Wall clock time and date at job start Fri Apr 10 2020 17:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47055 * 2 1 4 4 C 1.53004 * 109.46946 * 240.00348 * 2 1 3 5 5 C 1.52995 * 117.50049 * 128.62339 * 4 2 1 6 6 C 1.52996 * 117.50276 * 59.99632 * 4 2 1 7 7 N 1.46496 * 109.47068 * 119.99842 * 2 1 3 8 8 C 1.46505 * 119.99815 * 54.80735 * 7 2 1 9 9 C 1.50699 * 109.46654 * 278.37278 * 8 7 2 10 10 H 1.07999 * 120.00423 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99669 * 179.97438 * 9 8 7 12 12 N 1.31508 * 120.00088 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00106 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47321 * 89.99473 * 13 11 9 15 15 H 1.48495 * 109.47337 * 210.00090 * 13 11 9 16 16 H 1.48504 * 109.46802 * 329.99780 * 13 11 9 17 17 C 1.34769 * 119.99943 * 234.80306 * 7 2 1 18 18 O 1.21539 * 120.00556 * 6.46547 * 17 7 2 19 19 C 1.47918 * 120.00054 * 186.46614 * 17 7 2 20 20 C 1.39625 * 119.99964 * 150.65836 * 19 17 7 21 21 C 1.37725 * 120.00807 * 180.02562 * 20 19 17 22 22 C 1.39670 * 119.99468 * 359.97438 * 21 20 19 23 23 C 1.43198 * 120.00714 * 180.02562 * 22 21 20 24 24 N 9.03001 * 117.23918 * 115.82493 * 2 1 3 25 25 C 1.39682 * 119.98826 * 0.27590 * 22 21 20 26 26 C 1.37725 * 119.99060 * 359.44301 * 25 22 21 27 27 H 1.09001 * 109.46836 * 300.00335 * 1 2 3 28 28 H 1.09001 * 109.47381 * 59.99757 * 1 2 3 29 29 H 1.08993 * 109.47136 * 179.97438 * 1 2 3 30 30 H 1.08998 * 115.54581 * 274.32851 * 4 2 1 31 31 H 1.08999 * 117.49818 * 359.97438 * 5 4 2 32 32 H 1.08991 * 117.50053 * 145.01831 * 5 4 2 33 33 H 1.08993 * 117.50365 * 214.97901 * 6 4 2 34 34 H 1.09008 * 117.49373 * 0.02562 * 6 4 2 35 35 H 1.08998 * 109.47078 * 38.37609 * 8 7 2 36 36 H 1.09000 * 109.47035 * 158.37264 * 8 7 2 37 37 H 0.97002 * 120.00240 * 179.97438 * 12 11 9 38 38 H 1.08009 * 119.99249 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.99974 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00043 * 179.70302 * 25 22 21 41 41 H 1.08001 * 119.99780 * 180.27662 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1495 -2.6097 7 7 2.0183 -0.6906 1.1962 8 6 1.5731 -2.0557 1.4869 9 6 0.2214 -2.0122 2.1519 10 1 -0.2582 -1.0627 2.3388 11 6 -0.4035 -3.1846 2.5207 12 7 -1.5832 -3.1467 3.1005 13 14 0.4257 -4.8269 2.1967 14 1 1.2641 -5.1971 3.3651 15 1 -0.6091 -5.8696 1.9796 16 1 1.2813 -4.7193 0.9877 17 6 2.8772 -0.0701 2.0290 18 8 3.1555 1.1000 1.8538 19 6 3.4813 -0.8131 3.1564 20 6 4.7460 -0.4573 3.6292 21 6 5.3088 -1.1494 4.6785 22 6 4.6141 -2.2068 5.2702 23 6 5.1988 -2.9262 6.3616 24 7 5.6631 -3.4974 7.2268 25 6 3.3511 -2.5659 4.7937 26 6 2.7863 -1.8698 3.7481 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.1267 -1.8044 -1.1643 31 1 3.3909 0.9970 -1.7893 32 1 3.8415 -0.6000 -2.5942 33 1 1.4568 -0.8565 -3.4197 34 1 1.0066 0.7408 -2.6145 35 1 1.5028 -2.6206 0.5574 36 1 2.2898 -2.5378 2.1517 37 1 -2.0230 -3.9716 3.3597 38 1 5.2833 0.3601 3.1713 39 1 6.2872 -0.8744 5.0438 40 1 2.8159 -3.3866 5.2479 41 1 1.8079 -2.1445 3.3825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069580592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:14 Heat of formation + Delta-G solvation = 60.838998 kcal Electronic energy + Delta-G solvation = -24073.477622 eV Core-core repulsion = 20727.075317 eV Total energy + Delta-G solvation = -3346.402305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67201 -39.86621 -38.52922 -37.50118 -36.72674 -34.50348 -33.07925 -32.20024 -30.95779 -29.97391 -26.27005 -24.75042 -24.41802 -23.65811 -23.06923 -21.57800 -20.29380 -19.85149 -19.00558 -18.30975 -17.71404 -16.58706 -16.19607 -16.11659 -15.94016 -15.62160 -15.17956 -15.10182 -14.84008 -14.76685 -14.61713 -14.21707 -13.90381 -13.80678 -13.57018 -13.40635 -13.23968 -13.00665 -12.77748 -12.66417 -12.45837 -12.28024 -12.04455 -11.72855 -11.63622 -11.46274 -11.25072 -10.84847 -10.78462 -10.70932 -10.04148 -9.84922 -9.41439 -8.26906 -6.32310 -0.56998 0.35788 1.40057 1.45730 1.48196 1.51597 1.53401 2.10800 2.18576 2.34991 2.74531 2.86977 2.98914 3.05676 3.58935 3.79359 3.89560 3.97487 4.06254 4.17088 4.30361 4.33920 4.44061 4.54190 4.59192 4.68667 4.75611 4.81064 4.85718 4.98152 5.04597 5.05029 5.12805 5.18857 5.28545 5.29672 5.32983 5.41436 5.44664 5.57604 5.74595 5.81141 6.20575 6.34755 6.61249 6.77363 7.18275 7.32546 8.87273 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.006387 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.290594 B = 4382.693240 C = 6035.609140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.173 3.827 3 H 0.082 0.918 4 C -0.178 4.178 5 C -0.172 4.172 6 C -0.156 4.156 7 N -0.576 5.576 8 C 0.184 3.816 9 C -0.526 4.526 10 H 0.047 0.953 11 C 0.036 3.964 12 N -0.929 5.929 13 Si 0.908 3.092 14 H -0.251 1.251 15 H -0.289 1.289 16 H -0.240 1.240 17 C 0.550 3.450 18 O -0.584 6.584 19 C -0.114 4.114 20 C -0.065 4.065 21 C -0.066 4.066 22 C -0.012 4.012 23 C 0.282 3.718 24 N -0.453 5.453 25 C -0.084 4.084 26 C -0.124 4.124 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.269 0.731 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.939 1.996 -6.430 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.070 3.930 3 H 0.100 0.900 4 C -0.197 4.197 5 C -0.209 4.209 6 C -0.194 4.194 7 N -0.304 5.304 8 C 0.063 3.937 9 C -0.564 4.564 10 H 0.065 0.935 11 C -0.165 4.165 12 N -0.567 5.567 13 Si 0.731 3.269 14 H -0.175 1.175 15 H -0.215 1.215 16 H -0.163 1.163 17 C 0.340 3.660 18 O -0.467 6.467 19 C -0.118 4.118 20 C -0.084 4.084 21 C -0.086 4.086 22 C -0.015 4.015 23 C -0.033 4.033 24 N -0.128 5.128 25 C -0.104 4.104 26 C -0.142 4.142 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.171 0.829 39 H 0.189 0.811 40 H 0.159 0.841 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.633 1.590 -5.131 12.813 hybrid contribution -0.829 -0.648 -0.109 1.058 sum 10.804 0.942 -5.240 12.045 Atomic orbital electron populations 1.21988 0.94236 1.02886 1.00579 1.20523 0.94312 0.95576 0.82628 0.90031 1.22518 1.06083 0.99411 0.91700 1.23046 0.92947 1.01704 1.03162 1.22998 0.97556 1.03315 0.95504 1.47856 1.42659 1.16640 1.23247 1.20583 0.95097 0.80161 0.97873 1.21360 1.02283 0.93903 1.38889 0.93522 1.25570 0.94919 1.02132 0.93910 1.70011 1.16230 1.29303 1.41177 0.86301 0.79492 0.79838 0.81314 1.17459 1.21548 1.16316 1.18649 0.78849 0.86137 0.82375 1.90660 1.64632 1.16771 1.74669 1.20212 0.96897 0.97368 0.97278 1.21264 0.92964 0.98830 0.95318 1.21300 1.00654 0.92510 0.94164 1.16181 0.94960 0.97270 0.93123 1.25690 0.92468 0.92554 0.92540 1.81250 1.09868 1.10085 1.11640 1.21288 0.93640 1.00031 0.95473 1.23066 1.03461 0.93190 0.94442 0.95085 0.90561 0.91932 0.88151 0.89218 0.87704 0.87219 0.88124 0.94332 0.90931 0.92196 0.82939 0.81066 0.84131 0.80391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 7.88 71.98 0.57 -4.39 16 2 C 0.17 5.93 2.87 44.99 0.13 6.06 16 3 H 0.08 2.93 6.67 -2.39 -0.02 2.91 16 4 C -0.18 -5.03 5.21 -10.80 -0.06 -5.08 16 5 C -0.17 -3.98 10.18 30.59 0.31 -3.66 16 6 C -0.16 -3.42 9.73 30.59 0.30 -3.12 16 7 N -0.58 -21.88 2.44 -805.45 -1.96 -23.84 16 8 C 0.18 7.25 3.27 85.63 0.28 7.53 16 9 C -0.53 -25.00 6.08 25.60 0.16 -24.85 16 10 H 0.05 2.58 6.89 -2.91 -0.02 2.56 16 11 C 0.04 1.75 5.35 84.66 0.45 2.20 16 12 N -0.93 -50.88 13.96 21.45 0.30 -50.58 16 13 Si 0.91 36.19 27.33 68.60 1.87 38.06 16 14 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 15 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.24 -8.71 6.54 99.48 0.65 -8.05 16 17 C 0.55 21.07 7.46 86.81 0.65 21.72 16 18 O -0.58 -24.42 16.03 -3.84 -0.06 -24.48 16 19 C -0.11 -3.73 5.60 -20.04 -0.11 -3.85 16 20 C -0.06 -1.64 9.58 22.48 0.22 -1.42 16 21 C -0.07 -1.35 9.73 22.49 0.22 -1.13 16 22 C -0.01 -0.28 5.73 -21.34 -0.12 -0.40 16 23 C 0.28 7.15 15.32 88.33 1.35 8.51 16 24 N -0.45 -13.18 18.54 19.00 0.35 -12.82 16 25 C -0.08 -2.36 9.74 22.50 0.22 -2.14 16 26 C -0.12 -4.16 7.48 22.48 0.17 -3.99 16 27 H 0.03 1.24 7.55 -2.39 -0.02 1.22 16 28 H 0.08 2.22 7.29 -2.39 -0.02 2.20 16 29 H 0.06 2.49 6.54 -2.39 -0.02 2.48 16 30 H 0.10 2.98 6.84 -2.39 -0.02 2.96 16 31 H 0.09 2.16 8.05 -2.39 -0.02 2.14 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.10 2.08 7.61 -2.38 -0.02 2.06 16 35 H 0.04 1.49 5.79 -2.39 -0.01 1.48 16 36 H 0.07 2.72 3.43 -2.75 -0.01 2.71 16 37 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.15 3.44 7.90 -2.91 -0.02 3.42 16 39 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 41 H 0.18 7.05 2.84 -2.91 -0.01 7.04 16 Total: -1.00 -59.45 338.37 6.24 -53.21 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 1.01 Total: 28.49 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.73 Total: -8.03 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -1.31 Total: -87.24 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.06 Total: -24.48 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 1.87 Total: 38.06 kcal Total: -59.45 6.24 -53.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069580592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.051 kcal (2) G-P(sol) polarization free energy of solvation -59.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds