Wall clock time and date at job start Fri Apr 10 2020 17:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.49005 * 2 1 4 4 C 1.54575 * 110.44008 * 237.51511 * 2 1 3 5 5 C 1.54492 * 102.14914 * 214.40794 * 4 2 1 6 6 H 1.09001 * 110.37031 * 256.40082 * 5 4 2 7 7 N 1.46499 * 110.36998 * 134.17961 * 5 4 2 8 8 C 1.34777 * 119.99665 * 155.27995 * 7 5 4 9 9 O 1.21583 * 120.00270 * 359.72083 * 8 7 5 10 10 N 1.34775 * 119.99585 * 179.72218 * 8 7 5 11 11 C 1.47429 * 125.64913 * 359.69312 * 10 8 7 12 12 C 1.55131 * 104.72085 * 155.81340 * 11 10 8 13 13 C 1.55160 * 101.48645 * 37.29437 * 12 11 10 14 14 O 1.42903 * 110.72108 * 82.69514 * 13 12 11 15 15 C 1.50700 * 110.72135 * 205.96527 * 13 12 11 16 16 H 1.07998 * 120.00049 * 354.98116 * 15 13 12 17 17 C 1.37882 * 119.99860 * 174.97385 * 15 13 12 18 18 N 1.31513 * 120.00101 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99554 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47438 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47046 * 120.00238 * 19 17 15 22 22 H 1.48494 * 109.47150 * 240.00146 * 19 17 15 23 23 C 1.47023 * 125.64494 * 179.97438 * 10 8 7 24 24 C 1.51336 * 104.82130 * 15.34360 * 5 4 2 25 25 O 1.20822 * 125.09421 * 182.29496 * 24 5 4 26 26 O 1.34057 * 109.80972 * 2.31320 * 24 5 4 27 27 H 1.09004 * 109.46953 * 182.48699 * 1 2 3 28 28 H 1.08996 * 109.47084 * 302.48459 * 1 2 3 29 29 H 1.09000 * 109.47743 * 62.48734 * 1 2 3 30 30 H 1.08999 * 110.86814 * 96.24216 * 4 2 1 31 31 H 1.09004 * 111.04764 * 332.65088 * 4 2 1 32 32 H 0.97001 * 119.99790 * 334.99708 * 7 5 4 33 33 H 1.08997 * 110.36623 * 274.74342 * 11 10 8 34 34 H 1.08995 * 110.36692 * 37.07015 * 11 10 8 35 35 H 1.08995 * 111.19675 * 279.19420 * 12 11 10 36 36 H 1.09002 * 110.93695 * 155.28387 * 12 11 10 37 37 H 0.96695 * 113.99885 * 185.02565 * 14 13 12 38 38 H 0.96994 * 119.99661 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.88380 * 300.43914 * 23 10 8 40 40 H 1.08994 * 109.88427 * 61.60742 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0698 -0.7779 -1.2218 5 6 3.3509 -1.4277 -0.6534 6 1 4.2344 -0.8928 -1.0018 7 7 3.4233 -2.8381 -1.0429 8 6 4.6177 -3.4593 -1.1061 9 8 5.6356 -2.8478 -0.8448 10 7 4.6838 -4.7583 -1.4591 11 6 3.5334 -5.6172 -1.7942 12 6 4.1247 -6.7354 -2.6924 13 6 5.5048 -6.9714 -2.0237 14 8 5.3798 -7.8474 -0.9016 15 6 6.4940 -7.5176 -3.0208 16 1 6.1713 -7.7658 -4.0211 17 6 7.8110 -7.7004 -2.6560 18 7 8.2039 -7.3984 -1.4378 19 14 9.0373 -8.3768 -3.8922 20 1 8.3487 -8.6339 -5.1826 21 1 10.1260 -7.3887 -4.1010 22 1 9.6121 -9.6450 -3.3761 23 6 5.9147 -5.5550 -1.5681 24 6 3.2148 -1.3025 0.8487 25 8 4.0416 -1.6614 1.6534 26 8 2.0394 -0.7340 1.1525 27 1 -0.3633 -1.0267 0.0446 28 1 -0.3633 0.5519 0.8668 29 1 -0.3634 0.4747 -0.9114 30 1 2.3091 -0.0985 -2.0398 31 1 1.3598 -1.5387 -1.5464 32 1 2.6112 -3.3260 -1.2514 33 1 3.1017 -6.0434 -0.8886 34 1 2.7823 -5.0485 -2.3423 35 1 4.2422 -6.3939 -3.7208 36 1 3.5108 -7.6350 -2.6493 37 1 6.1994 -7.9666 -0.4025 38 1 9.1304 -7.5274 -1.1811 39 1 6.5821 -5.1073 -2.3045 40 1 6.4100 -5.6064 -0.5986 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001683795670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:53 Heat of formation + Delta-G solvation = -178.593715 kcal Electronic energy + Delta-G solvation = -24979.613236 eV Core-core repulsion = 21179.686335 eV Total energy + Delta-G solvation = -3799.926901 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.38133 -41.09510 -39.15629 -38.82534 -36.15289 -36.08183 -34.24144 -33.52008 -31.92200 -30.51744 -29.47322 -27.00455 -25.67188 -24.38769 -23.10383 -22.24015 -21.43577 -21.07554 -19.39869 -19.01417 -18.38782 -17.99230 -17.85306 -17.15574 -16.72910 -16.48076 -16.20124 -15.57689 -15.27608 -14.89831 -14.82710 -14.72062 -14.67732 -13.97612 -13.75115 -13.53510 -13.45238 -13.28919 -13.03062 -12.90021 -12.86601 -12.54426 -12.35248 -12.24446 -12.13042 -12.06237 -11.91913 -11.57193 -11.36849 -11.17551 -10.67012 -10.33225 -10.29016 -9.49355 -8.26213 -6.42735 0.72590 1.40187 1.43332 1.54151 1.55798 1.95092 2.18070 2.37908 2.88451 2.96039 3.00619 3.18653 3.65964 3.78574 3.88032 4.02649 4.14085 4.21148 4.24833 4.36740 4.56638 4.70544 4.71834 4.81278 4.91414 5.01762 5.03848 5.12028 5.19067 5.23713 5.33102 5.35490 5.48385 5.71154 5.74145 5.96598 6.09264 6.31222 6.65024 6.93621 7.25816 7.33996 7.44132 8.79995 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.003503 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.126611 B = 7990.300795 C = 8222.161429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.121 0.879 4 C -0.137 4.137 5 C 0.105 3.895 6 H 0.119 0.881 7 N -0.710 5.710 8 C 0.710 3.290 9 O -0.633 6.633 10 N -0.633 5.633 11 C 0.104 3.896 12 C -0.108 4.108 13 C 0.231 3.769 14 O -0.588 6.588 15 C -0.554 4.554 16 H 0.071 0.929 17 C 0.022 3.978 18 N -0.918 5.918 19 Si 0.965 3.035 20 H -0.261 1.261 21 H -0.285 1.285 22 H -0.279 1.279 23 C 0.142 3.858 24 C 0.464 3.536 25 O -0.497 6.497 26 O -0.358 6.358 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.418 0.582 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.374 0.626 38 H 0.269 0.731 39 H 0.033 0.967 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.717 14.017 -4.314 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.139 0.861 4 C -0.175 4.175 5 C -0.004 4.004 6 H 0.136 0.864 7 N -0.371 5.371 8 C 0.412 3.588 9 O -0.514 6.514 10 N -0.369 5.369 11 C -0.017 4.017 12 C -0.146 4.146 13 C 0.191 3.809 14 O -0.395 6.395 15 C -0.592 4.592 16 H 0.089 0.911 17 C -0.179 4.179 18 N -0.557 5.557 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.205 1.205 23 C 0.018 3.982 24 C 0.303 3.697 25 O -0.381 6.381 26 O -0.275 6.275 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.257 0.743 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.223 0.777 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -19.211 14.329 -3.627 24.239 hybrid contribution 1.917 -0.690 0.222 2.050 sum -17.294 13.639 -3.405 22.286 Atomic orbital electron populations 1.21971 0.89389 1.04112 1.04986 1.24243 0.98037 0.95840 0.80229 0.86128 1.23486 0.93141 1.01844 0.99009 1.22209 1.04342 0.83526 0.90278 0.86362 1.44646 1.07300 1.10981 1.74131 1.15765 0.84273 0.80794 0.78002 1.90886 1.35982 1.66069 1.58493 1.47892 1.10618 1.07923 1.70497 1.22522 0.88133 0.91905 0.99147 1.22759 0.95002 0.98268 0.98530 1.19772 0.93473 0.83604 0.84100 1.86094 1.39323 1.69122 1.45009 1.21871 0.94116 1.44202 0.99048 0.91069 1.25878 1.00346 0.94439 0.97189 1.69839 1.18228 1.48152 1.19491 0.85393 0.78399 0.77754 0.79406 1.18463 1.21142 1.20490 1.22383 0.84594 0.93165 0.98090 1.24195 0.79328 0.73600 0.92613 1.90734 1.41439 1.47015 1.58960 1.87068 1.33906 1.63070 1.43451 0.91414 0.91328 0.86706 0.83899 0.85948 0.74317 0.91514 0.87046 0.89260 0.89022 0.77706 0.92215 0.94879 0.96074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.57 71.98 0.69 0.00 16 2 C 0.07 0.68 4.18 31.13 0.13 0.81 16 3 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.14 -1.14 6.45 31.64 0.20 -0.93 16 5 C 0.10 2.40 3.33 44.96 0.15 2.55 16 6 H 0.12 3.07 7.56 -2.39 -0.02 3.05 16 7 N -0.71 -19.32 5.08 -458.00 -2.33 -21.65 16 8 C 0.71 29.13 8.49 179.05 1.52 30.65 16 9 O -0.63 -32.61 16.32 -3.98 -0.06 -32.67 16 10 N -0.63 -26.26 3.32 -829.31 -2.76 -29.01 16 11 C 0.10 3.27 6.58 86.93 0.57 3.84 16 12 C -0.11 -3.94 6.24 32.07 0.20 -3.74 16 13 C 0.23 11.23 0.85 -10.35 -0.01 11.22 16 14 O -0.59 -30.25 13.08 -148.98 -1.95 -32.19 16 15 C -0.55 -29.07 8.12 25.60 0.21 -28.87 16 16 H 0.07 3.59 7.78 -2.91 -0.02 3.56 16 17 C 0.02 1.18 5.28 84.66 0.45 1.63 16 18 N -0.92 -51.49 10.98 21.45 0.24 -51.25 16 19 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.14 7.27 5.24 86.73 0.45 7.72 16 24 C 0.46 14.11 8.21 71.44 0.59 14.70 16 25 O -0.50 -21.46 18.00 21.65 0.39 -21.08 16 26 O -0.36 -8.14 10.76 -50.09 -0.54 -8.68 16 27 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.12 0.50 7.50 -2.39 -0.02 0.49 16 32 H 0.42 7.97 6.82 -92.71 -0.63 7.34 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.11 2.28 7.29 -2.39 -0.02 2.26 16 35 H 0.09 3.05 8.04 -2.39 -0.02 3.03 16 36 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.37 20.35 7.47 -74.06 -0.55 19.80 16 38 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.03 1.86 7.81 -2.38 -0.02 1.85 16 40 H 0.02 1.23 7.92 -2.39 -0.02 1.21 16 Total: -1.00 -83.02 334.41 0.06 -82.96 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.10 Total: 29.46 kcal Atomic # 6 Polarization: 34.44 SS G_CDS: 5.15 Total: 39.59 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -4.85 Total: -101.91 kcal Atomic # 8 Polarization: -92.46 SS G_CDS: -2.16 Total: -94.62 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -83.02 0.06 -82.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683795670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.629 kcal (2) G-P(sol) polarization free energy of solvation -83.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds