Wall clock time and date at job start Fri Apr 10 2020 17:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.19517 * 2 1 4 4 C 1.54483 * 110.29178 * 238.09138 * 2 1 3 5 5 C 1.54855 * 101.54627 * 215.39230 * 4 2 1 6 6 H 1.08994 * 110.68129 * 266.21695 * 5 4 2 7 7 N 1.46497 * 110.46658 * 143.38722 * 5 4 2 8 8 C 1.34777 * 119.99820 * 159.17043 * 7 5 4 9 9 O 1.21594 * 120.00061 * 359.97438 * 8 7 5 10 10 N 1.34771 * 120.00436 * 180.02562 * 8 7 5 11 11 C 1.47433 * 125.64398 * 0.02609 * 10 8 7 12 12 C 1.54920 * 104.82907 * 204.08982 * 11 10 8 13 13 C 1.55154 * 101.58097 * 322.99140 * 12 11 10 14 14 O 1.42900 * 110.72169 * 276.95974 * 13 12 11 15 15 C 1.50697 * 110.71980 * 153.86631 * 13 12 11 16 16 H 1.08006 * 119.99612 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00532 * 179.97438 * 15 13 12 18 18 N 1.31525 * 119.99454 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00644 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46944 * 59.99563 * 19 17 15 21 21 H 1.48494 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46627 * 300.00230 * 19 17 15 23 23 C 1.47017 * 125.65239 * 179.71466 * 10 8 7 24 24 C 1.51325 * 103.84954 * 24.85649 * 5 4 2 25 25 O 1.20833 * 124.94873 * 163.82197 * 24 5 4 26 26 O 1.33830 * 110.10190 * 343.55087 * 24 5 4 27 27 H 1.09000 * 109.47009 * 299.58226 * 1 2 3 28 28 H 1.09000 * 109.47088 * 59.58180 * 1 2 3 29 29 H 1.08995 * 109.46800 * 179.58289 * 1 2 3 30 30 H 1.09010 * 110.99482 * 333.70262 * 4 2 1 31 31 H 1.09000 * 110.99916 * 97.48658 * 4 2 1 32 32 H 0.96998 * 120.00730 * 339.17433 * 7 5 4 33 33 H 1.08995 * 110.36715 * 322.92696 * 11 10 8 34 34 H 1.08997 * 110.36338 * 85.14891 * 11 10 8 35 35 H 1.09001 * 111.00082 * 81.06622 * 12 11 10 36 36 H 1.08996 * 111.00025 * 204.87818 * 12 11 10 37 37 H 0.96701 * 114.00195 * 180.02562 * 14 13 12 38 38 H 0.97004 * 119.99368 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.88399 * 298.39793 * 23 10 8 40 40 H 1.09004 * 109.88497 * 59.56517 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9063 1.0230 0.0000 4 6 2.0658 -0.7659 -1.2300 5 6 3.3334 -1.4388 -0.6482 6 1 4.2137 -0.8219 -0.8284 7 7 3.5137 -2.7744 -1.2225 8 6 4.7269 -3.3608 -1.1964 9 8 5.6718 -2.7812 -0.6967 10 7 4.8931 -4.5893 -1.7251 11 6 3.8391 -5.4009 -2.3608 12 6 4.3307 -6.8639 -2.2278 13 6 5.8593 -6.6990 -2.4365 14 8 6.1780 -6.6580 -3.8289 15 6 6.6138 -7.8092 -1.7514 16 1 6.0760 -8.5737 -1.2102 17 6 7.9905 -7.8490 -1.8154 18 7 8.6453 -6.9183 -2.4749 19 14 8.9258 -9.2247 -0.9656 20 1 8.5025 -10.5321 -1.5283 21 1 10.3830 -9.0409 -1.1838 22 1 8.6350 -9.1950 0.4904 23 6 6.1567 -5.3395 -1.7693 24 6 3.0454 -1.5329 0.8344 25 8 3.6459 -2.2353 1.6129 26 8 2.0326 -0.7204 1.1588 27 1 -0.3633 0.5073 0.8937 28 1 -0.3633 0.5203 -0.8862 29 1 -0.3633 -1.0276 -0.0075 30 1 1.3454 -1.5095 -1.5713 31 1 2.3256 -0.0787 -2.0353 32 1 2.7601 -3.2366 -1.6215 33 1 2.8920 -5.2699 -1.8375 34 1 3.7324 -5.1288 -3.4109 35 1 4.1123 -7.2609 -1.2364 36 1 3.8957 -7.4942 -3.0034 37 1 7.1218 -6.5563 -4.0136 38 1 9.6138 -6.9465 -2.5202 39 1 6.8937 -4.7901 -2.3552 40 1 6.5288 -5.4989 -0.7572 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001683795671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:57 Heat of formation + Delta-G solvation = -152.015544 kcal Electronic energy + Delta-G solvation = -24975.636030 eV Core-core repulsion = 21176.861645 eV Total energy + Delta-G solvation = -3798.774385 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34574 -39.53305 -37.65118 -37.37837 -34.89056 -34.29799 -32.73032 -32.14694 -30.49600 -29.35051 -27.75851 -25.38838 -24.63250 -22.80564 -22.49876 -21.02577 -19.70966 -19.52686 -18.02685 -17.49532 -17.10498 -16.86647 -16.42629 -15.36328 -15.25313 -14.83602 -14.54008 -14.36266 -14.17443 -13.93564 -13.38807 -13.24350 -13.03113 -12.88307 -12.76757 -12.46650 -12.17526 -12.13095 -11.67099 -11.47519 -11.45513 -11.02500 -10.82183 -10.78658 -10.66198 -10.63211 -10.50573 -10.15416 -9.69724 -9.33937 -8.96108 -8.64918 -8.32115 -7.81579 -6.27716 -4.36039 2.05061 2.74692 3.05980 3.25368 3.30357 3.32742 3.48998 3.82685 3.97058 4.12083 4.28461 4.37072 4.40441 4.68668 4.88964 4.99800 5.11020 5.27627 5.29622 5.35261 5.44654 5.63901 5.67016 5.78482 5.98602 6.06809 6.38741 6.49256 6.67017 6.70593 6.87828 6.95035 7.21013 7.32228 7.49119 7.54561 7.75343 8.02150 8.43191 8.66652 9.03075 9.32389 9.44096 10.80202 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.029342 B = 0.003545 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.037125 B = 7897.418041 C = 8244.331700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.081 3.919 3 H 0.103 0.897 4 C -0.158 4.158 5 C 0.110 3.890 6 H 0.132 0.868 7 N -0.734 5.734 8 C 0.718 3.282 9 O -0.584 6.584 10 N -0.626 5.626 11 C 0.102 3.898 12 C -0.116 4.116 13 C 0.250 3.750 14 O -0.587 6.587 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.120 3.880 24 C 0.462 3.538 25 O -0.428 6.428 26 O -0.346 6.346 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.398 0.602 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.386 0.614 38 H 0.272 0.728 39 H 0.062 0.938 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 12.851 -1.210 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.121 0.879 4 C -0.196 4.196 5 C 0.001 3.999 6 H 0.150 0.850 7 N -0.393 5.393 8 C 0.420 3.580 9 O -0.461 6.461 10 N -0.363 5.363 11 C -0.021 4.021 12 C -0.154 4.154 13 C 0.209 3.791 14 O -0.397 6.397 15 C -0.576 4.576 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.002 4.002 24 C 0.298 3.702 25 O -0.308 6.308 26 O -0.262 6.262 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.234 0.766 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.238 0.762 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.061 13.010 -0.328 20.672 hybrid contribution 0.855 -0.747 0.244 1.161 sum -15.206 12.263 -0.084 19.535 Atomic orbital electron populations 1.22003 0.92041 1.03728 1.03516 1.23562 0.96124 0.95914 0.81902 0.87908 1.23407 0.96368 1.01239 0.98588 1.21996 1.00746 0.86609 0.90509 0.85045 1.44822 1.11216 1.17617 1.65654 1.15449 0.82593 0.80732 0.79214 1.90914 1.39792 1.64121 1.51277 1.47910 1.13398 1.14798 1.60155 1.22263 0.90001 0.92938 0.96884 1.22734 0.97519 0.93408 1.01764 1.19469 0.89599 0.89960 0.80085 1.86062 1.32003 1.96376 1.25239 1.21485 0.91629 1.10502 1.34006 0.91521 1.25077 0.97668 0.96024 0.94488 1.69568 1.08949 1.33368 1.41637 0.86430 0.78445 0.81819 0.80053 1.19998 1.21049 1.19964 1.22951 0.82491 0.92912 1.01814 1.23666 0.77590 0.77525 0.91388 1.90790 1.46929 1.35396 1.57726 1.86811 1.48023 1.53858 1.37520 0.90997 0.89932 0.91360 0.88449 0.87240 0.76602 0.92739 0.91841 0.90514 0.90487 0.76154 0.91833 0.91922 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 9.54 37.16 0.35 -0.36 16 2 C 0.08 0.53 4.25 -25.95 -0.11 0.42 16 3 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.16 -1.00 6.39 -24.97 -0.16 -1.16 16 5 C 0.11 1.34 3.25 -67.80 -0.22 1.12 16 6 H 0.13 1.69 7.68 -51.93 -0.40 1.29 16 7 N -0.73 -10.68 5.12 -58.55 -0.30 -10.98 16 8 C 0.72 14.72 8.45 -86.92 -0.73 13.98 16 9 O -0.58 -14.39 16.39 5.28 0.09 -14.30 16 10 N -0.63 -13.09 3.33 -176.22 -0.59 -13.67 16 11 C 0.10 1.76 6.57 -2.52 -0.02 1.74 16 12 C -0.12 -2.30 6.23 -24.58 -0.15 -2.46 16 13 C 0.25 6.06 0.86 -89.93 -0.08 5.98 16 14 O -0.59 -14.74 13.08 -35.23 -0.46 -15.20 16 15 C -0.54 -14.20 8.11 -34.44 -0.28 -14.48 16 16 H 0.07 1.72 7.76 -52.48 -0.41 1.32 16 17 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 18 N -0.90 -24.06 10.97 55.43 0.61 -23.46 16 19 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.12 2.98 5.54 -3.06 -0.02 2.96 16 24 C 0.46 7.01 8.28 36.31 0.30 7.31 16 25 O -0.43 -8.80 17.96 -18.44 -0.33 -9.13 16 26 O -0.35 -4.13 10.63 -37.89 -0.40 -4.54 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.49 7.58 -51.92 -0.39 0.10 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.40 4.57 6.87 -40.82 -0.28 4.29 16 33 H 0.05 0.75 7.30 -51.93 -0.38 0.37 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.39 10.05 6.98 45.56 0.32 10.37 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.68 8.07 -51.93 -0.42 1.26 16 40 H 0.06 1.78 7.81 -51.93 -0.41 1.37 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -34.64 334.44 -7.45 -42.09 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.88 Total: 11.59 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: -1.21 Total: 16.83 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.28 Total: -48.11 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.11 Total: -43.17 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.64 -7.45 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683795671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.930 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds