Wall clock time and date at job start Fri Apr 10 2020 17:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47028 * 2 1 4 4 O 1.42900 * 109.47293 * 119.99519 * 2 1 3 5 5 C 1.50697 * 109.47183 * 239.99536 * 2 1 3 6 6 C 1.35351 * 126.75191 * 125.00026 * 5 2 1 7 7 N 1.35311 * 106.17831 * 180.02562 * 6 5 2 8 8 C 1.46497 * 125.86870 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47298 * 124.99646 * 8 7 6 10 10 O 1.21289 * 120.00088 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99954 * 179.97438 * 9 8 7 12 12 C 1.37091 * 120.00082 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00021 * 11.62089 * 12 11 9 14 14 C 1.38960 * 120.00189 * 191.61802 * 12 11 9 15 15 N 1.31408 * 119.99932 * 20.78926 * 14 12 11 16 16 Si 1.86794 * 120.00006 * 200.78909 * 14 12 11 17 17 H 1.48496 * 109.47275 * 84.98595 * 16 14 12 18 18 H 1.48501 * 109.46941 * 204.99005 * 16 14 12 19 19 H 1.48503 * 109.47219 * 324.98488 * 16 14 12 20 20 C 1.46501 * 120.00040 * 359.72816 * 11 9 8 21 21 C 1.50699 * 109.47353 * 84.71760 * 20 11 9 22 22 O 1.20821 * 120.00084 * 0.02562 * 21 20 11 23 23 O 1.34228 * 120.00141 * 180.02562 * 21 20 11 24 24 N 1.28718 * 108.25979 * 0.25633 * 7 6 5 25 25 N 1.28636 * 110.17873 * 359.56710 * 24 7 6 26 26 H 1.09009 * 109.46919 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47380 * 300.00205 * 1 2 3 28 28 H 1.08993 * 109.47360 * 60.00504 * 1 2 3 29 29 H 0.96697 * 113.99914 * 60.00058 * 4 2 1 30 30 H 1.08006 * 126.91123 * 359.97438 * 6 5 2 31 31 H 1.09001 * 109.47247 * 4.98895 * 8 7 6 32 32 H 1.09005 * 109.46609 * 244.99155 * 8 7 6 33 33 H 0.96989 * 120.00433 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.47447 * 204.71971 * 20 11 9 35 35 H 1.09002 * 109.47036 * 324.71933 * 20 11 9 36 36 H 0.96705 * 117.00275 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0323 -0.7105 -1.2304 6 6 2.8887 -0.2193 -2.1563 7 7 3.0534 -1.1992 -3.0748 8 6 3.8985 -1.1230 -4.2690 9 6 4.8694 -2.2756 -4.2718 10 8 4.8570 -3.0812 -3.3652 11 7 5.7515 -2.4112 -5.2818 12 6 6.6350 -3.4594 -5.2841 13 1 6.5070 -4.2751 -4.5879 14 6 7.6953 -3.4725 -6.1822 15 7 8.1041 -2.3514 -6.7325 16 14 8.5395 -5.0837 -6.6071 17 1 7.7931 -5.7611 -7.6976 18 1 9.9295 -4.8115 -7.0535 19 1 8.5673 -5.9593 -5.4081 20 6 5.7625 -1.4415 -6.3799 21 6 6.6015 -0.2517 -5.9910 22 8 7.1359 -0.2173 -4.9079 23 8 6.7553 0.7701 -6.8478 24 7 2.3361 -2.2079 -2.7215 25 7 1.7191 -1.9505 -1.6226 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.7210 -1.5951 1.2330 30 1 3.3477 0.7584 -2.1614 31 1 4.4504 -0.1830 -4.2643 32 1 3.2731 -1.1726 -5.1604 33 1 8.8439 -2.3605 -7.3596 34 1 6.1831 -1.9068 -7.2713 35 1 4.7433 -1.1153 -6.5868 36 1 7.3028 1.5110 -6.5539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609790380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:36 Heat of formation + Delta-G solvation = -55.203229 kcal Electronic energy + Delta-G solvation = -24524.418359 eV Core-core repulsion = 20626.301728 eV Total energy + Delta-G solvation = -3898.116631 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.01249 -39.74113 -38.44524 -37.39854 -35.56967 -34.86427 -33.99693 -32.04632 -31.81348 -29.60886 -28.50411 -27.83860 -24.89088 -24.00841 -22.12645 -21.43809 -21.04283 -19.34132 -17.46076 -17.39587 -17.26311 -16.92167 -16.16653 -15.94584 -15.74091 -15.28078 -14.81940 -14.69183 -14.47939 -14.25769 -14.16028 -13.82475 -12.85515 -12.74227 -12.47909 -12.09126 -12.04824 -11.91295 -11.77552 -11.57782 -11.09547 -11.04257 -10.73037 -10.67280 -10.54454 -10.47055 -10.25647 -10.00842 -9.94581 -9.26329 -9.00510 -8.80358 -8.20584 -6.66278 -4.09638 1.84301 2.52274 2.72348 2.98139 3.12386 3.16422 3.20363 3.34484 3.78059 4.00758 4.31328 4.37770 4.53336 4.70929 4.79354 4.90410 5.00307 5.06464 5.13704 5.22342 5.42702 5.57531 5.64639 5.78591 5.96914 6.13081 6.19026 6.31469 6.41896 6.74384 7.23104 7.35499 7.60150 7.65832 8.11622 8.73102 8.80080 8.83564 9.02428 9.50041 10.41329 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.004103 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.083265 B = 6823.436254 C = 7590.845830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.198 3.802 3 H 0.110 0.890 4 O -0.558 6.558 5 C -0.069 4.069 6 C -0.039 4.039 7 N -0.265 5.265 8 C 0.098 3.902 9 C 0.443 3.557 10 O -0.546 6.546 11 N -0.421 5.421 12 C -0.301 4.301 13 H 0.113 0.887 14 C 0.030 3.970 15 N -0.884 5.884 16 Si 0.936 3.064 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.133 3.867 21 C 0.487 3.513 22 O -0.507 6.507 23 O -0.530 6.530 24 N -0.042 5.042 25 N -0.273 5.273 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.382 0.618 30 H 0.187 0.813 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.275 0.725 34 H 0.146 0.854 35 H 0.077 0.923 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 9.588 0.342 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.136 3.864 3 H 0.128 0.872 4 O -0.363 6.363 5 C -0.207 4.207 6 C -0.190 4.190 7 N -0.058 5.058 8 C -0.028 4.028 9 C 0.229 3.771 10 O -0.426 6.426 11 N -0.141 5.141 12 C -0.428 4.428 13 H 0.131 0.869 14 C -0.172 4.172 15 N -0.524 5.524 16 Si 0.762 3.238 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.193 1.193 20 C 0.006 3.994 21 C 0.327 3.673 22 O -0.393 6.393 23 O -0.341 6.341 24 N -0.023 5.023 25 N -0.141 5.141 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.231 0.769 30 H 0.204 0.796 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.290 8.018 0.599 12.286 hybrid contribution 1.463 0.660 -0.351 1.643 sum -7.827 8.678 0.247 11.689 Atomic orbital electron populations 1.22424 0.95303 1.03431 1.02345 1.19974 0.92879 0.94495 0.79012 0.87181 1.86535 1.77570 1.29854 1.42355 1.22673 1.02758 0.94435 1.00812 1.23334 1.04809 0.97769 0.93112 1.46816 1.30195 1.09975 1.18769 1.22032 0.93264 1.02532 0.84940 1.19521 0.85736 0.87886 0.84002 1.90668 1.72639 1.43974 1.35335 1.43405 1.30586 1.22781 1.17361 1.19825 1.05862 0.97607 1.19513 0.86945 1.25262 0.95950 0.98794 0.97203 1.69778 1.27038 1.25328 1.30274 0.85772 0.77833 0.80976 0.79232 1.19943 1.20925 1.19252 1.21015 0.96481 0.86772 0.95094 1.23903 0.79769 0.81938 0.81672 1.90649 1.45863 1.78257 1.24546 1.84526 1.68481 1.30857 1.50256 1.78412 1.04527 1.10038 1.09280 1.74977 1.19982 1.13362 1.05774 0.91425 0.91560 0.91666 0.76945 0.79608 0.86436 0.86607 0.91489 0.83651 0.90530 0.74859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.51 37.16 0.35 -1.38 16 2 C 0.20 2.34 4.09 -27.89 -0.11 2.23 16 3 H 0.11 1.07 8.12 -51.93 -0.42 0.65 16 4 O -0.56 -7.43 13.33 -35.23 -0.47 -7.90 16 5 C -0.07 -1.06 6.10 -82.78 -0.50 -1.56 16 6 C -0.04 -0.59 11.49 -17.05 -0.20 -0.79 16 7 N -0.26 -4.78 3.19 -62.44 -0.20 -4.98 16 8 C 0.10 1.65 5.55 -5.20 -0.03 1.62 16 9 C 0.44 10.17 7.46 -10.99 -0.08 10.09 16 10 O -0.55 -15.01 15.30 5.55 0.08 -14.92 16 11 N -0.42 -9.83 2.17 -116.09 -0.25 -10.08 16 12 C -0.30 -7.87 9.43 -14.93 -0.14 -8.01 16 13 H 0.11 3.15 7.30 -52.49 -0.38 2.77 16 14 C 0.03 0.75 4.96 -17.47 -0.09 0.66 16 15 N -0.88 -21.50 9.26 55.50 0.51 -20.98 16 16 Si 0.94 19.67 29.60 -169.99 -5.03 14.64 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 C 0.13 2.55 4.97 -5.19 -0.03 2.52 16 21 C 0.49 9.51 6.05 36.01 0.22 9.72 16 22 O -0.51 -11.94 17.04 -18.75 -0.32 -12.25 16 23 O -0.53 -8.18 13.42 -39.25 -0.53 -8.71 16 24 N -0.04 -0.87 12.14 60.35 0.73 -0.14 16 25 N -0.27 -5.09 12.40 33.29 0.41 -4.68 16 26 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.38 4.41 9.04 45.56 0.41 4.82 16 30 H 0.19 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.12 1.72 7.49 -51.93 -0.39 1.33 16 32 H 0.12 1.54 7.40 -51.93 -0.38 1.16 16 33 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 34 H 0.15 2.97 6.01 -51.93 -0.31 2.66 16 35 H 0.08 1.10 6.66 -51.93 -0.35 0.75 16 36 H 0.39 4.49 9.10 45.56 0.41 4.90 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -35.80 320.70 -3.06 -38.87 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -2.24 Total: 11.18 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -0.61 Total: 15.11 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 1.21 Total: -40.86 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -1.23 Total: -43.78 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.80 -3.06 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609790380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.335 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds