Wall clock time and date at job start Fri Apr 10 2020 17:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.19517 * 2 1 4 4 C 1.54483 * 110.29178 * 238.09138 * 2 1 3 5 5 C 1.54855 * 101.54627 * 215.39230 * 4 2 1 6 6 H 1.08994 * 110.68129 * 266.21695 * 5 4 2 7 7 N 1.46497 * 110.46658 * 143.38722 * 5 4 2 8 8 C 1.34777 * 119.99820 * 159.17043 * 7 5 4 9 9 O 1.21594 * 120.00061 * 359.97438 * 8 7 5 10 10 N 1.34771 * 120.00436 * 180.02562 * 8 7 5 11 11 C 1.47433 * 125.64398 * 0.02609 * 10 8 7 12 12 C 1.54920 * 104.82907 * 204.08982 * 11 10 8 13 13 C 1.55154 * 101.58097 * 322.99140 * 12 11 10 14 14 O 1.42900 * 110.72169 * 276.95974 * 13 12 11 15 15 C 1.50697 * 110.71980 * 153.86631 * 13 12 11 16 16 H 1.08006 * 119.99612 * 359.97438 * 15 13 12 17 17 C 1.37877 * 120.00532 * 179.97438 * 15 13 12 18 18 N 1.31525 * 119.99454 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00644 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46944 * 59.99563 * 19 17 15 21 21 H 1.48494 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46627 * 300.00230 * 19 17 15 23 23 C 1.47017 * 125.65239 * 179.71466 * 10 8 7 24 24 C 1.51325 * 103.84954 * 24.85649 * 5 4 2 25 25 O 1.20833 * 124.94873 * 163.82197 * 24 5 4 26 26 O 1.33830 * 110.10190 * 343.55087 * 24 5 4 27 27 H 1.09000 * 109.47009 * 299.58226 * 1 2 3 28 28 H 1.09000 * 109.47088 * 59.58180 * 1 2 3 29 29 H 1.08995 * 109.46800 * 179.58289 * 1 2 3 30 30 H 1.09010 * 110.99482 * 333.70262 * 4 2 1 31 31 H 1.09000 * 110.99916 * 97.48658 * 4 2 1 32 32 H 0.96998 * 120.00730 * 339.17433 * 7 5 4 33 33 H 1.08995 * 110.36715 * 322.92696 * 11 10 8 34 34 H 1.08997 * 110.36338 * 85.14891 * 11 10 8 35 35 H 1.09001 * 111.00082 * 81.06622 * 12 11 10 36 36 H 1.08996 * 111.00025 * 204.87818 * 12 11 10 37 37 H 0.96701 * 114.00195 * 180.02562 * 14 13 12 38 38 H 0.97004 * 119.99368 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.88399 * 298.39793 * 23 10 8 40 40 H 1.09004 * 109.88497 * 59.56517 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9063 1.0230 0.0000 4 6 2.0658 -0.7659 -1.2300 5 6 3.3334 -1.4388 -0.6482 6 1 4.2137 -0.8219 -0.8284 7 7 3.5137 -2.7744 -1.2225 8 6 4.7269 -3.3608 -1.1964 9 8 5.6718 -2.7812 -0.6967 10 7 4.8931 -4.5893 -1.7251 11 6 3.8391 -5.4009 -2.3608 12 6 4.3307 -6.8639 -2.2278 13 6 5.8593 -6.6990 -2.4365 14 8 6.1780 -6.6580 -3.8289 15 6 6.6138 -7.8092 -1.7514 16 1 6.0760 -8.5737 -1.2102 17 6 7.9905 -7.8490 -1.8154 18 7 8.6453 -6.9183 -2.4749 19 14 8.9258 -9.2247 -0.9656 20 1 8.5025 -10.5321 -1.5283 21 1 10.3830 -9.0409 -1.1838 22 1 8.6350 -9.1950 0.4904 23 6 6.1567 -5.3395 -1.7693 24 6 3.0454 -1.5329 0.8344 25 8 3.6459 -2.2353 1.6129 26 8 2.0326 -0.7204 1.1588 27 1 -0.3633 0.5073 0.8937 28 1 -0.3633 0.5203 -0.8862 29 1 -0.3633 -1.0276 -0.0075 30 1 1.3454 -1.5095 -1.5713 31 1 2.3256 -0.0787 -2.0353 32 1 2.7601 -3.2366 -1.6215 33 1 2.8920 -5.2699 -1.8375 34 1 3.7324 -5.1288 -3.4109 35 1 4.1123 -7.2609 -1.2364 36 1 3.8957 -7.4942 -3.0034 37 1 7.1218 -6.5563 -4.0136 38 1 9.6138 -6.9465 -2.5202 39 1 6.8937 -4.7901 -2.3552 40 1 6.5288 -5.4989 -0.7572 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001683795671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:56 Heat of formation + Delta-G solvation = -179.645955 kcal Electronic energy + Delta-G solvation = -24976.834175 eV Core-core repulsion = 21176.861645 eV Total energy + Delta-G solvation = -3799.972529 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.36911 -41.08736 -39.15700 -38.77774 -36.16183 -36.10898 -34.17555 -33.51585 -31.92730 -30.52518 -29.50613 -27.00838 -25.69524 -24.39206 -23.24314 -22.14841 -21.41840 -20.98900 -19.41908 -19.02834 -18.49877 -18.03060 -17.67076 -17.10779 -16.77098 -16.39347 -16.19643 -15.50786 -15.34810 -14.91646 -14.77729 -14.76767 -14.70211 -14.00282 -13.80900 -13.55565 -13.47235 -13.33329 -12.98256 -12.88649 -12.84546 -12.54571 -12.34154 -12.31433 -12.11736 -12.06748 -11.88617 -11.53603 -11.36275 -11.21023 -10.64985 -10.31844 -10.29696 -9.48457 -8.28654 -6.44158 0.86797 1.40730 1.42666 1.50049 1.55984 1.94929 2.12726 2.36588 2.89509 2.91321 2.97986 3.18128 3.64494 3.78626 3.85219 4.04860 4.13393 4.21254 4.25885 4.36858 4.57053 4.68253 4.72476 4.78924 4.89135 5.01458 5.02581 5.11622 5.18491 5.22882 5.33154 5.35298 5.46658 5.74364 5.77334 5.96276 6.07686 6.37399 6.61766 6.94859 7.27768 7.37616 7.45860 8.77485 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.029342 B = 0.003545 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.037125 B = 7897.418041 C = 8244.331700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.071 3.929 3 H 0.128 0.872 4 C -0.136 4.136 5 C 0.104 3.896 6 H 0.123 0.877 7 N -0.710 5.710 8 C 0.712 3.288 9 O -0.635 6.635 10 N -0.633 5.633 11 C 0.107 3.893 12 C -0.112 4.112 13 C 0.236 3.764 14 O -0.586 6.586 15 C -0.560 4.560 16 H 0.067 0.933 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.964 3.036 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.277 1.277 23 C 0.138 3.862 24 C 0.462 3.538 25 O -0.500 6.500 26 O -0.356 6.356 27 H 0.068 0.932 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.417 0.583 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.379 0.621 38 H 0.272 0.728 39 H 0.029 0.971 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.712 13.648 -2.515 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 H 0.146 0.854 4 C -0.174 4.174 5 C -0.004 4.004 6 H 0.141 0.859 7 N -0.370 5.370 8 C 0.414 3.586 9 O -0.516 6.516 10 N -0.369 5.369 11 C -0.015 4.015 12 C -0.150 4.150 13 C 0.195 3.805 14 O -0.395 6.395 15 C -0.599 4.599 16 H 0.085 0.915 17 C -0.176 4.176 18 N -0.556 5.556 19 Si 0.789 3.211 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.202 1.202 23 C 0.014 3.986 24 C 0.301 3.699 25 O -0.385 6.385 26 O -0.272 6.272 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.163 0.837 32 H 0.257 0.743 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.346 13.838 -1.675 23.845 hybrid contribution 1.760 -0.875 0.662 2.074 sum -17.586 12.963 -1.013 21.871 Atomic orbital electron populations 1.22060 0.90052 1.03939 1.04927 1.24136 0.97594 0.96481 0.80095 0.85389 1.23537 0.93191 1.01690 0.98947 1.22300 1.03549 0.85443 0.89091 0.85933 1.44567 1.09552 1.18344 1.64550 1.15727 0.83791 0.80459 0.78625 1.90873 1.42114 1.65378 1.53245 1.47846 1.12990 1.15320 1.60744 1.22463 0.90367 0.90332 0.98315 1.22727 0.94029 0.95745 1.02487 1.19654 0.92650 0.88858 0.79325 1.86047 1.31330 1.96342 1.25814 1.21854 0.92343 1.11234 1.34422 0.91491 1.25828 0.98598 0.98059 0.95098 1.69671 1.09001 1.34543 1.42407 0.85516 0.77237 0.79594 0.78763 1.18943 1.20776 1.20205 1.22420 0.83790 0.93657 0.98699 1.24141 0.77131 0.76506 0.92075 1.90747 1.49551 1.38598 1.59608 1.86794 1.46667 1.53197 1.40553 0.91339 0.86730 0.91793 0.86159 0.83677 0.74349 0.88173 0.90063 0.90346 0.88684 0.77064 0.91905 0.95248 0.95788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.54 71.98 0.69 -0.07 16 2 C 0.07 0.67 4.25 31.10 0.13 0.80 16 3 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 4 C -0.14 -1.09 6.39 31.73 0.20 -0.89 16 5 C 0.10 2.36 3.25 45.08 0.15 2.51 16 6 H 0.12 3.07 7.68 -2.39 -0.02 3.05 16 7 N -0.71 -19.37 5.12 -457.41 -2.34 -21.72 16 8 C 0.71 29.34 8.45 179.06 1.51 30.86 16 9 O -0.63 -32.67 16.39 -4.01 -0.07 -32.73 16 10 N -0.63 -26.44 3.33 -829.71 -2.76 -29.20 16 11 C 0.11 3.38 6.57 86.86 0.57 3.95 16 12 C -0.11 -4.26 6.23 31.99 0.20 -4.06 16 13 C 0.24 11.59 0.86 -10.35 -0.01 11.58 16 14 O -0.59 -29.73 13.08 -148.98 -1.95 -31.68 16 15 C -0.56 -30.09 8.11 25.60 0.21 -29.88 16 16 H 0.07 3.49 7.76 -2.91 -0.02 3.47 16 17 C 0.02 1.33 5.28 84.65 0.45 1.78 16 18 N -0.92 -50.85 10.97 21.45 0.24 -50.61 16 19 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 C 0.14 7.14 5.54 86.73 0.48 7.62 16 24 C 0.46 13.96 8.28 71.43 0.59 14.55 16 25 O -0.50 -21.47 17.96 21.64 0.39 -21.08 16 26 O -0.36 -8.03 10.63 -47.95 -0.51 -8.54 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.12 0.50 7.58 -2.38 -0.02 0.48 16 31 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.42 8.01 6.87 -92.71 -0.64 7.37 16 33 H 0.10 2.29 7.30 -2.39 -0.02 2.27 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.08 2.93 8.02 -2.39 -0.02 2.91 16 36 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.38 20.30 6.98 -74.06 -0.52 19.78 16 38 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 40 H 0.02 1.39 7.81 -2.38 -0.02 1.37 16 Total: -1.00 -82.71 334.44 0.12 -82.59 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.07 Total: 29.05 kcal Atomic # 6 Polarization: 33.59 SS G_CDS: 5.17 Total: 38.75 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.87 Total: -101.53 kcal Atomic # 8 Polarization: -91.90 SS G_CDS: -2.14 Total: -94.03 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -82.71 0.12 -82.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683795671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.058 kcal (2) G-P(sol) polarization free energy of solvation -82.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds