Wall clock time and date at job start Fri Apr 10 2020 17:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46827 * 299.99551 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21558 * 119.99927 * 359.97438 * 14 13 3 16 16 C 1.47767 * 119.99730 * 180.02562 * 14 13 3 17 17 C 1.40627 * 119.80354 * 359.72143 * 16 14 13 18 18 C 1.35700 * 120.91604 * 179.73081 * 17 16 14 19 19 C 1.40756 * 120.11308 * 0.52391 * 18 17 16 20 20 N 1.33649 * 120.82973 * 179.77543 * 19 18 17 21 21 C 1.31122 * 121.39668 * 179.97438 * 20 19 18 22 22 C 1.50695 * 119.12056 * 180.02562 * 21 20 19 23 23 C 1.39312 * 121.76612 * 0.02562 * 21 20 19 24 24 C 1.36587 * 119.90675 * 0.02562 * 23 21 20 25 25 C 1.40885 * 118.15568 * 359.95340 * 24 23 21 26 26 C 1.38554 * 119.80180 * 179.97438 * 16 14 13 27 27 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 29 29 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 30 30 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 31 31 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 32 32 H 0.96993 * 120.00160 * 354.84026 * 8 7 5 33 33 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 34 34 H 1.08003 * 119.54051 * 0.02562 * 17 16 14 35 35 H 1.08004 * 119.94652 * 180.25552 * 18 17 16 36 36 H 1.09000 * 109.47321 * 89.99441 * 22 21 20 37 37 H 1.08997 * 109.47595 * 210.00185 * 22 21 20 38 38 H 1.09007 * 109.46766 * 330.00223 * 22 21 20 39 39 H 1.08009 * 120.04873 * 179.97438 * 23 21 20 40 40 H 1.07993 * 120.92080 * 180.02562 * 24 23 21 41 41 H 1.08000 * 120.29722 * 0.02562 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0025 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3370 2.6312 0.4574 16 6 0.0685 3.3171 2.6534 17 6 0.9776 3.3437 3.7260 18 6 0.6550 3.9456 4.8986 19 6 -0.6079 4.5457 5.0604 20 7 -0.9422 5.1385 6.2106 21 6 -2.1153 5.7014 6.3732 22 6 -2.4382 6.3559 7.6916 23 6 -3.0712 5.7106 5.3598 24 6 -2.7958 5.1217 4.1585 25 6 -1.5342 4.5184 3.9876 26 6 -1.1827 3.8986 2.7804 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9549 0.8550 -0.5315 33 1 2.2901 2.1167 1.9977 34 1 1.9479 2.8829 3.6132 35 1 1.3669 3.9604 5.7107 36 1 -2.1376 7.4032 7.6607 37 1 -3.5104 6.2910 7.8766 38 1 -1.9000 5.8469 8.4914 39 1 -4.0290 6.1820 5.5240 40 1 -3.5245 5.1196 3.3616 41 1 -1.8814 3.8733 1.9573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097140569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:54 Heat of formation + Delta-G solvation = 5.873461 kcal Electronic energy + Delta-G solvation = -23158.833087 eV Core-core repulsion = 19810.047297 eV Total energy + Delta-G solvation = -3348.785790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.05939 -39.39539 -37.07157 -35.29959 -33.73110 -32.71370 -32.18792 -31.25330 -30.18204 -28.36038 -27.04919 -24.04081 -23.59951 -22.35458 -22.14174 -20.87843 -19.74199 -18.48161 -18.01162 -17.15917 -16.51364 -15.76145 -15.46893 -15.03402 -14.74728 -14.54382 -14.04685 -13.94463 -13.54863 -13.38683 -13.25370 -13.20112 -12.66326 -12.52691 -12.50689 -12.34309 -12.10165 -11.81715 -11.52985 -11.28715 -10.92329 -10.76617 -10.71514 -10.45617 -9.91148 -9.70479 -9.63660 -9.33927 -9.06899 -8.86767 -8.39258 -8.36393 -8.11100 -6.60373 -4.24664 0.12511 0.53521 1.79131 2.42655 3.36924 3.43374 3.54186 3.57707 3.81810 3.93473 4.06133 4.35282 4.39939 4.46436 4.59152 4.82743 4.92738 5.04632 5.12487 5.14700 5.20708 5.24681 5.26473 5.58363 5.67492 5.72584 5.83813 5.89894 6.05654 6.07951 6.15011 6.23447 6.27648 6.34071 6.61810 6.68104 6.77641 6.91664 7.02218 7.32634 7.35667 7.61027 7.71780 8.20654 8.39926 8.65971 8.89454 9.44572 10.80516 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.003228 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.541645 B = 8671.799741 C = 9145.697909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.043 0.957 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.693 5.693 14 C 0.543 3.457 15 O -0.546 6.546 16 C -0.123 4.123 17 C -0.071 4.071 18 C -0.103 4.103 19 C 0.145 3.855 20 N -0.479 5.479 21 C 0.160 3.840 22 C -0.107 4.107 23 C -0.181 4.181 24 C -0.044 4.044 25 C -0.117 4.117 26 C -0.033 4.033 27 H 0.031 0.969 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.269 0.731 33 H 0.393 0.607 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 8.796 14.978 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.061 0.939 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.531 5.531 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.340 5.340 14 C 0.328 3.672 15 O -0.426 6.426 16 C -0.127 4.127 17 C -0.091 4.091 18 C -0.121 4.121 19 C 0.024 3.976 20 N -0.189 5.189 21 C 0.007 3.993 22 C -0.164 4.164 23 C -0.200 4.200 24 C -0.069 4.069 25 C -0.119 4.119 26 C -0.052 4.052 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.227 0.773 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.517 8.171 13.337 22.032 hybrid contribution -0.236 0.553 1.336 1.465 sum -15.753 8.723 14.673 23.228 Atomic orbital electron populations 1.21889 0.97378 0.98937 1.01941 1.22365 0.93823 0.99674 1.01962 1.19103 0.95921 0.88613 0.82023 0.93896 1.22085 0.89601 1.49651 1.04219 0.92026 1.25681 0.97538 0.92316 1.01185 1.70874 1.07060 1.40807 1.34314 0.84116 0.75503 0.77744 0.75858 1.20917 1.19452 1.20590 1.46225 1.14244 1.55317 1.18231 1.18132 0.82986 0.79276 0.86778 1.90733 1.51019 1.60282 1.40540 1.20273 0.95353 1.01728 0.95309 1.21078 0.99270 0.96757 0.91998 1.20645 0.94923 0.98344 0.98230 1.18932 0.94268 0.95609 0.88800 1.67877 1.18502 1.09710 1.22809 1.21529 0.88933 0.92784 0.96020 1.20786 1.02250 1.00631 0.92727 1.21690 1.01235 1.02873 0.94245 1.21558 0.94930 0.92993 0.97449 1.18804 0.95651 1.01947 0.95509 1.21433 0.95547 0.92537 0.95732 0.95020 0.93328 0.92981 0.91169 0.93015 0.92084 0.77318 0.84635 0.84296 0.90098 0.90503 0.90266 0.84483 0.84026 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.53 37.15 0.32 -2.58 16 2 C -0.14 -3.09 5.27 -26.73 -0.14 -3.23 16 3 C 0.25 5.82 1.82 -69.08 -0.13 5.69 16 4 H 0.04 1.10 6.25 -51.93 -0.32 0.78 16 5 C -0.62 -16.48 9.01 -34.44 -0.31 -16.79 16 6 H 0.06 1.71 7.96 -52.49 -0.42 1.30 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.01 16 8 N -0.90 -26.52 13.70 55.43 0.76 -25.76 16 9 Si 1.04 24.87 26.27 -169.99 -4.47 20.40 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -5.98 5.67 56.52 0.32 -5.66 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.69 -13.88 4.98 -55.90 -0.28 -14.16 16 14 C 0.54 10.38 6.36 -12.36 -0.08 10.30 16 15 O -0.55 -11.82 13.45 5.31 0.07 -11.75 16 16 C -0.12 -1.92 5.87 -104.98 -0.62 -2.54 16 17 C -0.07 -0.95 9.44 -39.59 -0.37 -1.33 16 18 C -0.10 -1.32 9.95 -39.54 -0.39 -1.71 16 19 C 0.15 1.97 6.61 -84.78 -0.56 1.41 16 20 N -0.48 -6.16 10.23 -7.17 -0.07 -6.23 16 21 C 0.16 1.62 6.78 -82.50 -0.56 1.06 16 22 C -0.11 -0.69 10.14 36.00 0.37 -0.33 16 23 C -0.18 -1.58 9.64 -39.78 -0.38 -1.97 16 24 C -0.04 -0.44 9.89 -39.18 -0.39 -0.82 16 25 C -0.12 -1.51 5.74 -106.82 -0.61 -2.12 16 26 C -0.03 -0.46 9.35 -38.74 -0.36 -0.82 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 29 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 30 H 0.07 1.62 4.74 -51.93 -0.25 1.37 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 33 H 0.39 6.99 6.51 -40.82 -0.27 6.73 16 34 H 0.14 1.62 6.35 -52.48 -0.33 1.29 16 35 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.14 1.94 7.62 -52.49 -0.40 1.54 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -32.06 334.67 -8.56 -40.62 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.30 Total: 6.60 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -4.32 Total: -14.77 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.41 Total: -46.15 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -4.47 Total: 20.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.06 -8.56 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.491 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds