Wall clock time and date at job start Fri Apr 10 2020 17:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47028 * 2 1 4 4 O 1.42900 * 109.47293 * 119.99519 * 2 1 3 5 5 C 1.50697 * 109.47183 * 239.99536 * 2 1 3 6 6 C 1.35351 * 126.75191 * 125.00026 * 5 2 1 7 7 N 1.35311 * 106.17831 * 180.02562 * 6 5 2 8 8 C 1.46497 * 125.86870 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47298 * 124.99646 * 8 7 6 10 10 O 1.21289 * 120.00088 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99954 * 179.97438 * 9 8 7 12 12 C 1.37091 * 120.00082 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00021 * 11.62089 * 12 11 9 14 14 C 1.38960 * 120.00189 * 191.61802 * 12 11 9 15 15 N 1.31408 * 119.99932 * 20.78926 * 14 12 11 16 16 Si 1.86794 * 120.00006 * 200.78909 * 14 12 11 17 17 H 1.48496 * 109.47275 * 84.98595 * 16 14 12 18 18 H 1.48501 * 109.46941 * 204.99005 * 16 14 12 19 19 H 1.48503 * 109.47219 * 324.98488 * 16 14 12 20 20 C 1.46501 * 120.00040 * 359.72816 * 11 9 8 21 21 C 1.50699 * 109.47353 * 84.71760 * 20 11 9 22 22 O 1.20821 * 120.00084 * 0.02562 * 21 20 11 23 23 O 1.34228 * 120.00141 * 180.02562 * 21 20 11 24 24 N 1.28718 * 108.25979 * 0.25633 * 7 6 5 25 25 N 1.28636 * 110.17873 * 359.56710 * 24 7 6 26 26 H 1.09009 * 109.46919 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47380 * 300.00205 * 1 2 3 28 28 H 1.08993 * 109.47360 * 60.00504 * 1 2 3 29 29 H 0.96697 * 113.99914 * 60.00058 * 4 2 1 30 30 H 1.08006 * 126.91123 * 359.97438 * 6 5 2 31 31 H 1.09001 * 109.47247 * 4.98895 * 8 7 6 32 32 H 1.09005 * 109.46609 * 244.99155 * 8 7 6 33 33 H 0.96989 * 120.00433 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.47447 * 204.71971 * 20 11 9 35 35 H 1.09002 * 109.47036 * 324.71933 * 20 11 9 36 36 H 0.96705 * 117.00275 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0323 -0.7105 -1.2304 6 6 2.8887 -0.2193 -2.1563 7 7 3.0534 -1.1992 -3.0748 8 6 3.8985 -1.1230 -4.2690 9 6 4.8694 -2.2756 -4.2718 10 8 4.8570 -3.0812 -3.3652 11 7 5.7515 -2.4112 -5.2818 12 6 6.6350 -3.4594 -5.2841 13 1 6.5070 -4.2751 -4.5879 14 6 7.6953 -3.4725 -6.1822 15 7 8.1041 -2.3514 -6.7325 16 14 8.5395 -5.0837 -6.6071 17 1 7.7931 -5.7611 -7.6976 18 1 9.9295 -4.8115 -7.0535 19 1 8.5673 -5.9593 -5.4081 20 6 5.7625 -1.4415 -6.3799 21 6 6.6015 -0.2517 -5.9910 22 8 7.1359 -0.2173 -4.9079 23 8 6.7553 0.7701 -6.8478 24 7 2.3361 -2.2079 -2.7215 25 7 1.7191 -1.9505 -1.6226 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.7210 -1.5951 1.2330 30 1 3.3477 0.7584 -2.1614 31 1 4.4504 -0.1830 -4.2643 32 1 3.2731 -1.1726 -5.1604 33 1 8.8439 -2.3605 -7.3596 34 1 6.1831 -1.9068 -7.2713 35 1 4.7433 -1.1153 -6.5868 36 1 7.3028 1.5110 -6.5539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609790380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:35 Heat of formation + Delta-G solvation = -85.700282 kcal Electronic energy + Delta-G solvation = -24525.740810 eV Core-core repulsion = 20626.301728 eV Total energy + Delta-G solvation = -3899.439083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.28732 -41.32905 -40.06415 -38.39935 -37.16472 -36.47451 -35.40315 -33.85523 -32.93758 -30.69235 -29.95237 -29.37028 -26.65429 -25.04680 -23.48342 -22.88612 -22.31013 -20.84103 -19.13383 -18.85806 -18.58440 -18.45308 -17.50675 -17.32416 -17.17876 -16.40705 -16.26327 -16.22386 -15.89606 -15.71567 -15.57773 -15.02174 -14.45395 -14.06406 -13.70342 -13.58755 -13.51055 -13.31908 -12.90966 -12.84001 -12.68326 -12.43190 -12.21047 -12.18013 -12.09652 -11.88676 -11.63536 -11.45217 -11.20380 -11.00533 -10.55408 -10.22728 -10.01625 -8.52682 -6.02966 0.58882 1.27879 1.30212 1.42131 1.47316 1.52232 1.58579 1.74819 2.16782 2.46486 2.72953 3.01084 3.22769 3.48761 3.63895 3.69943 3.80710 3.84652 4.05199 4.23391 4.31565 4.41164 4.70745 4.77348 4.84284 4.90130 5.10773 5.12677 5.37127 5.39124 5.48519 5.86685 5.92250 6.27120 6.67143 6.98985 7.16410 7.37782 7.50322 7.73580 8.52166 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.004103 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.083265 B = 6823.436254 C = 7590.845830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.196 3.804 3 H 0.139 0.861 4 O -0.572 6.572 5 C -0.074 4.074 6 C -0.033 4.033 7 N -0.273 5.273 8 C 0.108 3.892 9 C 0.431 3.569 10 O -0.607 6.607 11 N -0.430 5.430 12 C -0.340 4.340 13 H 0.075 0.925 14 C 0.008 3.992 15 N -0.887 5.887 16 Si 0.990 3.010 17 H -0.259 1.259 18 H -0.275 1.275 19 H -0.285 1.285 20 C 0.126 3.874 21 C 0.497 3.503 22 O -0.553 6.553 23 O -0.513 6.513 24 N -0.097 5.097 25 N -0.294 5.294 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.386 0.614 30 H 0.231 0.769 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.279 0.721 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 12.133 -0.839 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.135 3.865 3 H 0.156 0.844 4 O -0.378 6.378 5 C -0.213 4.213 6 C -0.184 4.184 7 N -0.066 5.066 8 C -0.017 4.017 9 C 0.219 3.781 10 O -0.491 6.491 11 N -0.150 5.150 12 C -0.467 4.467 13 H 0.093 0.907 14 C -0.194 4.194 15 N -0.526 5.526 16 Si 0.814 3.186 17 H -0.183 1.183 18 H -0.200 1.200 19 H -0.210 1.210 20 C 0.001 3.999 21 C 0.339 3.661 22 O -0.443 6.443 23 O -0.325 6.325 24 N -0.076 5.076 25 N -0.161 5.161 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.235 0.765 30 H 0.248 0.752 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.673 10.608 -0.651 14.371 hybrid contribution 1.613 -0.028 0.010 1.613 sum -8.060 10.580 -0.641 13.316 Atomic orbital electron populations 1.22356 0.93797 1.02899 1.03663 1.20339 0.94104 0.95006 0.77032 0.84358 1.86511 1.78045 1.30360 1.42933 1.23374 1.02528 0.93464 1.01914 1.24153 1.03849 0.98715 0.91701 1.46953 1.30003 1.10222 1.19444 1.22074 0.92625 1.00517 0.86449 1.20486 0.86075 0.88619 0.82929 1.90626 1.74374 1.46552 1.37583 1.43501 1.29918 1.23027 1.18518 1.19589 1.07916 0.98705 1.20493 0.90681 1.25837 0.95817 1.01350 0.96376 1.69841 1.26898 1.26045 1.29786 0.84998 0.77378 0.77692 0.78552 1.18334 1.20021 1.21019 1.21216 0.99606 0.85995 0.93034 1.23790 0.78753 0.82428 0.81087 1.90648 1.47667 1.79402 1.26541 1.84454 1.68554 1.30765 1.48738 1.78385 1.06644 1.11834 1.10761 1.74908 1.20358 1.15156 1.05667 0.92913 0.89696 0.90800 0.76508 0.75219 0.83540 0.82678 0.91059 0.84818 0.85083 0.72369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.51 71.98 0.68 -2.29 16 2 C 0.20 4.22 4.09 29.85 0.12 4.34 16 3 H 0.14 2.18 8.12 -2.39 -0.02 2.16 16 4 O -0.57 -14.57 13.33 -148.98 -1.99 -16.55 16 5 C -0.07 -2.17 6.10 41.60 0.25 -1.92 16 6 C -0.03 -0.92 11.49 83.49 0.96 0.04 16 7 N -0.27 -9.54 3.19 -351.46 -1.12 -10.66 16 8 C 0.11 3.42 5.55 85.63 0.48 3.90 16 9 C 0.43 19.99 7.46 87.66 0.65 20.65 16 10 O -0.61 -34.92 15.30 -3.06 -0.05 -34.97 16 11 N -0.43 -20.17 2.17 -639.60 -1.39 -21.56 16 12 C -0.34 -18.33 9.43 84.04 0.79 -17.54 16 13 H 0.08 4.51 7.30 -2.91 -0.02 4.49 16 14 C 0.01 0.42 4.96 84.93 0.42 0.84 16 15 N -0.89 -42.35 9.26 21.67 0.20 -42.15 16 16 Si 0.99 40.52 29.60 68.60 2.03 42.55 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 18 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 C 0.13 4.61 4.97 85.63 0.43 5.03 16 21 C 0.50 18.23 6.05 71.24 0.43 18.67 16 22 O -0.55 -25.33 17.04 21.98 0.37 -24.95 16 23 O -0.51 -13.98 13.42 -51.39 -0.69 -14.67 16 24 N -0.10 -4.03 12.14 37.02 0.45 -3.58 16 25 N -0.29 -11.03 12.40 -48.60 -0.60 -11.63 16 26 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.39 8.88 9.04 -74.06 -0.67 8.21 16 30 H 0.23 3.97 8.06 -2.91 -0.02 3.94 16 31 H 0.15 3.78 7.49 -2.39 -0.02 3.76 16 32 H 0.16 3.60 7.40 -2.38 -0.02 3.59 16 33 H 0.28 12.61 8.31 -92.72 -0.77 11.84 16 34 H 0.13 5.25 6.01 -2.39 -0.01 5.24 16 35 H 0.13 3.25 6.66 -2.39 -0.02 3.23 16 36 H 0.42 7.93 9.10 -74.05 -0.67 7.25 16 Total: -1.00 -82.61 320.70 2.26 -80.35 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.18 Total: 26.10 kcal Atomic # 6 Polarization: 26.50 SS G_CDS: 5.22 Total: 31.72 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -2.46 Total: -89.59 kcal Atomic # 8 Polarization: -88.80 SS G_CDS: -2.35 Total: -91.14 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -82.61 2.26 -80.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609790380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.348 kcal (2) G-P(sol) polarization free energy of solvation -82.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds