Wall clock time and date at job start Fri Apr 10 2020 17:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34453 * 124.92192 * 2 1 4 4 C 1.34808 * 110.88907 * 179.97438 * 3 2 1 5 5 C 1.38942 * 133.49378 * 179.97438 * 4 3 2 6 6 C 1.37853 * 119.81841 * 180.02562 * 5 4 3 7 7 C 1.38750 * 120.68213 * 0.02562 * 6 5 4 8 8 C 1.36735 * 120.41512 * 0.02562 * 7 6 5 9 9 C 1.39402 * 119.72179 * 359.97438 * 8 7 6 10 10 C 1.33990 * 124.92796 * 179.97438 * 2 1 3 11 11 C 1.50703 * 126.90407 * 0.02624 * 10 2 1 12 12 N 1.46895 * 109.47291 * 269.97071 * 11 10 2 13 13 C 1.46896 * 111.00398 * 169.99739 * 12 11 10 14 14 C 1.50700 * 109.47220 * 284.31013 * 13 12 11 15 15 H 1.07998 * 120.00365 * 4.63737 * 14 13 12 16 16 C 1.37883 * 119.99987 * 184.64727 * 14 13 12 17 17 N 1.31516 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99892 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47101 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46975 * 119.99696 * 18 16 14 21 21 H 1.48497 * 109.46750 * 239.99326 * 18 16 14 22 22 C 1.46894 * 111.00366 * 293.95665 * 12 11 10 23 23 C 1.52999 * 109.47557 * 164.19578 * 22 12 11 24 24 C 1.47206 * 109.47220 * 179.60166 * 23 22 12 25 25 N 6.79061 * 121.33585 * 124.38965 * 2 1 3 26 26 H 1.09001 * 109.47415 * 270.00128 * 1 2 3 27 27 H 1.08999 * 109.47085 * 30.00287 * 1 2 3 28 28 H 1.09003 * 109.47110 * 150.00095 * 1 2 3 29 29 H 1.08003 * 120.09738 * 0.06687 * 5 4 3 30 30 H 1.07998 * 119.65933 * 180.28587 * 6 5 4 31 31 H 1.07996 * 119.78938 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.13907 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47109 * 29.97593 * 11 10 2 34 34 H 1.09003 * 109.47311 * 149.97033 * 11 10 2 35 35 H 1.09001 * 109.46942 * 44.30218 * 13 12 11 36 36 H 1.08993 * 109.47592 * 164.30871 * 13 12 11 37 37 H 0.96995 * 119.99865 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47159 * 284.19684 * 22 12 11 39 39 H 1.08999 * 109.47190 * 44.19317 * 22 12 11 40 40 H 1.08996 * 109.47180 * 299.60314 * 23 22 12 41 41 H 1.08995 * 109.47225 * 59.60198 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2766 1.1024 0.0000 4 6 3.5845 0.7755 0.0006 5 6 4.7567 1.5215 0.0004 6 6 5.9771 0.8806 0.0006 7 6 6.0491 -0.5051 0.0005 8 6 4.9074 -1.2576 -0.0004 9 6 3.6641 -0.6271 -0.0006 10 6 2.2741 -1.0986 0.0005 11 6 1.8042 -2.5304 0.0006 12 7 1.6517 -2.9957 1.3855 13 6 0.9736 -4.2980 1.4318 14 6 -0.4993 -4.1068 1.1771 15 1 -0.8813 -3.1286 0.9247 16 6 -1.3595 -5.1807 1.2664 17 7 -0.8945 -6.3719 1.5734 18 14 -3.1854 -4.9435 0.9513 19 1 -3.4509 -3.5188 0.6274 20 1 -3.6061 -5.7974 -0.1884 21 1 -3.9508 -5.3257 2.1651 22 6 2.9514 -3.0544 2.0674 23 6 2.7309 -3.1530 3.5782 24 6 4.0333 -3.2214 4.2608 25 7 5.0384 -3.2760 4.7863 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 4.7119 2.6006 0.0007 30 1 6.8866 1.4629 0.0051 31 1 7.0129 -0.9923 0.0002 32 1 4.9686 -2.3359 0.0000 33 1 0.8453 -2.5982 -0.5132 34 1 2.5365 -3.1532 -0.5133 35 1 1.3924 -4.9530 0.6678 36 1 1.1170 -4.7476 2.4143 37 1 -1.4997 -7.1273 1.6366 38 1 3.5033 -3.9290 1.7230 39 1 3.5213 -2.1531 1.8415 40 1 2.1853 -2.2750 3.9238 41 1 2.1550 -4.0506 3.8035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097100471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:47 Heat of formation + Delta-G solvation = 53.637880 kcal Electronic energy + Delta-G solvation = -23759.931027 eV Core-core repulsion = 20413.216458 eV Total energy + Delta-G solvation = -3346.714569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33496 -37.86421 -37.56554 -36.13912 -33.49488 -32.66996 -31.06577 -30.91477 -30.25596 -27.81571 -26.55372 -25.01195 -23.22367 -22.78814 -21.54021 -20.74783 -19.29881 -17.35149 -16.90180 -16.64213 -16.49303 -16.08655 -15.31434 -15.09118 -14.62047 -14.28854 -13.93289 -13.87819 -13.65277 -13.44952 -13.15997 -12.88922 -12.57443 -12.52900 -12.17906 -12.14587 -12.06567 -12.02118 -11.62712 -11.31344 -11.25222 -11.02243 -10.88639 -10.72791 -10.56892 -10.37220 -9.86203 -9.73757 -9.28926 -8.53897 -8.49955 -7.85781 -7.41771 -6.09719 -4.11289 1.00562 1.42237 2.51045 2.86261 3.00227 3.05452 3.26415 3.35243 3.37315 3.77185 4.22329 4.39223 4.55847 4.72068 4.94995 5.09334 5.10959 5.27657 5.29620 5.36030 5.40871 5.42084 5.52611 5.56740 5.75629 5.81318 5.85436 5.89461 6.08434 6.13582 6.20537 6.26077 6.34026 6.39222 6.41244 6.51097 6.68774 6.78819 7.06403 7.21751 7.38131 7.71925 7.80850 7.96235 8.07130 8.41056 8.96021 9.53515 11.00753 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.005024 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.897882 B = 5572.289668 C = 6997.287722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.049 3.951 3 O -0.197 6.197 4 C 0.047 3.953 5 C -0.108 4.108 6 C -0.103 4.103 7 C -0.139 4.139 8 C -0.072 4.072 9 C -0.114 4.114 10 C -0.163 4.163 11 C 0.135 3.865 12 N -0.526 5.526 13 C 0.187 3.813 14 C -0.505 4.505 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.285 1.285 22 C 0.056 3.944 23 C -0.027 4.027 24 C 0.220 3.780 25 N -0.460 5.460 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.032 0.968 35 H -0.008 1.008 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 12.581 -4.114 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.001 3.999 3 O -0.099 6.099 4 C 0.000 4.000 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.157 4.157 8 C -0.090 4.090 9 C -0.115 4.115 10 C -0.165 4.165 11 C 0.007 3.993 12 N -0.251 5.251 13 C 0.062 3.938 14 C -0.543 4.543 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.074 4.074 23 C -0.068 4.068 24 C -0.097 4.097 25 N -0.137 5.137 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.050 0.950 35 H 0.010 0.990 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.496 12.899 -3.050 15.744 hybrid contribution -0.776 -0.735 -0.688 1.271 sum 7.720 12.164 -3.738 14.885 Atomic orbital electron populations 1.20455 0.84289 1.03887 1.04529 1.22199 0.93904 0.82833 1.00923 1.83934 1.14797 1.34430 1.76784 1.19549 0.83435 0.93539 1.03505 1.19871 0.88234 0.99433 1.05107 1.20835 0.96330 0.94599 1.00342 1.20726 0.98237 0.93875 1.02852 1.20318 0.90330 1.00000 0.98379 1.19902 0.94038 0.92928 1.04659 1.20958 0.89718 0.96660 1.09140 1.20283 1.00672 0.87481 0.90825 1.62095 1.17080 1.32392 1.13504 1.19884 0.93818 0.82899 0.97178 1.21151 0.91518 0.94939 1.46742 0.91654 1.24970 0.98879 0.95164 0.95448 1.69950 1.35141 0.99764 1.48834 0.86500 0.85243 0.78240 0.77774 1.19579 1.21238 1.21106 1.21986 0.93010 1.00723 0.91636 1.19383 0.86176 1.06643 0.94571 1.29451 0.94908 0.92239 0.93135 1.81120 1.12170 1.10105 1.10333 0.89055 0.91177 0.88328 0.85487 0.85235 0.85751 0.85854 0.88566 0.94962 0.98980 0.94338 0.92929 0.95075 0.90815 0.86904 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.18 36.00 0.37 -0.58 16 2 C 0.05 0.74 7.23 -35.80 -0.26 0.48 16 3 O -0.20 -3.01 10.58 3.90 0.04 -2.97 16 4 C 0.05 0.69 7.42 -38.47 -0.29 0.41 16 5 C -0.11 -1.30 10.07 -39.46 -0.40 -1.70 16 6 C -0.10 -1.11 10.01 -39.53 -0.40 -1.50 16 7 C -0.14 -1.60 9.98 -39.94 -0.40 -2.00 16 8 C -0.07 -0.98 8.90 -39.69 -0.35 -1.33 16 9 C -0.11 -1.73 5.33 -105.16 -0.56 -2.29 16 10 C -0.16 -2.57 5.17 -102.66 -0.53 -3.10 16 11 C 0.13 2.30 5.09 -4.98 -0.03 2.28 16 12 N -0.53 -9.60 4.37 -237.53 -1.04 -10.64 16 13 C 0.19 4.19 4.59 -4.98 -0.02 4.16 16 14 C -0.50 -12.43 8.61 -34.44 -0.30 -12.73 16 15 H 0.07 1.56 7.66 -52.49 -0.40 1.16 16 16 C 0.06 1.47 5.46 -17.82 -0.10 1.37 16 17 N -0.90 -24.68 13.29 55.43 0.74 -23.94 16 18 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 C 0.06 0.90 4.78 -3.83 -0.02 0.88 16 23 C -0.03 -0.40 5.77 -29.52 -0.17 -0.57 16 24 C 0.22 3.42 15.43 -20.77 -0.32 3.10 16 25 N -0.46 -8.03 18.53 42.13 0.78 -7.24 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 1.26 7.06 -51.93 -0.37 0.89 16 29 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.10 1.71 6.26 -51.93 -0.33 1.39 16 34 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 35 H -0.01 -0.19 8.00 -51.93 -0.42 -0.60 16 36 H 0.04 0.91 6.23 -51.93 -0.32 0.58 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.07 1.15 4.75 -51.93 -0.25 0.91 16 40 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.12 1.76 6.52 -51.93 -0.34 1.43 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -28.97 349.29 -8.36 -37.33 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.35 Total: 0.42 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -3.77 Total: -13.12 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.48 Total: -41.83 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.97 -8.36 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097100471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.964 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds