Wall clock time and date at job start Fri Apr 10 2020 17:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47055 * 2 1 4 4 C 1.53004 * 109.46946 * 240.00348 * 2 1 3 5 5 C 1.52995 * 117.50049 * 128.62339 * 4 2 1 6 6 C 1.52996 * 117.50276 * 59.99632 * 4 2 1 7 7 N 1.46496 * 109.47068 * 119.99842 * 2 1 3 8 8 C 1.46505 * 119.99815 * 54.80735 * 7 2 1 9 9 C 1.50699 * 109.46654 * 278.37278 * 8 7 2 10 10 H 1.07999 * 120.00423 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99669 * 179.97438 * 9 8 7 12 12 N 1.31508 * 120.00088 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00106 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47321 * 89.99473 * 13 11 9 15 15 H 1.48495 * 109.47337 * 210.00090 * 13 11 9 16 16 H 1.48504 * 109.46802 * 329.99780 * 13 11 9 17 17 C 1.34769 * 119.99943 * 234.80306 * 7 2 1 18 18 O 1.21539 * 120.00556 * 6.46547 * 17 7 2 19 19 C 1.47918 * 120.00054 * 186.46614 * 17 7 2 20 20 C 1.39625 * 119.99964 * 150.65836 * 19 17 7 21 21 C 1.37725 * 120.00807 * 180.02562 * 20 19 17 22 22 C 1.39670 * 119.99468 * 359.97438 * 21 20 19 23 23 C 1.43198 * 120.00714 * 180.02562 * 22 21 20 24 24 N 9.03001 * 117.23918 * 115.82493 * 2 1 3 25 25 C 1.39682 * 119.98826 * 0.27590 * 22 21 20 26 26 C 1.37725 * 119.99060 * 359.44301 * 25 22 21 27 27 H 1.09001 * 109.46836 * 300.00335 * 1 2 3 28 28 H 1.09001 * 109.47381 * 59.99757 * 1 2 3 29 29 H 1.08993 * 109.47136 * 179.97438 * 1 2 3 30 30 H 1.08998 * 115.54581 * 274.32851 * 4 2 1 31 31 H 1.08999 * 117.49818 * 359.97438 * 5 4 2 32 32 H 1.08991 * 117.50053 * 145.01831 * 5 4 2 33 33 H 1.08993 * 117.50365 * 214.97901 * 6 4 2 34 34 H 1.09008 * 117.49373 * 0.02562 * 6 4 2 35 35 H 1.08998 * 109.47078 * 38.37609 * 8 7 2 36 36 H 1.09000 * 109.47035 * 158.37264 * 8 7 2 37 37 H 0.97002 * 120.00240 * 179.97438 * 12 11 9 38 38 H 1.08009 * 119.99249 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.99974 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00043 * 179.70302 * 25 22 21 41 41 H 1.08001 * 119.99780 * 180.27662 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1495 -2.6097 7 7 2.0183 -0.6906 1.1962 8 6 1.5731 -2.0557 1.4869 9 6 0.2214 -2.0122 2.1519 10 1 -0.2582 -1.0627 2.3388 11 6 -0.4035 -3.1846 2.5207 12 7 -1.5832 -3.1467 3.1005 13 14 0.4257 -4.8269 2.1967 14 1 1.2641 -5.1971 3.3651 15 1 -0.6091 -5.8696 1.9796 16 1 1.2813 -4.7193 0.9877 17 6 2.8772 -0.0701 2.0290 18 8 3.1555 1.1000 1.8538 19 6 3.4813 -0.8131 3.1564 20 6 4.7460 -0.4573 3.6292 21 6 5.3088 -1.1494 4.6785 22 6 4.6141 -2.2068 5.2702 23 6 5.1988 -2.9262 6.3616 24 7 5.6631 -3.4974 7.2268 25 6 3.3511 -2.5659 4.7937 26 6 2.7863 -1.8698 3.7481 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.1267 -1.8044 -1.1643 31 1 3.3909 0.9970 -1.7893 32 1 3.8415 -0.6000 -2.5942 33 1 1.4568 -0.8565 -3.4197 34 1 1.0066 0.7408 -2.6145 35 1 1.5028 -2.6206 0.5574 36 1 2.2898 -2.5378 2.1517 37 1 -2.0230 -3.9716 3.3597 38 1 5.2833 0.3601 3.1713 39 1 6.2872 -0.8744 5.0438 40 1 2.8159 -3.3866 5.2479 41 1 1.8079 -2.1445 3.3825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069580592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:15 Heat of formation + Delta-G solvation = 73.055105 kcal Electronic energy + Delta-G solvation = -24072.947891 eV Core-core repulsion = 20727.075317 eV Total energy + Delta-G solvation = -3345.872575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29694 -38.63117 -37.27348 -36.25641 -35.30026 -32.75643 -31.79118 -31.00358 -29.59682 -28.29279 -24.96163 -23.41918 -22.83773 -22.44468 -22.05900 -20.31452 -19.01002 -18.56293 -17.22163 -16.93968 -16.28805 -15.31766 -14.83141 -14.71747 -14.58264 -14.24907 -14.00207 -13.90167 -13.54960 -13.52497 -12.99863 -12.79532 -12.67035 -12.41447 -12.30385 -12.08766 -11.84788 -11.64047 -11.45025 -11.30083 -11.06903 -10.98461 -10.52627 -10.32148 -10.21761 -10.10582 -9.80843 -9.55751 -9.31765 -8.98623 -8.84171 -8.56786 -7.89619 -6.41030 -4.43778 0.63750 1.51106 2.67408 2.75917 3.03719 3.13685 3.16791 3.43486 3.54528 3.91412 4.05971 4.08462 4.09098 4.85183 4.91520 4.96494 5.00375 5.05451 5.14702 5.23200 5.49671 5.60829 5.62846 5.76194 5.82465 5.91577 5.96594 6.03103 6.13722 6.16018 6.25507 6.27873 6.32129 6.47388 6.48774 6.56856 6.65076 6.69572 7.00492 7.08560 7.15437 7.29661 7.47890 7.93342 8.23948 8.65433 8.73417 9.15197 10.69440 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.006387 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.290594 B = 4382.693240 C = 6035.609140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.174 3.826 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.182 4.182 6 C -0.173 4.173 7 N -0.572 5.572 8 C 0.175 3.825 9 C -0.544 4.544 10 H 0.090 0.910 11 C 0.083 3.917 12 N -0.875 5.875 13 Si 0.855 3.145 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.260 1.260 17 C 0.557 3.443 18 O -0.561 6.561 19 C -0.098 4.098 20 C -0.071 4.071 21 C -0.092 4.092 22 C -0.021 4.021 23 C 0.262 3.738 24 N -0.429 5.429 25 C -0.085 4.085 26 C -0.106 4.106 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.270 0.730 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.071 2.492 -5.635 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.071 3.929 3 H 0.108 0.892 4 C -0.176 4.176 5 C -0.219 4.219 6 C -0.211 4.211 7 N -0.301 5.301 8 C 0.054 3.946 9 C -0.581 4.581 10 H 0.108 0.892 11 C -0.123 4.123 12 N -0.511 5.511 13 Si 0.680 3.320 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.184 1.184 17 C 0.346 3.654 18 O -0.442 6.442 19 C -0.102 4.102 20 C -0.090 4.090 21 C -0.113 4.113 22 C -0.024 4.024 23 C -0.053 4.053 24 N -0.104 5.104 25 C -0.106 4.106 26 C -0.123 4.123 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.745 2.080 -4.321 9.973 hybrid contribution 0.050 -0.938 -0.393 1.018 sum 8.795 1.142 -4.713 10.043 Atomic orbital electron populations 1.22117 0.93545 1.04492 1.00625 1.20460 0.94937 0.95672 0.81832 0.89196 1.22688 1.03264 0.99949 0.91680 1.22999 0.92367 1.02105 1.04422 1.22876 0.97917 1.03195 0.97065 1.47765 1.42726 1.16899 1.22665 1.20731 0.96609 0.79329 0.97888 1.21390 1.01229 0.95770 1.39746 0.89245 1.24903 0.94635 0.98694 0.94107 1.69863 1.14104 1.28549 1.38556 0.87168 0.80259 0.84473 0.80100 1.19181 1.20529 1.18443 1.18209 0.78987 0.86209 0.81985 1.90689 1.63686 1.15893 1.73898 1.20242 0.95484 0.97064 0.97376 1.21090 0.94190 0.98553 0.95180 1.20947 0.99762 0.94497 0.96074 1.16225 0.95591 0.97118 0.93491 1.25828 0.93189 0.93216 0.93043 1.81209 1.08951 1.09364 1.10885 1.21297 0.93002 1.00141 0.96138 1.23484 1.04175 0.91886 0.92776 0.92251 0.93359 0.89707 0.87479 0.88841 0.89330 0.89034 0.88746 0.94814 0.92606 0.91958 0.84418 0.84975 0.84745 0.77758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 7.88 37.16 0.29 -2.28 16 2 C 0.17 2.96 2.87 -67.93 -0.20 2.76 16 3 H 0.09 1.59 6.67 -51.93 -0.35 1.24 16 4 C -0.16 -2.30 5.21 -90.62 -0.47 -2.77 16 5 C -0.18 -2.30 10.18 -26.73 -0.27 -2.57 16 6 C -0.17 -2.09 9.73 -26.73 -0.26 -2.35 16 7 N -0.57 -10.68 2.44 -168.55 -0.41 -11.09 16 8 C 0.17 3.42 3.27 -5.19 -0.02 3.40 16 9 C -0.54 -12.38 6.08 -34.44 -0.21 -12.59 16 10 H 0.09 2.30 6.89 -52.49 -0.36 1.94 16 11 C 0.08 1.97 5.35 -17.82 -0.10 1.88 16 12 N -0.88 -22.90 13.96 55.43 0.77 -22.12 16 13 Si 0.85 17.63 27.33 -169.99 -4.65 12.98 16 14 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.26 -5.11 6.54 56.52 0.37 -4.74 16 17 C 0.56 10.63 7.46 -12.30 -0.09 10.54 16 18 O -0.56 -11.66 16.03 5.33 0.09 -11.58 16 19 C -0.10 -1.65 5.60 -104.90 -0.59 -2.24 16 20 C -0.07 -1.00 9.58 -39.25 -0.38 -1.37 16 21 C -0.09 -1.13 9.73 -39.23 -0.38 -1.51 16 22 C -0.02 -0.28 5.73 -106.90 -0.61 -0.89 16 23 C 0.26 3.72 15.32 -22.47 -0.34 3.38 16 24 N -0.43 -6.78 18.54 41.84 0.78 -6.00 16 25 C -0.09 -1.28 9.74 -39.23 -0.38 -1.66 16 26 C -0.11 -1.81 7.48 -39.25 -0.29 -2.11 16 27 H 0.06 1.11 7.55 -51.93 -0.39 0.72 16 28 H 0.05 0.70 7.29 -51.93 -0.38 0.32 16 29 H 0.08 1.62 6.54 -51.93 -0.34 1.28 16 30 H 0.11 1.65 6.84 -51.93 -0.36 1.29 16 31 H 0.09 1.20 8.05 -51.93 -0.42 0.79 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.09 7.61 -51.92 -0.40 0.69 16 35 H 0.03 0.66 5.79 -51.93 -0.30 0.36 16 36 H 0.06 1.06 3.43 -52.31 -0.18 0.88 16 37 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.14 1.77 7.90 -52.48 -0.41 1.35 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.21 3.99 2.84 -52.49 -0.15 3.84 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -26.26 338.37 -7.51 -33.77 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.89 Total: 9.33 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -4.30 Total: -10.39 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 1.14 Total: -39.22 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -4.65 Total: 12.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.26 -7.51 -33.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069580592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.826 kcal (2) G-P(sol) polarization free energy of solvation -26.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds