Wall clock time and date at job start Fri Apr 10 2020 17:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46827 * 299.99551 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21558 * 119.99927 * 359.97438 * 14 13 3 16 16 C 1.47767 * 119.99730 * 180.02562 * 14 13 3 17 17 C 1.40627 * 119.80354 * 359.72143 * 16 14 13 18 18 C 1.35700 * 120.91604 * 179.73081 * 17 16 14 19 19 C 1.40756 * 120.11308 * 0.52391 * 18 17 16 20 20 N 1.33649 * 120.82973 * 179.77543 * 19 18 17 21 21 C 1.31122 * 121.39668 * 179.97438 * 20 19 18 22 22 C 1.50695 * 119.12056 * 180.02562 * 21 20 19 23 23 C 1.39312 * 121.76612 * 0.02562 * 21 20 19 24 24 C 1.36587 * 119.90675 * 0.02562 * 23 21 20 25 25 C 1.40885 * 118.15568 * 359.95340 * 24 23 21 26 26 C 1.38554 * 119.80180 * 179.97438 * 16 14 13 27 27 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 29 29 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 30 30 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 31 31 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 32 32 H 0.96993 * 120.00160 * 354.84026 * 8 7 5 33 33 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 34 34 H 1.08003 * 119.54051 * 0.02562 * 17 16 14 35 35 H 1.08004 * 119.94652 * 180.25552 * 18 17 16 36 36 H 1.09000 * 109.47321 * 89.99441 * 22 21 20 37 37 H 1.08997 * 109.47595 * 210.00185 * 22 21 20 38 38 H 1.09007 * 109.46766 * 330.00223 * 22 21 20 39 39 H 1.08009 * 120.04873 * 179.97438 * 23 21 20 40 40 H 1.07993 * 120.92080 * 180.02562 * 24 23 21 41 41 H 1.08000 * 120.29722 * 0.02562 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0025 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3370 2.6312 0.4574 16 6 0.0685 3.3171 2.6534 17 6 0.9776 3.3437 3.7260 18 6 0.6550 3.9456 4.8986 19 6 -0.6079 4.5457 5.0604 20 7 -0.9422 5.1385 6.2106 21 6 -2.1153 5.7014 6.3732 22 6 -2.4382 6.3559 7.6916 23 6 -3.0712 5.7106 5.3598 24 6 -2.7958 5.1217 4.1585 25 6 -1.5342 4.5184 3.9876 26 6 -1.1827 3.8986 2.7804 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9549 0.8550 -0.5315 33 1 2.2901 2.1167 1.9977 34 1 1.9479 2.8829 3.6132 35 1 1.3669 3.9604 5.7107 36 1 -2.1376 7.4032 7.6607 37 1 -3.5104 6.2910 7.8766 38 1 -1.9000 5.8469 8.4914 39 1 -4.0290 6.1820 5.5240 40 1 -3.5245 5.1196 3.3616 41 1 -1.8814 3.8733 1.9573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097140569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:52 Heat of formation + Delta-G solvation = -14.530330 kcal Electronic energy + Delta-G solvation = -23159.717862 eV Core-core repulsion = 19810.047297 eV Total energy + Delta-G solvation = -3349.670564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.00958 -40.82260 -38.14935 -37.03502 -34.68846 -34.43144 -33.60755 -32.57279 -31.13782 -29.57312 -28.56674 -25.03111 -24.77503 -24.03497 -23.10094 -22.28741 -21.41354 -20.14084 -19.08484 -18.69893 -17.60361 -17.00960 -16.81604 -16.39664 -15.78166 -15.62367 -15.47457 -15.09508 -14.86079 -14.55553 -14.53546 -14.37238 -14.20104 -13.94916 -13.80522 -13.57800 -13.11285 -13.00652 -12.70849 -12.50498 -12.47150 -12.32866 -12.22204 -11.78941 -11.63492 -11.41614 -11.13337 -10.88895 -10.54096 -10.49217 -9.92356 -9.72675 -9.33468 -8.80911 -6.45802 -0.82251 -0.38234 0.84756 1.39558 1.45285 1.50403 1.69338 2.31048 2.35211 2.41546 2.99973 3.03233 3.13031 3.52373 3.63997 3.69971 3.85387 3.96066 4.02666 4.22031 4.31624 4.38372 4.39363 4.52332 4.66731 4.78454 4.80599 4.82929 4.87117 4.93793 4.98664 5.08781 5.17336 5.19080 5.19477 5.23356 5.30357 5.48652 5.53277 5.61495 5.66513 5.74031 5.99446 6.50820 6.76710 6.87753 7.24825 7.35766 8.58890 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.003228 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.541645 B = 8671.799741 C = 9145.697909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.025 0.975 5 C -0.614 4.614 6 H 0.040 0.960 7 C -0.005 4.005 8 N -0.928 5.928 9 Si 1.071 2.929 10 H -0.283 1.283 11 H -0.242 1.242 12 H -0.274 1.274 13 N -0.696 5.696 14 C 0.546 3.454 15 O -0.574 6.574 16 C -0.148 4.148 17 C -0.074 4.074 18 C -0.105 4.105 19 C 0.131 3.869 20 N -0.510 5.510 21 C 0.158 3.842 22 C -0.106 4.106 23 C -0.171 4.171 24 C -0.047 4.047 25 C -0.134 4.134 26 C -0.024 4.024 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.258 0.742 33 H 0.401 0.599 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.179 0.821 40 H 0.169 0.831 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.964 9.807 16.442 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.043 0.957 5 C -0.652 4.652 6 H 0.058 0.942 7 C -0.205 4.205 8 N -0.563 5.563 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.166 1.166 12 H -0.200 1.200 13 N -0.345 5.345 14 C 0.334 3.666 15 O -0.456 6.456 16 C -0.151 4.151 17 C -0.095 4.095 18 C -0.123 4.123 19 C 0.010 3.990 20 N -0.220 5.220 21 C 0.006 3.994 22 C -0.163 4.163 23 C -0.190 4.190 24 C -0.073 4.073 25 C -0.136 4.136 26 C -0.044 4.044 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.237 0.763 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.196 0.804 40 H 0.187 0.813 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.706 9.191 14.846 25.589 hybrid contribution 0.635 0.412 1.103 1.338 sum -18.071 9.603 15.949 25.945 Atomic orbital electron populations 1.21769 0.95506 1.00435 1.01405 1.22259 0.95414 0.98194 1.01665 1.18811 0.93582 0.89795 0.83136 0.95696 1.22278 0.91406 1.48214 1.03296 0.94214 1.26828 0.97710 0.92028 1.03973 1.70977 1.08044 1.43254 1.34010 0.83730 0.75210 0.78700 0.73038 1.20864 1.16638 1.19966 1.46052 1.15223 1.55795 1.17420 1.18560 0.81979 0.78376 0.87682 1.90700 1.51647 1.61352 1.41920 1.19984 0.96865 1.03991 0.94280 1.21070 0.99287 0.97275 0.91824 1.20808 0.95353 0.97946 0.98215 1.19174 0.94612 0.95775 0.89471 1.67946 1.20246 1.11218 1.22612 1.22315 0.88207 0.91095 0.97764 1.20928 1.04107 1.00750 0.90486 1.22153 1.02379 1.01468 0.92986 1.21935 0.94154 0.92249 0.98918 1.18970 0.97108 1.02716 0.94800 1.21523 0.94837 0.91702 0.96337 0.92423 0.93534 0.93864 0.92022 0.92734 0.93284 0.76279 0.83946 0.82957 0.88797 0.87582 0.90767 0.80375 0.81340 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.53 71.98 0.61 -4.59 16 2 C -0.14 -5.97 5.27 30.59 0.16 -5.80 16 3 C 0.25 11.95 1.82 44.25 0.08 12.03 16 4 H 0.03 1.30 6.25 -2.39 -0.01 1.28 16 5 C -0.61 -33.53 9.01 25.60 0.23 -33.29 16 6 H 0.04 2.29 7.96 -2.91 -0.02 2.27 16 7 C 0.00 -0.26 5.32 84.66 0.45 0.19 16 8 N -0.93 -56.21 13.70 21.45 0.29 -55.92 16 9 Si 1.07 50.22 26.27 68.60 1.80 52.02 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.24 -10.26 5.67 99.48 0.56 -9.69 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 N -0.70 -28.33 4.98 -449.05 -2.23 -30.56 16 14 C 0.55 21.08 6.36 86.76 0.55 21.63 16 15 O -0.57 -24.99 13.45 -3.90 -0.05 -25.04 16 16 C -0.15 -4.63 5.87 -20.10 -0.12 -4.75 16 17 C -0.07 -2.01 9.44 22.26 0.21 -1.80 16 18 C -0.10 -2.65 9.95 22.30 0.22 -2.43 16 19 C 0.13 3.42 6.61 40.35 0.27 3.69 16 20 N -0.51 -12.26 10.23 -176.59 -1.81 -14.06 16 21 C 0.16 2.72 6.78 42.92 0.29 3.01 16 22 C -0.11 -0.98 10.14 71.23 0.72 -0.26 16 23 C -0.17 -2.29 9.64 22.14 0.21 -2.08 16 24 C -0.05 -0.80 9.89 22.53 0.22 -0.58 16 25 C -0.13 -3.26 5.74 -21.29 -0.12 -3.38 16 26 C -0.02 -0.67 9.35 22.82 0.21 -0.45 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 1.81 5.63 -2.39 -0.01 1.80 16 29 H 0.04 1.74 7.88 -2.38 -0.02 1.72 16 30 H 0.06 2.78 4.74 -2.39 -0.01 2.77 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.26 15.65 8.73 -92.71 -0.81 14.84 16 33 H 0.40 14.67 6.51 -92.71 -0.60 14.07 16 34 H 0.14 3.49 6.35 -2.91 -0.02 3.47 16 35 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.11 0.39 8.07 -2.39 -0.02 0.37 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.15 3.86 7.62 -2.91 -0.02 3.84 16 Total: -1.00 -70.83 334.67 2.49 -68.34 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.28 Total: 24.10 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.21 Total: -18.88 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -3.75 Total: -100.54 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.80 Total: 52.02 kcal Total: -70.83 2.49 -68.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.814 kcal (2) G-P(sol) polarization free energy of solvation -70.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds