Wall clock time and date at job start Fri Apr 10 2020 17:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47349 * 109.99317 * 3 2 1 5 5 C 1.47020 * 110.99867 * 52.17390 * 4 3 2 6 6 C 1.53097 * 109.25821 * 182.39476 * 5 4 3 7 7 O 1.43018 * 109.25761 * 303.14898 * 6 5 4 8 8 C 1.43021 * 113.73315 * 58.67535 * 7 6 5 9 9 C 1.47015 * 111.00353 * 175.81223 * 4 3 2 10 10 H 1.08994 * 109.54344 * 297.56332 * 9 4 3 11 11 C 1.53001 * 109.50610 * 57.67625 * 9 4 3 12 12 N 1.46493 * 109.47167 * 54.18305 * 11 9 4 13 13 C 1.34782 * 120.00018 * 184.95528 * 12 11 9 14 14 O 1.21282 * 119.99586 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00084 * 180.02562 * 13 12 11 16 16 S 1.80993 * 109.47059 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00282 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99431 * 359.97438 * 17 16 15 19 19 C 1.38790 * 120.00251 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00101 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00014 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46784 * 59.99926 * 21 19 17 23 23 H 1.48500 * 109.46821 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46999 * 299.99759 * 21 19 17 25 25 H 4.40882 * 5.52130 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47447 * 349.99429 * 3 2 1 27 27 H 1.08998 * 109.47813 * 229.99531 * 3 2 1 28 28 H 1.08996 * 109.50489 * 302.33459 * 5 4 3 29 29 H 1.09003 * 109.49886 * 62.46165 * 5 4 3 30 30 H 1.09002 * 109.50374 * 183.22138 * 6 5 4 31 31 H 1.08992 * 109.50953 * 63.08741 * 6 5 4 32 32 H 1.09001 * 109.50735 * 61.26549 * 8 7 6 33 33 H 1.09006 * 109.50473 * 181.38984 * 8 7 6 34 34 H 1.08997 * 109.46966 * 174.18835 * 11 9 4 35 35 H 1.08997 * 109.47053 * 294.18157 * 11 9 4 36 36 H 0.97003 * 120.00744 * 4.96023 * 12 11 9 37 37 H 1.09002 * 109.46644 * 299.99763 * 15 13 12 38 38 H 1.08999 * 109.47204 * 59.99416 * 15 13 12 39 39 H 0.97002 * 120.00652 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1354 0.4744 -1.3015 5 6 2.5169 1.7587 -1.6613 6 6 3.0081 2.1851 -3.0472 7 8 4.4366 2.2552 -3.0404 8 6 5.0718 1.0213 -2.6948 9 6 4.6016 0.5831 -1.3053 10 1 4.9144 1.3203 -0.5659 11 6 5.2155 -0.7760 -0.9632 12 7 4.6881 -1.7936 -1.8755 13 6 5.0127 -3.0898 -1.6994 14 8 5.7409 -3.4137 -0.7853 15 6 4.4706 -4.1366 -2.6383 16 16 5.0818 -5.7664 -2.1424 17 6 4.3154 -6.7681 -3.3729 18 1 3.6877 -6.3136 -4.1251 19 6 4.5184 -8.1411 -3.3754 20 7 5.2838 -8.6950 -2.4589 21 14 3.7052 -9.2031 -4.6794 22 1 4.1611 -8.7705 -6.0249 23 1 4.0775 -10.6243 -4.4632 24 1 2.2302 -9.0587 -4.5864 25 1 -1.0500 0.0001 0.0002 26 1 3.0098 -1.0112 0.1785 27 1 3.0091 0.6614 0.7871 28 1 1.4326 1.6486 -1.6773 29 1 2.7958 2.5151 -0.9276 30 1 2.5969 3.1640 -3.2938 31 1 2.6830 1.4556 -3.7889 32 1 4.8067 0.2579 -3.4263 33 1 6.1532 1.1584 -2.6866 34 1 6.2991 -0.7215 -1.0668 35 1 4.9615 -1.0414 0.0630 36 1 4.1054 -1.5346 -2.6065 37 1 3.3813 -4.1303 -2.5996 38 1 4.7993 -3.9185 -3.6544 39 1 5.4254 -9.6546 -2.4604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754963278.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:09 Heat of formation + Delta-G solvation = -14.267982 kcal Electronic energy + Delta-G solvation = -21658.101581 eV Core-core repulsion = 18308.053250 eV Total energy + Delta-G solvation = -3350.048331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47644 -38.85995 -36.73769 -34.86121 -32.92186 -32.40784 -31.68254 -29.51186 -28.86340 -26.36632 -25.41980 -24.97086 -22.95246 -20.82001 -19.98283 -18.50558 -17.88148 -17.00294 -16.67746 -16.41811 -15.89032 -15.52945 -15.30220 -14.90908 -14.78306 -14.74379 -14.43521 -13.93787 -13.51090 -13.45356 -13.06558 -13.00587 -12.54054 -12.39151 -11.90703 -11.67111 -11.58130 -11.04618 -11.02121 -11.01988 -10.75401 -10.66354 -10.46578 -9.99068 -9.80029 -9.38443 -9.04199 -8.84303 -8.81822 -8.21263 -6.47263 -6.19419 -3.89716 2.36935 2.60418 3.06723 3.13933 3.25151 3.29063 3.32846 3.46512 3.52349 3.80659 4.04036 4.22898 4.35746 4.43754 4.61136 4.74988 4.85491 4.91628 5.06880 5.15670 5.20138 5.26269 5.30773 5.37593 5.43133 5.50698 5.54556 5.61204 5.71022 5.79194 5.93955 6.19101 6.42950 6.46502 6.67525 6.76388 7.35924 7.61543 7.78800 8.37328 8.65958 9.25859 10.87979 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.003221 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.764674 B = 8689.850740 C = 8987.519722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.182 4.182 3 C 0.160 3.840 4 N -0.526 5.526 5 C 0.017 3.983 6 C 0.062 3.938 7 O -0.383 6.383 8 C 0.068 3.932 9 C 0.037 3.963 10 H 0.069 0.931 11 C 0.128 3.872 12 N -0.728 5.728 13 C 0.532 3.468 14 O -0.522 6.522 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.218 0.782 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.404 0.596 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 23.667 1.182 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.183 4.183 3 C 0.034 3.966 4 N -0.252 5.252 5 C -0.111 4.111 6 C -0.015 4.015 7 O -0.301 6.301 8 C -0.009 4.009 9 C -0.072 4.072 10 H 0.087 0.913 11 C 0.003 3.997 12 N -0.384 5.384 13 C 0.318 3.682 14 O -0.396 6.396 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 H 0.235 0.765 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.239 0.761 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.124 22.790 2.388 23.480 hybrid contribution -1.876 0.128 -1.454 2.377 sum -7.001 22.918 0.935 23.982 Atomic orbital electron populations 1.24919 0.95890 1.00926 0.99371 1.22693 0.94050 1.00487 1.01053 1.19129 0.85117 1.02440 0.89949 1.62238 1.05262 1.28306 1.29423 1.22853 1.00743 0.89805 0.97661 1.22696 0.81095 1.02139 0.95548 1.88011 1.18976 1.33167 1.89989 1.22749 0.97969 0.86571 0.93583 1.22682 0.87628 0.97410 0.99453 0.91340 1.21253 0.98327 0.85359 0.94805 1.45888 1.52844 1.06144 1.33528 1.20303 0.80209 0.82415 0.85299 1.90701 1.35884 1.80802 1.32241 1.23510 1.04246 1.01186 1.01321 1.85363 1.64879 0.91708 1.41446 1.22835 1.35163 0.94337 1.16053 0.91000 1.24977 0.95140 0.96976 0.96420 1.70006 1.35618 1.11821 1.32924 0.86236 0.79566 0.78768 0.81006 1.19931 1.20826 1.19954 0.76499 0.87430 0.92303 0.89142 0.93779 0.88364 0.91959 0.91727 0.87765 0.90678 0.90976 0.76090 0.89279 0.89317 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 19.20 29.55 0.57 -1.19 16 2 C -0.18 -1.89 11.74 -37.13 -0.44 -2.32 16 3 C 0.16 1.53 5.05 -6.62 -0.03 1.49 16 4 N -0.53 -4.73 4.10 -229.83 -0.94 -5.68 16 5 C 0.02 0.14 5.30 -3.71 -0.02 0.12 16 6 C 0.06 0.48 7.01 37.21 0.26 0.74 16 7 O -0.38 -3.64 10.83 -35.23 -0.38 -4.02 16 8 C 0.07 0.58 6.20 37.21 0.23 0.81 16 9 C 0.04 0.31 2.25 -67.60 -0.15 0.16 16 10 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 11 C 0.13 1.36 4.66 -4.05 -0.02 1.34 16 12 N -0.73 -9.45 5.11 -60.30 -0.31 -9.75 16 13 C 0.53 9.74 7.85 -10.98 -0.09 9.65 16 14 O -0.52 -11.60 15.86 5.56 0.09 -11.52 16 15 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.12 5.49 -17.44 -0.10 2.03 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.22 1.26 7.80 -54.09 -0.42 0.84 16 26 H 0.11 1.18 6.64 -51.93 -0.34 0.83 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.72 6.77 -51.93 -0.35 0.37 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 7.06 -51.93 -0.37 0.20 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.83 6.80 -51.93 -0.35 0.47 16 36 H 0.40 4.59 7.27 -40.82 -0.30 4.30 16 37 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -34.66 342.69 -7.63 -42.29 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.48 Total: 1.53 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 0.73 Total: -5.08 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.52 Total: -40.98 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.29 Total: -15.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.66 -7.63 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754963278.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.023 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds