Wall clock time and date at job start Fri Apr 10 2020 17:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47205 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 225.65778 * 3 2 1 5 5 N 1.46896 * 109.46817 * 281.93642 * 4 3 2 6 6 C 1.47972 * 110.99876 * 170.00119 * 5 4 3 7 7 C 1.53935 * 86.18214 * 222.42042 * 6 5 4 8 8 O 1.42894 * 113.73226 * 269.25884 * 7 6 5 9 9 C 1.52996 * 113.73370 * 138.07783 * 7 6 5 10 10 N 1.46498 * 109.47059 * 184.99789 * 9 7 6 11 11 C 1.34777 * 119.99828 * 179.72339 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 S 1.81000 * 109.47389 * 180.02562 * 13 11 10 15 15 C 1.76198 * 99.99715 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00516 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99710 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00163 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46661 * 60.00586 * 19 17 15 21 21 H 1.48501 * 109.47391 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47355 * 300.00441 * 19 17 15 23 23 C 1.47965 * 111.00100 * 70.64572 * 5 4 3 24 24 H 1.09000 * 109.47200 * 32.40587 * 1 2 3 25 25 H 1.09002 * 109.46729 * 152.40320 * 1 2 3 26 26 H 1.08997 * 109.46942 * 272.40224 * 1 2 3 27 27 H 1.09004 * 109.47038 * 161.94401 * 4 3 2 28 28 H 1.08997 * 109.47196 * 41.93956 * 4 3 2 29 29 H 1.09001 * 113.75645 * 108.10148 * 6 5 4 30 30 H 1.09000 * 113.85718 * 336.75347 * 6 5 4 31 31 H 0.96702 * 114.00177 * 178.09891 * 8 7 6 32 32 H 1.09004 * 109.47066 * 65.00057 * 9 7 6 33 33 H 1.08994 * 109.46974 * 305.00204 * 9 7 6 34 34 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 35 35 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 36 36 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 37 37 H 0.96991 * 119.99795 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.75659 * 23.26332 * 23 5 4 39 39 H 1.08996 * 113.76175 * 251.89901 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1181 0.0016 0.0005 5 7 4.6074 -0.2844 1.3557 6 6 6.0670 -0.5276 1.3520 7 6 5.7724 -1.6866 2.3214 8 8 5.8169 -1.3096 3.6990 9 6 6.5727 -2.9563 2.0244 10 7 6.1361 -4.0296 2.9209 11 6 6.7019 -5.2499 2.8366 12 8 7.5761 -5.4581 2.0221 13 6 6.2485 -6.3558 3.7546 14 16 7.1913 -7.8595 3.3992 15 6 6.4778 -8.9542 4.5812 16 1 5.6974 -8.6033 5.2403 17 6 6.9180 -10.2679 4.6647 18 7 7.8688 -10.6958 3.8611 19 14 6.1622 -11.4284 5.9182 20 1 4.7050 -11.5540 5.6609 21 1 6.8020 -12.7638 5.8056 22 1 6.3789 -10.8900 7.2850 23 6 4.3535 -1.6947 1.7245 24 1 -0.3633 0.8676 -0.5507 25 1 -0.3633 -0.9108 -0.4761 26 1 -0.3633 0.0431 1.0267 27 1 4.4807 0.9790 -0.3179 28 1 4.4822 -0.7625 -0.6862 29 1 6.6479 0.2803 1.7971 30 1 6.4577 -0.8506 0.3871 31 1 5.6040 -2.0278 4.3104 32 1 7.6338 -2.7618 2.1803 33 1 6.4066 -3.2568 0.9899 34 1 5.4368 -3.8632 3.5721 35 1 6.4147 -6.0593 4.7902 36 1 5.1869 -6.5463 3.5971 37 1 8.1766 -11.6137 3.9197 38 1 4.2413 -2.3593 0.8677 39 1 3.5654 -1.8194 2.4670 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672052509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:43 Heat of formation + Delta-G solvation = 1.830846 kcal Electronic energy + Delta-G solvation = -20697.314254 eV Core-core repulsion = 17347.964021 eV Total energy + Delta-G solvation = -3349.350234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99810 -39.06731 -36.47697 -34.42326 -34.18367 -32.45801 -31.34730 -29.88863 -28.08745 -26.77494 -26.16530 -25.45951 -22.86943 -20.60073 -20.32142 -18.21977 -17.32929 -17.06298 -16.59029 -16.47052 -15.77300 -15.41040 -15.16743 -14.83052 -14.62595 -14.40098 -14.01183 -13.92426 -13.80150 -13.59174 -13.23661 -13.15093 -12.79583 -12.62084 -12.43681 -12.06236 -11.85547 -11.22136 -11.07810 -11.05976 -10.79421 -10.43745 -10.11840 -10.06308 -9.85965 -9.54051 -9.23113 -9.10291 -9.03943 -8.28869 -6.54236 -6.24538 -3.95787 2.28668 2.42348 2.89503 2.98111 3.21628 3.24490 3.27558 3.36913 3.56778 3.68108 3.93280 4.01694 4.17526 4.27699 4.69457 4.77244 4.88548 5.00498 5.05734 5.10621 5.14865 5.20563 5.23432 5.28586 5.33713 5.36902 5.49341 5.52410 5.56542 5.69943 5.82163 5.86333 6.07211 6.37201 6.49497 7.21969 7.35130 7.50830 7.56545 8.31941 8.47761 9.20672 10.82825 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.021223 B = 0.002533 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.004801 B =11049.713027 C =11752.253801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.177 4.177 3 C -0.186 4.186 4 C 0.132 3.868 5 N -0.464 5.464 6 C 0.021 3.979 7 C 0.096 3.904 8 O -0.525 6.525 9 C 0.102 3.898 10 N -0.740 5.740 11 C 0.534 3.466 12 O -0.513 6.513 13 C -0.154 4.154 14 S -0.059 6.059 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.019 4.019 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.379 0.621 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.395 0.605 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.082 0.918 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.555 21.919 -5.532 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.179 4.179 3 C -0.186 4.186 4 C 0.005 3.995 5 N -0.187 5.187 6 C -0.107 4.107 7 C 0.054 3.946 8 O -0.330 6.330 9 C -0.023 4.023 10 N -0.396 5.396 11 C 0.320 3.680 12 O -0.387 6.387 13 C -0.305 4.305 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.148 4.148 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.228 0.772 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.229 0.771 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.069 22.540 -6.841 25.241 hybrid contribution -1.772 -1.549 1.644 2.871 sum -10.841 20.992 -5.197 24.191 Atomic orbital electron populations 1.18877 0.84567 1.03030 1.03202 1.22431 0.93907 1.01429 1.00085 1.21892 0.93152 1.01544 1.02013 1.19585 0.85426 1.02781 0.91672 1.68712 1.06323 1.21972 1.21672 1.24108 0.91126 0.97568 0.97946 1.22863 0.94287 0.93462 0.84034 1.86571 1.92504 1.40037 1.13905 1.21895 0.99731 0.85457 0.95192 1.45910 1.42532 1.11139 1.40025 1.20338 0.81354 0.82315 0.83957 1.90716 1.29824 1.81454 1.36696 1.23536 1.05460 1.00201 1.01256 1.85412 1.49264 0.98767 1.49829 1.22819 1.25347 0.97921 1.22407 0.90938 1.24999 0.94913 0.97295 0.96372 1.70003 1.26554 1.17317 1.36392 0.86216 0.79220 0.79213 0.80806 1.19933 1.20796 1.19907 1.24735 0.98585 0.90267 1.01224 0.90185 0.90163 0.90011 0.88190 0.91616 0.87581 0.89168 0.77246 0.90205 0.90431 0.77127 0.89067 0.89147 0.92088 0.89982 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.25 10.32 34.37 0.35 0.11 16 2 C -0.18 -1.74 14.13 -37.12 -0.52 -2.27 16 3 C -0.19 -1.92 13.11 -37.12 -0.49 -2.41 16 4 C 0.13 1.11 5.31 -6.61 -0.04 1.07 16 5 N -0.46 -4.36 6.24 -241.66 -1.51 -5.87 16 6 C 0.02 0.17 7.37 -2.76 -0.02 0.15 16 7 C 0.10 0.85 1.52 -89.69 -0.14 0.72 16 8 O -0.52 -5.10 13.50 -35.23 -0.48 -5.57 16 9 C 0.10 1.08 5.28 -4.04 -0.02 1.06 16 10 N -0.74 -8.83 5.34 -60.30 -0.32 -9.15 16 11 C 0.53 9.40 7.85 -10.98 -0.09 9.31 16 12 O -0.51 -11.21 15.86 5.55 0.09 -11.13 16 13 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 14 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 15 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 16 H 0.07 1.91 7.80 -52.49 -0.41 1.51 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 19 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C -0.02 -0.17 6.85 -2.76 -0.02 -0.19 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.47 7.69 -51.93 -0.40 0.07 16 29 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.55 7.75 -51.93 -0.40 0.14 16 31 H 0.38 2.61 7.61 45.56 0.35 2.95 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 34 H 0.39 3.47 7.31 -40.82 -0.30 3.17 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.08 0.71 7.67 -51.93 -0.40 0.31 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -36.14 353.97 -8.86 -45.00 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.92 Total: 2.19 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.55 Total: -7.97 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -1.10 Total: -40.21 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.39 Total: -16.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.14 -8.86 -45.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672052509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.833 kcal (2) G-P(sol) polarization free energy of solvation -36.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds