Wall clock time and date at job start Fri Apr 10 2020 17:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99705 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47255 * 64.99259 * 4 3 2 6 6 C 1.46499 * 120.00032 * 270.00287 * 5 4 3 7 7 C 1.50695 * 109.47254 * 263.61693 * 6 5 4 8 8 H 1.08006 * 119.99901 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00198 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99889 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00131 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47302 * 89.99580 * 11 9 7 13 13 H 1.48505 * 109.47100 * 209.99873 * 11 9 7 14 14 H 1.48503 * 109.46819 * 329.99552 * 11 9 7 15 15 C 1.34777 * 119.99737 * 89.99962 * 5 4 3 16 16 O 1.21498 * 119.99964 * 3.82496 * 15 5 4 17 17 C 1.48331 * 119.99812 * 183.81908 * 15 5 4 18 18 C 1.42269 * 126.93560 * 173.78409 * 17 15 5 19 19 C 1.35317 * 103.92385 * 179.90954 * 18 17 15 20 20 C 1.50698 * 126.66939 * 180.11048 * 19 18 17 21 21 O 1.42894 * 109.47072 * 90.26184 * 20 19 18 22 22 C 1.42902 * 114.00022 * 179.97438 * 21 20 19 23 23 O 1.34022 * 106.66514 * 0.34677 * 19 18 17 24 24 N 1.20910 * 111.84614 * 359.76241 * 23 19 18 25 25 H 1.09007 * 109.47007 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47318 * 300.00271 * 1 2 3 27 27 H 1.08992 * 109.47107 * 60.00431 * 1 2 3 28 28 H 1.08998 * 109.47937 * 59.99680 * 3 2 1 29 29 H 1.09004 * 109.47051 * 299.99080 * 3 2 1 30 30 H 1.09006 * 109.46718 * 304.99632 * 4 3 2 31 31 H 1.08996 * 109.47248 * 185.00054 * 4 3 2 32 32 H 1.08997 * 109.46990 * 23.62273 * 6 5 4 33 33 H 1.09000 * 109.46737 * 143.62036 * 6 5 4 34 34 H 0.97001 * 119.99679 * 180.02562 * 10 9 7 35 35 H 1.08007 * 128.04250 * 0.02562 * 18 17 15 36 36 H 1.09004 * 109.47084 * 210.25804 * 20 19 18 37 37 H 1.09002 * 109.47062 * 330.25789 * 20 19 18 38 38 H 1.08998 * 109.47176 * 299.99982 * 22 21 20 39 39 H 1.09005 * 109.47007 * 60.00216 * 22 21 20 40 40 H 1.08995 * 109.47413 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1053 -0.8921 -1.3425 7 6 5.5394 -1.2850 -1.0976 8 1 6.2802 -0.5256 -0.8948 9 6 5.9058 -2.6137 -1.1323 10 7 5.0038 -3.5383 -1.3798 11 14 7.6833 -3.1007 -0.8280 12 1 7.8899 -3.3384 0.6232 13 1 7.9925 -4.3421 -1.5820 14 1 8.5806 -2.0085 -1.2834 15 6 4.2615 1.3336 -2.3218 16 8 4.2212 2.5442 -2.2273 17 6 4.6252 0.7022 -3.6138 18 6 4.8329 1.3597 -4.8582 19 6 5.1412 0.3546 -5.7101 20 6 5.4621 0.4845 -7.1768 21 8 6.8697 0.6669 -7.3421 22 6 7.2824 0.8010 -8.7036 23 8 5.1007 -0.7795 -4.9971 24 7 4.8145 -0.5739 -3.8405 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8514 0.5683 0.8410 31 1 3.9785 2.1766 0.0889 32 1 3.4671 -1.3606 -0.5933 33 1 3.8025 -1.2232 -2.3359 34 1 5.2615 -4.4731 -1.4039 35 1 4.7628 2.4159 -5.0727 36 1 5.1491 -0.4198 -7.6987 37 1 4.9334 1.3437 -7.5896 38 1 7.0073 -0.0970 -9.2568 39 1 6.7915 1.6666 -9.1485 40 1 8.3632 0.9361 -8.7440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090253653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:35 Heat of formation + Delta-G solvation = -66.726933 kcal Electronic energy + Delta-G solvation = -24890.446898 eV Core-core repulsion = 21095.370905 eV Total energy + Delta-G solvation = -3795.075993 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -46.02626 -40.84548 -38.86466 -38.76492 -36.79115 -34.99806 -34.56209 -33.62263 -31.32847 -28.97858 -28.60178 -27.32366 -26.48211 -25.90584 -24.82800 -23.81563 -22.95324 -20.15560 -18.98574 -18.64938 -18.34332 -18.03493 -17.48034 -17.17056 -17.12517 -16.68621 -16.57224 -16.38778 -16.04944 -15.76656 -15.37454 -14.81100 -14.56728 -14.26868 -13.80238 -13.68485 -13.49410 -13.19210 -13.04559 -12.84460 -12.79751 -12.69420 -12.35000 -12.20390 -12.11271 -11.79208 -11.68005 -11.39670 -11.26695 -10.66470 -10.64838 -10.60301 -10.43137 -9.57838 -8.14593 -6.25351 0.26479 0.61637 1.35669 1.37268 1.46574 1.94025 2.09776 2.20813 2.41568 2.89771 3.08907 3.10515 3.17559 3.56615 3.96645 4.06479 4.08125 4.15585 4.20652 4.34361 4.44759 4.49876 4.53151 4.58103 4.59387 4.60124 4.69982 4.81479 4.82341 4.94182 4.95197 4.99336 5.38323 5.67184 5.80010 6.11832 6.16698 6.23652 6.40499 6.78572 7.02395 7.31083 7.41921 8.92808 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.005897 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.902719 B = 4746.716920 C = 6523.194532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.056 3.944 4 C 0.112 3.888 5 N -0.577 5.577 6 C 0.255 3.745 7 C -0.531 4.531 8 H 0.037 0.963 9 C 0.030 3.970 10 N -0.913 5.913 11 Si 0.947 3.053 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.281 1.281 15 C 0.588 3.412 16 O -0.575 6.575 17 C -0.066 4.066 18 C -0.161 4.161 19 C -0.052 4.052 20 C 0.151 3.849 21 O -0.419 6.419 22 C 0.026 3.974 23 O 0.123 5.877 24 N -0.293 5.293 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.200 0.800 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 9.067 -10.733 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.021 4.021 4 C -0.010 4.010 5 N -0.306 5.306 6 C 0.134 3.866 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.171 4.171 10 N -0.552 5.552 11 Si 0.773 3.227 12 H -0.195 1.195 13 H -0.202 1.202 14 H -0.206 1.206 15 C 0.375 3.625 16 O -0.456 6.456 17 C -0.223 4.223 18 C -0.183 4.183 19 C -0.115 4.115 20 C 0.074 3.926 21 O -0.339 6.339 22 C -0.069 4.069 23 O 0.040 5.960 24 N 0.011 4.989 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.184 8.258 -9.652 13.374 hybrid contribution 0.616 0.306 -0.018 0.688 sum -3.567 8.564 -9.670 13.401 Atomic orbital electron populations 1.22882 0.79801 1.03365 1.00769 1.88015 1.21381 1.28345 1.95515 1.22944 0.92987 0.84851 1.01356 1.21685 0.93484 0.99852 0.86027 1.48140 1.62051 1.09570 1.10870 1.19338 0.95756 0.73369 0.98142 1.21403 0.94395 0.92181 1.48986 0.94457 1.25470 1.00739 0.96204 0.94670 1.70026 1.34866 1.00956 1.49325 0.85735 0.80796 0.77634 0.78538 1.19493 1.20209 1.20596 1.17167 0.77097 0.85587 0.82619 1.90630 1.56838 1.13391 1.84758 1.23594 1.10072 0.90629 0.97995 1.22628 1.04228 1.02537 0.88888 1.24711 1.04274 0.84566 0.97936 1.20905 0.83296 1.04802 0.83600 1.87953 1.22508 1.94352 1.29136 1.23008 1.01654 1.01669 0.80618 1.84912 1.62097 1.34056 1.14910 1.75028 1.11088 1.18060 0.94722 0.89402 0.92016 0.93960 0.89108 0.93971 0.89681 0.88018 0.95733 0.93927 0.92606 0.78290 0.88532 0.86165 0.92285 0.91682 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.98 16 2 O -0.41 -15.21 9.65 -148.98 -1.44 -16.64 16 3 C 0.06 1.83 6.28 71.98 0.45 2.28 16 4 C 0.11 4.32 5.81 86.38 0.50 4.83 16 5 N -0.58 -27.26 2.44 -829.01 -2.02 -29.28 16 6 C 0.25 13.82 4.53 85.63 0.39 14.21 16 7 C -0.53 -30.75 8.46 25.60 0.22 -30.54 16 8 H 0.04 2.23 7.81 -2.91 -0.02 2.20 16 9 C 0.03 1.70 5.46 84.65 0.46 2.17 16 10 N -0.91 -54.46 13.29 21.45 0.28 -54.18 16 11 Si 0.95 45.89 29.54 68.60 2.03 47.91 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 15 C 0.59 27.60 7.64 86.93 0.66 28.27 16 16 O -0.57 -26.75 16.51 -3.71 -0.06 -26.81 16 17 C -0.07 -2.93 6.85 42.96 0.29 -2.64 16 18 C -0.16 -5.51 10.93 22.60 0.25 -5.26 16 19 C -0.05 -1.63 7.10 25.01 0.18 -1.45 16 20 C 0.15 3.00 6.49 71.24 0.46 3.46 16 21 O -0.42 -9.86 10.69 -148.98 -1.59 -11.45 16 22 C 0.03 0.35 11.01 113.37 1.25 1.60 16 23 O 0.12 4.98 11.18 71.82 0.80 5.79 16 24 N -0.29 -14.02 8.05 -49.51 -0.40 -14.41 16 25 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 3.33 8.07 -2.38 -0.02 3.31 16 31 H 0.10 3.65 7.37 -2.39 -0.02 3.63 16 32 H 0.02 1.43 7.25 -2.39 -0.02 1.41 16 33 H 0.04 2.49 5.38 -2.39 -0.01 2.47 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.20 5.54 8.06 -2.91 -0.02 5.51 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -76.16 347.92 5.01 -71.15 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.04 Total: 9.03 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 6.36 Total: 18.90 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -2.13 Total: -97.87 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -2.29 Total: -49.12 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.16 5.01 -71.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090253653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.423 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds