Wall clock time and date at job start Fri Apr 10 2020 17:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34453 * 124.92192 * 2 1 4 4 C 1.34808 * 110.88907 * 179.97438 * 3 2 1 5 5 C 1.38942 * 133.49378 * 179.97438 * 4 3 2 6 6 C 1.37853 * 119.81841 * 180.02562 * 5 4 3 7 7 C 1.38750 * 120.68213 * 0.02562 * 6 5 4 8 8 C 1.36735 * 120.41512 * 0.02562 * 7 6 5 9 9 C 1.39402 * 119.72179 * 359.97438 * 8 7 6 10 10 C 1.33990 * 124.92796 * 179.97438 * 2 1 3 11 11 C 1.50703 * 126.90407 * 0.02624 * 10 2 1 12 12 N 1.46895 * 109.47291 * 269.97071 * 11 10 2 13 13 C 1.46896 * 111.00398 * 169.99739 * 12 11 10 14 14 C 1.50700 * 109.47220 * 284.31013 * 13 12 11 15 15 H 1.07998 * 120.00365 * 4.63737 * 14 13 12 16 16 C 1.37883 * 119.99987 * 184.64727 * 14 13 12 17 17 N 1.31516 * 120.00072 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99892 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47101 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46975 * 119.99696 * 18 16 14 21 21 H 1.48497 * 109.46750 * 239.99326 * 18 16 14 22 22 C 1.46894 * 111.00366 * 293.95665 * 12 11 10 23 23 C 1.52999 * 109.47557 * 164.19578 * 22 12 11 24 24 C 1.47206 * 109.47220 * 179.60166 * 23 22 12 25 25 N 6.79061 * 121.33585 * 124.38965 * 2 1 3 26 26 H 1.09001 * 109.47415 * 270.00128 * 1 2 3 27 27 H 1.08999 * 109.47085 * 30.00287 * 1 2 3 28 28 H 1.09003 * 109.47110 * 150.00095 * 1 2 3 29 29 H 1.08003 * 120.09738 * 0.06687 * 5 4 3 30 30 H 1.07998 * 119.65933 * 180.28587 * 6 5 4 31 31 H 1.07996 * 119.78938 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.13907 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47109 * 29.97593 * 11 10 2 34 34 H 1.09003 * 109.47311 * 149.97033 * 11 10 2 35 35 H 1.09001 * 109.46942 * 44.30218 * 13 12 11 36 36 H 1.08993 * 109.47592 * 164.30871 * 13 12 11 37 37 H 0.96995 * 119.99865 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47159 * 284.19684 * 22 12 11 39 39 H 1.08999 * 109.47190 * 44.19317 * 22 12 11 40 40 H 1.08996 * 109.47180 * 299.60314 * 23 22 12 41 41 H 1.08995 * 109.47225 * 59.60198 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2766 1.1024 0.0000 4 6 3.5845 0.7755 0.0006 5 6 4.7567 1.5215 0.0004 6 6 5.9771 0.8806 0.0006 7 6 6.0491 -0.5051 0.0005 8 6 4.9074 -1.2576 -0.0004 9 6 3.6641 -0.6271 -0.0006 10 6 2.2741 -1.0986 0.0005 11 6 1.8042 -2.5304 0.0006 12 7 1.6517 -2.9957 1.3855 13 6 0.9736 -4.2980 1.4318 14 6 -0.4993 -4.1068 1.1771 15 1 -0.8813 -3.1286 0.9247 16 6 -1.3595 -5.1807 1.2664 17 7 -0.8945 -6.3719 1.5734 18 14 -3.1854 -4.9435 0.9513 19 1 -3.4509 -3.5188 0.6274 20 1 -3.6061 -5.7974 -0.1884 21 1 -3.9508 -5.3257 2.1651 22 6 2.9514 -3.0544 2.0674 23 6 2.7309 -3.1530 3.5782 24 6 4.0333 -3.2214 4.2608 25 7 5.0384 -3.2760 4.7863 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 4.7119 2.6006 0.0007 30 1 6.8866 1.4629 0.0051 31 1 7.0129 -0.9923 0.0002 32 1 4.9686 -2.3359 0.0000 33 1 0.8453 -2.5982 -0.5132 34 1 2.5365 -3.1532 -0.5133 35 1 1.3924 -4.9530 0.6678 36 1 1.1170 -4.7476 2.4143 37 1 -1.4997 -7.1273 1.6366 38 1 3.5033 -3.9290 1.7230 39 1 3.5213 -2.1531 1.8415 40 1 2.1853 -2.2750 3.9238 41 1 2.1550 -4.0506 3.8035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097100471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:47 Heat of formation + Delta-G solvation = 38.841201 kcal Electronic energy + Delta-G solvation = -23760.572660 eV Core-core repulsion = 20413.216458 eV Total energy + Delta-G solvation = -3347.356201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.41782 -39.07484 -38.75806 -37.50667 -34.91148 -34.33763 -32.28116 -32.02509 -31.31044 -29.36088 -27.87850 -26.32058 -24.86656 -23.83238 -22.53821 -22.21612 -20.51267 -18.67533 -18.39788 -17.93800 -17.65558 -17.26487 -16.69390 -16.26044 -16.08394 -15.78157 -15.31275 -15.01798 -14.88698 -14.58103 -14.40509 -14.06716 -13.87975 -13.80333 -13.69146 -13.42606 -13.28584 -13.08101 -12.92660 -12.77276 -12.55139 -12.48141 -12.38248 -12.22612 -12.01531 -11.71567 -11.46802 -11.20787 -10.74933 -10.47691 -9.54141 -9.04439 -8.88196 -8.07394 -6.14436 0.01430 0.43136 1.37672 1.49852 1.53150 1.63524 1.70767 1.76767 1.81562 2.50590 2.78222 2.93752 3.26996 3.52101 3.59291 3.79303 3.96880 4.10751 4.15250 4.19793 4.29643 4.39533 4.48683 4.49846 4.58859 4.72985 4.75706 4.80272 4.88412 4.96930 5.03456 5.07228 5.11661 5.30727 5.36053 5.37659 5.43200 5.55326 5.58014 5.81061 5.81905 6.18053 6.29250 6.38429 6.53536 6.65303 7.01441 7.54659 9.03149 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.005024 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.897882 B = 5572.289668 C = 6997.287722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.049 3.951 3 O -0.203 6.203 4 C 0.024 3.976 5 C -0.110 4.110 6 C -0.095 4.095 7 C -0.135 4.135 8 C -0.093 4.093 9 C -0.133 4.133 10 C -0.183 4.183 11 C 0.143 3.857 12 N -0.522 5.522 13 C 0.200 3.800 14 C -0.506 4.506 15 H 0.072 0.928 16 C 0.005 3.995 17 N -0.936 5.936 18 Si 0.956 3.044 19 H -0.255 1.255 20 H -0.289 1.289 21 H -0.287 1.287 22 C 0.060 3.940 23 C -0.017 4.017 24 C 0.241 3.759 25 N -0.488 5.488 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.152 0.848 30 H 0.168 0.832 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.025 0.975 35 H -0.037 1.037 36 H 0.026 0.974 37 H 0.260 0.740 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.997 14.814 -4.237 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.001 3.999 3 O -0.106 6.106 4 C -0.023 4.023 5 C -0.129 4.129 6 C -0.112 4.112 7 C -0.153 4.153 8 C -0.111 4.111 9 C -0.134 4.134 10 C -0.185 4.185 11 C 0.015 3.985 12 N -0.246 5.246 13 C 0.074 3.926 14 C -0.545 4.545 15 H 0.090 0.910 16 C -0.192 4.192 17 N -0.577 5.577 18 Si 0.782 3.218 19 H -0.179 1.179 20 H -0.215 1.215 21 H -0.213 1.213 22 C -0.070 4.070 23 C -0.058 4.058 24 C -0.076 4.076 25 N -0.166 5.166 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.167 0.833 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.044 0.956 35 H -0.019 1.019 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.100 0.900 40 H 0.149 0.851 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.046 15.162 -3.179 17.939 hybrid contribution -0.812 -1.376 -0.691 1.741 sum 8.234 13.785 -3.870 16.517 Atomic orbital electron populations 1.20515 0.82902 1.04765 1.04836 1.22540 0.94777 0.82659 0.99905 1.83920 1.15282 1.34394 1.76993 1.19998 0.83803 0.93796 1.04698 1.20312 0.87652 1.00753 1.04149 1.21309 0.97255 0.94481 0.98175 1.21109 0.98550 0.94523 1.01087 1.20458 0.90684 1.00197 0.99728 1.20025 0.94095 0.93525 1.05778 1.20805 0.90767 0.95809 1.11070 1.20118 0.99920 0.88621 0.89792 1.62021 1.18306 1.29700 1.14588 1.19575 0.93396 0.84231 0.95356 1.21504 0.92547 0.95024 1.45408 0.90997 1.25747 1.03036 0.94922 0.95519 1.70075 1.36508 1.00592 1.50553 0.85522 0.80247 0.78810 0.77188 1.17904 1.21537 1.21299 1.21979 0.91849 1.00854 0.92270 1.19320 0.85788 1.07216 0.93431 1.29421 0.94530 0.91239 0.92365 1.81140 1.12983 1.11202 1.11318 0.88894 0.88849 0.88889 0.83075 0.81499 0.83296 0.86218 0.89711 0.95639 1.01910 0.95578 0.93121 0.95630 0.89996 0.85145 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 10.18 71.23 0.73 -1.05 16 2 C 0.05 1.45 7.23 24.72 0.18 1.63 16 3 O -0.20 -6.01 10.58 -8.96 -0.09 -6.11 16 4 C 0.02 0.67 7.42 22.99 0.17 0.84 16 5 C -0.11 -2.36 10.07 22.35 0.23 -2.14 16 6 C -0.09 -1.70 10.01 22.30 0.22 -1.47 16 7 C -0.13 -2.77 9.98 22.04 0.22 -2.55 16 8 C -0.09 -2.43 8.90 22.20 0.20 -2.23 16 9 C -0.13 -3.97 5.33 -20.22 -0.11 -4.07 16 10 C -0.18 -5.78 5.17 -18.60 -0.10 -5.88 16 11 C 0.14 4.99 5.09 85.56 0.44 5.43 16 12 N -0.52 -19.30 4.37 -905.40 -3.96 -23.26 16 13 C 0.20 9.21 4.59 85.56 0.39 9.60 16 14 C -0.51 -25.11 8.61 25.60 0.22 -24.89 16 15 H 0.07 3.41 7.66 -2.91 -0.02 3.39 16 16 C 0.01 0.28 5.46 84.66 0.46 0.74 16 17 N -0.94 -52.48 13.29 21.45 0.28 -52.19 16 18 Si 0.96 40.85 29.54 68.60 2.03 42.87 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 20 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 22 C 0.06 1.93 4.78 86.30 0.41 2.34 16 23 C -0.02 -0.49 5.77 28.79 0.17 -0.33 16 24 C 0.24 7.30 15.43 89.45 1.38 8.68 16 25 N -0.49 -16.67 18.53 20.00 0.37 -16.30 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 2.33 7.06 -2.39 -0.02 2.31 16 29 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.08 3.11 6.26 -2.39 -0.01 3.09 16 34 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 35 H -0.04 -1.89 8.00 -2.39 -0.02 -1.91 16 36 H 0.03 1.27 6.23 -2.39 -0.01 1.25 16 37 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.03 0.85 8.05 -2.39 -0.02 0.83 16 39 H 0.08 2.54 4.75 -2.39 -0.01 2.53 16 40 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.11 3.39 6.52 -2.39 -0.02 3.37 16 Total: -1.00 -62.34 349.29 4.88 -57.46 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.04 Total: 12.88 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 5.21 Total: -15.36 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -3.30 Total: -91.75 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.09 Total: -6.11 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -62.34 4.88 -57.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097100471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.301 kcal (2) G-P(sol) polarization free energy of solvation -62.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds