Wall clock time and date at job start Fri Apr 10 2020 17:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.49005 * 2 1 4 4 C 1.54575 * 110.44008 * 237.51511 * 2 1 3 5 5 C 1.54492 * 102.14914 * 214.40794 * 4 2 1 6 6 H 1.09001 * 110.37031 * 256.40082 * 5 4 2 7 7 N 1.46499 * 110.36998 * 134.17961 * 5 4 2 8 8 C 1.34777 * 119.99665 * 155.27995 * 7 5 4 9 9 O 1.21583 * 120.00270 * 359.72083 * 8 7 5 10 10 N 1.34775 * 119.99585 * 179.72218 * 8 7 5 11 11 C 1.47429 * 125.64913 * 359.69312 * 10 8 7 12 12 C 1.55131 * 104.72085 * 155.81340 * 11 10 8 13 13 C 1.55160 * 101.48645 * 37.29437 * 12 11 10 14 14 O 1.42903 * 110.72108 * 82.69514 * 13 12 11 15 15 C 1.50700 * 110.72135 * 205.96527 * 13 12 11 16 16 H 1.07998 * 120.00049 * 354.98116 * 15 13 12 17 17 C 1.37882 * 119.99860 * 174.97385 * 15 13 12 18 18 N 1.31513 * 120.00101 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99554 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47438 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47046 * 120.00238 * 19 17 15 22 22 H 1.48494 * 109.47150 * 240.00146 * 19 17 15 23 23 C 1.47023 * 125.64494 * 179.97438 * 10 8 7 24 24 C 1.51336 * 104.82130 * 15.34360 * 5 4 2 25 25 O 1.20822 * 125.09421 * 182.29496 * 24 5 4 26 26 O 1.34057 * 109.80972 * 2.31320 * 24 5 4 27 27 H 1.09004 * 109.46953 * 182.48699 * 1 2 3 28 28 H 1.08996 * 109.47084 * 302.48459 * 1 2 3 29 29 H 1.09000 * 109.47743 * 62.48734 * 1 2 3 30 30 H 1.08999 * 110.86814 * 96.24216 * 4 2 1 31 31 H 1.09004 * 111.04764 * 332.65088 * 4 2 1 32 32 H 0.97001 * 119.99790 * 334.99708 * 7 5 4 33 33 H 1.08997 * 110.36623 * 274.74342 * 11 10 8 34 34 H 1.08995 * 110.36692 * 37.07015 * 11 10 8 35 35 H 1.08995 * 111.19675 * 279.19420 * 12 11 10 36 36 H 1.09002 * 110.93695 * 155.28387 * 12 11 10 37 37 H 0.96695 * 113.99885 * 185.02565 * 14 13 12 38 38 H 0.96994 * 119.99661 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.88380 * 300.43914 * 23 10 8 40 40 H 1.08994 * 109.88427 * 61.60742 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0698 -0.7779 -1.2218 5 6 3.3509 -1.4277 -0.6534 6 1 4.2344 -0.8928 -1.0018 7 7 3.4233 -2.8381 -1.0429 8 6 4.6177 -3.4593 -1.1061 9 8 5.6356 -2.8478 -0.8448 10 7 4.6838 -4.7583 -1.4591 11 6 3.5334 -5.6172 -1.7942 12 6 4.1247 -6.7354 -2.6924 13 6 5.5048 -6.9714 -2.0237 14 8 5.3798 -7.8474 -0.9016 15 6 6.4940 -7.5176 -3.0208 16 1 6.1713 -7.7658 -4.0211 17 6 7.8110 -7.7004 -2.6560 18 7 8.2039 -7.3984 -1.4378 19 14 9.0373 -8.3768 -3.8922 20 1 8.3487 -8.6339 -5.1826 21 1 10.1260 -7.3887 -4.1010 22 1 9.6121 -9.6450 -3.3761 23 6 5.9147 -5.5550 -1.5681 24 6 3.2148 -1.3025 0.8487 25 8 4.0416 -1.6614 1.6534 26 8 2.0394 -0.7340 1.1525 27 1 -0.3633 -1.0267 0.0446 28 1 -0.3633 0.5519 0.8668 29 1 -0.3634 0.4747 -0.9114 30 1 2.3091 -0.0985 -2.0398 31 1 1.3598 -1.5387 -1.5464 32 1 2.6112 -3.3260 -1.2514 33 1 3.1017 -6.0434 -0.8886 34 1 2.7823 -5.0485 -2.3423 35 1 4.2422 -6.3939 -3.7208 36 1 3.5108 -7.6350 -2.6493 37 1 6.1994 -7.9666 -0.4025 38 1 9.1304 -7.5274 -1.1811 39 1 6.5821 -5.1073 -2.3045 40 1 6.4100 -5.6064 -0.5986 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001683795670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:53 Heat of formation + Delta-G solvation = -150.885191 kcal Electronic energy + Delta-G solvation = -24978.411704 eV Core-core repulsion = 21179.686335 eV Total energy + Delta-G solvation = -3798.725369 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.34398 -39.54059 -37.65616 -37.41828 -34.86241 -34.28230 -32.74054 -32.22190 -30.49621 -29.35088 -27.73149 -25.38907 -24.60215 -22.80500 -22.38534 -21.12823 -19.76268 -19.56147 -17.99631 -17.45719 -17.04168 -16.83415 -16.59070 -15.44470 -15.22924 -14.92480 -14.54984 -14.25024 -14.11629 -13.96914 -13.31652 -13.25081 -13.00419 -12.92497 -12.77255 -12.38455 -12.24257 -12.13156 -11.70489 -11.51055 -11.39987 -11.05452 -10.85408 -10.83703 -10.68776 -10.67396 -10.46096 -10.17218 -9.70322 -9.32048 -8.97432 -8.67915 -8.31454 -7.82389 -6.26974 -4.36050 1.91045 2.75115 3.15502 3.21957 3.30228 3.33208 3.50897 3.82872 3.98860 4.13870 4.27924 4.38887 4.41010 4.69165 4.89044 5.00512 5.12449 5.29267 5.32190 5.33377 5.44989 5.63287 5.64373 5.75493 5.97325 6.05432 6.40917 6.49552 6.59246 6.68183 6.87524 6.93487 7.21163 7.29662 7.44330 7.55069 7.74189 8.03518 8.41696 8.67660 9.01391 9.30195 9.38919 10.80828 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.003503 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.126611 B = 7990.300795 C = 8222.161429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 H 0.099 0.901 4 C -0.159 4.159 5 C 0.110 3.890 6 H 0.131 0.869 7 N -0.734 5.734 8 C 0.716 3.284 9 O -0.582 6.582 10 N -0.627 5.627 11 C 0.101 3.899 12 C -0.115 4.115 13 C 0.248 3.752 14 O -0.585 6.585 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.123 3.877 24 C 0.464 3.536 25 O -0.427 6.427 26 O -0.348 6.348 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.399 0.601 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.383 0.617 38 H 0.270 0.730 39 H 0.066 0.934 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.388 13.068 -1.943 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 H 0.117 0.883 4 C -0.197 4.197 5 C 0.001 3.999 6 H 0.148 0.852 7 N -0.394 5.394 8 C 0.418 3.582 9 O -0.459 6.459 10 N -0.364 5.364 11 C -0.022 4.022 12 C -0.153 4.153 13 C 0.207 3.793 14 O -0.394 6.394 15 C -0.576 4.576 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.530 5.530 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.001 3.999 24 C 0.299 3.701 25 O -0.305 6.305 26 O -0.265 6.265 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.234 0.766 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.750 13.360 -1.218 20.689 hybrid contribution 0.972 -0.488 -0.541 1.215 sum -14.778 12.872 -1.760 19.677 Atomic orbital electron populations 1.21906 0.91578 1.03883 1.03445 1.23673 0.96441 0.95417 0.82051 0.88306 1.23367 0.96404 1.01278 0.98631 1.21923 1.01359 0.84797 0.91829 0.85166 1.44900 1.08706 1.10052 1.75704 1.15489 0.83234 0.81056 0.78466 1.90923 1.33541 1.64896 1.56511 1.47958 1.10764 1.07476 1.70158 1.22318 0.88687 0.92456 0.98732 1.22759 0.97833 0.96679 0.98027 1.19515 0.90567 0.84668 0.84541 1.86104 1.39892 1.68755 1.44606 1.21511 0.93347 1.44297 0.98468 0.91478 1.25090 0.98502 0.94095 0.95646 1.69711 1.18104 1.47291 1.17919 0.86350 0.80749 0.78655 0.81146 1.19615 1.20777 1.20754 1.22919 0.83426 0.91947 1.01633 1.23707 0.79469 0.75004 0.91904 1.90774 1.38776 1.43957 1.57029 1.87081 1.35591 1.63364 1.40459 0.91142 0.91066 0.89893 0.87418 0.88382 0.76581 0.91889 0.92624 0.90412 0.90563 0.76707 0.92003 0.91603 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.57 37.15 0.36 -0.33 16 2 C 0.08 0.53 4.18 -25.91 -0.11 0.43 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.16 -1.02 6.45 -25.12 -0.16 -1.19 16 5 C 0.11 1.35 3.33 -67.99 -0.23 1.12 16 6 H 0.13 1.72 7.56 -51.93 -0.39 1.33 16 7 N -0.73 -10.67 5.08 -58.73 -0.30 -10.97 16 8 C 0.72 14.61 8.49 -86.92 -0.74 13.87 16 9 O -0.58 -14.33 16.32 5.29 0.09 -14.24 16 10 N -0.63 -13.02 3.32 -176.09 -0.59 -13.61 16 11 C 0.10 1.73 6.58 -2.41 -0.02 1.71 16 12 C -0.11 -2.23 6.24 -24.46 -0.15 -2.38 16 13 C 0.25 5.96 0.85 -89.93 -0.08 5.89 16 14 O -0.58 -14.74 13.08 -35.23 -0.46 -15.20 16 15 C -0.54 -14.00 8.12 -34.44 -0.28 -14.28 16 16 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 18 N -0.89 -24.04 10.98 55.43 0.61 -23.43 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.12 3.02 5.24 -3.06 -0.02 3.00 16 24 C 0.46 7.04 8.21 36.32 0.30 7.34 16 25 O -0.43 -8.72 18.00 -18.41 -0.33 -9.05 16 26 O -0.35 -4.19 10.76 -38.46 -0.41 -4.60 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.51 7.50 -51.93 -0.39 0.12 16 32 H 0.40 4.58 6.82 -40.82 -0.28 4.30 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.72 7.29 -51.93 -0.38 0.34 16 35 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.38 9.94 7.47 45.56 0.34 10.28 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.07 1.76 7.81 -51.93 -0.41 1.35 16 40 H 0.06 1.76 7.92 -51.93 -0.41 1.35 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -34.55 334.41 -7.43 -41.98 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.84 Total: 11.69 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: -1.21 Total: 16.93 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.28 Total: -48.02 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.12 Total: -43.10 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.55 -7.43 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683795670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.909 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds