 0.1784 31 1 6.2868 -2.1932 -3.0771 32 1 5.1060 -2.8622 -1.9250 33 1 4.4197 -3.3122 -4.2647 34 1 3.2583 -2.2341 -3.4547 35 1 5.5223 -1.3465 -5.2994 36 1 3.7965 -1.4117 -5.7310 37 1 3.0676 0.5193 -6.6036 38 1 3.9101 1.8564 -7.1735 39 1 5.1523 1.3367 -2.7459 40 1 6.3137 0.2586 -3.5560 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:21 Heat of formation + Delta-G solvation = -154.404815 kcal Electronic energy + Delta-G solvation = -26552.564911 eV Core-core repulsion = 22753.686920 eV Total energy + Delta-G solvation = -3798.877991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66921 -39.69808 -38.73059 -36.53109 -35.77534 -34.49849 -33.52311 -32.23700 -30.69253 -30.46832 -28.03500 -25.11942 -23.70909 -22.54422 -21.62098 -20.75647 -19.77482 -18.89748 -17.75616 -17.39545 -17.08241 -16.36785 -16.16115 -15.77663 -15.48461 -15.14177 -14.86340 -14.43338 -14.13350 -13.67361 -13.49846 -13.12596 -12.91602 -12.67246 -12.42106 -12.26790 -11.99642 -11.94547 -11.71202 -11.30817 -11.16554 -11.05846 -10.70417 -10.48742 -10.38712 -10.23867 -10.10453 -9.97233 -9.82537 -9.51291 -9.41030 -8.60184 -8.34981 -7.74713 -6.23688 -4.03004 2.63113 2.93907 3.11235 3.36382 3.42068 3.62394 3.77484 3.89057 4.27942 4.50423 4.88421 4.99075 5.01315 5.11185 5.32930 5.35852 5.49558 5.53470 5.60985 5.67255 5.71935 5.81321 5.86411 5.89111 5.97416 6.14304 6.23713 6.34381 6.45049 6.59820 6.66200 6.79938 6.83055 6.95602 7.52051 7.78499 7.88836 8.30246 8.50220 8.68787 8.83368 9.35804 9.68688 10.81932 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.008110 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.482863 B = 3451.657696 C = 4798.715509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.100 3.900 3 Si 0.898 3.102 4 H -0.251 1.251 5 H -0.305 1.305 6 H -0.279 1.279 7 C -0.352 4.352 8 H 0.092 0.908 9 N -0.447 5.447 10 C 0.109 3.891 11 C 0.453 3.547 12 O -0.487 6.487 13 O -0.528 6.528 14 C 0.471 3.529 15 O -0.526 6.526 16 C -0.115 4.115 17 H 0.085 0.915 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.101 4.101 21 C -0.132 4.132 22 H 0.149 0.851 23 C 0.526 3.474 24 N -0.859 5.859 25 O -0.555 6.555 26 C -0.071 4.071 27 H 0.272 0.728 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.401 0.599 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.401 0.599 38 H 0.394 0.606 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 -5.229 -5.726 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.110 4.110 3 Si 0.727 3.273 4 H -0.176 1.176 5 H -0.233 1.233 6 H -0.205 1.205 7 C -0.478 4.478 8 H 0.110 0.890 9 N -0.169 5.169 10 C -0.018 4.018 11 C 0.293 3.707 12 O -0.372 6.372 13 O -0.340 6.340 14 C 0.261 3.739 15 O -0.407 6.407 16 C -0.137 4.137 17 H 0.103 0.897 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.139 4.139 21 C -0.152 4.152 22 H 0.166 0.834 23 C 0.313 3.687 24 N -0.422 5.422 25 O -0.433 6.433 26 C -0.109 4.109 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.259 0.741 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.230 0.770 38 H 0.224 0.776 39 H 0.087 0.913 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.856 -4.038 -5.859 12.980 hybrid contribution -0.008 0.010 -0.428 0.428 sum 10.848 -4.028 -6.286 13.169 Atomic orbital electron populations 1.69775 1.06847 1.28164 1.44622 1.25238 0.94780 0.99043 0.91968 0.86634 0.79211 0.82569 0.78863 1.17613 1.23326 1.20452 1.18724 0.84852 0.96161 1.48037 0.89035 1.43302 1.08380 1.45117 1.20151 1.21185 0.95657 0.85107 0.99803 1.24628 0.77146 0.90085 0.78859 1.90760 1.36405 1.79601 1.30474 1.84570 1.59980 1.23346 1.66080 1.20312 0.89434 0.83511 0.80615 1.90382 1.52668 1.40780 1.56837 1.21447 0.96431 0.97102 0.98713 0.89688 1.21591 0.99272 0.95155 0.98661 1.21444 1.01208 0.97399 0.95153 1.21455 1.01080 0.93467 0.97902 1.21915 1.06826 0.92739 0.93746 0.83388 1.20982 0.79903 0.85433 0.82419 1.43908 1.39238 1.36494 1.22594 1.90672 1.33554 1.40531 1.78545 1.21026 0.97940 0.98273 0.93676 0.91768 0.87925 0.86486 0.74147 0.91778 0.91604 0.92184 0.90184 0.92384 0.92072 0.77037 0.77581 0.91266 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.66 13.96 55.50 0.77 -24.89 16 2 C 0.10 2.83 4.78 -17.47 -0.08 2.74 16 3 Si 0.90 23.06 25.16 -169.99 -4.28 18.79 16 4 H -0.25 -6.73 6.24 56.52 0.35 -6.38 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.35 -9.56 9.54 -14.94 -0.14 -9.70 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.45 -10.06 1.64 -116.10 -0.19 -10.25 16 10 C 0.11 1.86 5.56 -5.19 -0.03 1.83 16 11 C 0.45 7.39 6.13 36.00 0.22 7.61 16 12 O -0.49 -9.72 16.00 -18.76 -0.30 -10.02 16 13 O -0.53 -6.38 13.42 -39.23 -0.53 -6.91 16 14 C 0.47 10.35 3.96 -10.98 -0.04 10.31 16 15 O -0.53 -13.25 8.86 5.55 0.05 -13.20 16 16 C -0.12 -1.97 2.21 -91.77 -0.20 -2.17 16 17 H 0.09 1.26 6.57 -51.94 -0.34 0.91 16 18 C -0.11 -1.64 5.32 -26.73 -0.14 -1.78 16 19 C -0.11 -1.79 5.70 -26.73 -0.15 -1.94 16 20 C -0.10 -1.41 5.10 -26.73 -0.14 -1.55 16 21 C -0.13 -2.22 2.24 -91.77 -0.21 -2.42 16 22 H 0.15 2.97 5.09 -51.93 -0.26 2.71 16 23 C 0.53 8.67 7.42 -10.99 -0.08 8.59 16 24 N -0.86 -10.32 8.77 31.22 0.27 -10.05 16 25 O -0.56 -10.99 16.82 5.56 0.09 -10.90 16 26 C -0.07 -1.23 3.77 -26.73 -0.10 -1.33 16 27 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.10 1.41 5.94 -51.93 -0.31 1.10 16 29 H 0.12 1.84 8.08 -51.93 -0.42 1.42 16 30 H 0.40 3.20 9.10 45.56 0.41 3.61 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.02 3.54 -51.93 -0.18 0.83 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.56 7.21 -51.93 -0.37 1.19 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.74 7.56 -51.93 -0.39 0.35 16 37 H 0.40 3.92 8.25 -40.82 -0.34 3.58 16 38 H 0.39 4.04 8.93 -40.82 -0.36 3.68 16 39 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 40 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -36.25 314.08 -4.75 -41.00 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -4.29 Total: 11.51 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -1.10 Total: 10.18 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.86 Total: -45.19 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.68 Total: -41.03 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.28 Total: 18.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.25 -4.75 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.401 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds