Wall clock time and date at job start Fri Apr 10 2020 17:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34233 * 116.99847 * 2 1 4 4 O 1.20821 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00036 * 179.97438 * 3 2 1 6 6 N 1.46898 * 109.47037 * 40.23953 * 5 3 2 7 7 C 1.46906 * 110.99954 * 58.63980 * 6 5 3 8 8 C 1.50699 * 109.47221 * 180.54535 * 7 6 5 9 9 O 1.21296 * 119.99965 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.37099 * 120.00163 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99832 * 359.97438 * 11 10 8 13 13 C 1.38943 * 119.99822 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00018 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00338 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47123 * 90.00118 * 15 13 11 17 17 H 1.48497 * 109.47274 * 210.00456 * 15 13 11 18 18 H 1.48504 * 109.47331 * 330.00441 * 15 13 11 19 19 C 1.52995 * 109.47092 * 160.24113 * 5 3 2 20 20 C 1.52999 * 109.47322 * 60.00207 * 19 5 3 21 21 C 1.52995 * 109.47009 * 59.99861 * 20 19 5 22 22 C 1.52999 * 109.47009 * 179.97438 * 21 20 19 23 23 C 1.52995 * 109.47192 * 300.00219 * 21 20 19 24 24 C 1.52995 * 109.47248 * 280.24258 * 5 3 2 25 25 H 1.09005 * 109.47063 * 299.99774 * 1 2 3 26 26 H 1.08991 * 109.47349 * 60.00222 * 1 2 3 27 27 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.00905 * 111.00458 * 294.68674 * 6 5 3 29 29 H 1.08999 * 109.47263 * 300.54388 * 7 6 5 30 30 H 1.08997 * 109.47008 * 60.54545 * 7 6 5 31 31 H 0.97003 * 119.99621 * 359.97438 * 10 8 7 32 32 H 0.97000 * 120.00401 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.46990 * 180.02562 * 19 5 3 34 34 H 1.09007 * 109.46959 * 299.99826 * 19 5 3 35 35 H 1.08999 * 109.46716 * 299.99821 * 20 19 5 36 36 H 1.09005 * 109.47243 * 180.02562 * 20 19 5 37 37 H 1.08999 * 109.47413 * 60.00388 * 21 20 19 38 38 H 1.08997 * 109.47390 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47347 * 300.00487 * 22 21 20 40 40 H 1.09004 * 109.47131 * 59.99795 * 22 21 20 41 41 H 1.09002 * 109.46990 * 299.99607 * 23 21 20 42 42 H 1.09006 * 109.47430 * 180.02562 * 23 21 20 43 43 H 1.09005 * 109.47272 * 59.99868 * 24 5 3 44 44 H 1.08999 * 109.47413 * 180.02562 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1110 0.2447 -0.8937 7 6 3.6045 0.4141 -2.2622 8 6 4.1731 -0.6663 -3.1457 9 8 4.9266 -1.4955 -2.6811 10 7 3.8452 -0.7105 -4.4522 11 6 4.3621 -1.6936 -5.2558 12 1 5.0323 -2.4325 -4.8420 13 6 4.0237 -1.7394 -6.6026 14 7 4.5187 -2.6822 -7.3729 15 14 2.8639 -0.4619 -7.3183 16 1 3.6487 0.6988 -7.8104 17 1 2.1040 -1.0594 -8.4455 18 1 1.9168 -0.0094 -6.2678 19 6 4.0046 2.6572 -0.4872 20 6 3.4374 3.7303 0.4442 21 6 3.9596 3.5012 1.8640 22 6 3.3928 4.5747 2.7952 23 6 3.5212 2.1189 2.3517 24 6 4.0884 1.0458 1.4203 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9086 -0.6804 -0.5452 29 1 2.5167 0.3450 -2.2582 30 1 3.9052 1.3903 -2.6426 31 1 3.2429 -0.0470 -4.8238 32 1 4.2822 -2.7144 -8.3130 33 1 5.0932 2.7141 -0.4872 34 1 3.6326 2.8204 -1.4987 35 1 2.3489 3.6732 0.4438 36 1 3.7493 4.7152 0.0965 37 1 5.0481 3.5583 1.8644 38 1 3.7651 4.4117 3.8066 39 1 3.7054 5.5593 2.4476 40 1 2.3042 4.5181 2.7949 41 1 2.4327 2.0619 2.3514 42 1 3.8928 1.9558 3.3634 43 1 3.7761 0.0610 1.7678 44 1 5.1769 1.1033 1.4208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118863248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:58 Heat of formation + Delta-G solvation = -123.330018 kcal Electronic energy + Delta-G solvation = -25693.656846 eV Core-core repulsion = 22031.959454 eV Total energy + Delta-G solvation = -3661.697393 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40519 -38.71540 -38.27003 -36.40399 -35.43970 -33.93574 -31.74254 -31.38456 -30.82118 -28.24570 -27.26000 -25.38737 -23.85709 -23.16251 -22.71205 -20.51285 -19.87640 -19.38330 -18.36618 -17.49822 -16.79781 -16.67008 -15.95108 -15.38584 -15.00136 -14.77554 -14.52532 -14.44200 -14.11725 -14.04311 -13.42221 -13.25619 -12.96541 -12.77666 -12.66644 -12.43052 -12.37621 -12.28697 -12.04683 -11.94197 -11.71801 -11.49136 -11.21414 -11.13868 -11.02572 -10.86926 -10.60287 -10.57723 -10.11684 -9.98305 -9.81750 -9.58135 -8.66954 -8.34489 -8.18884 -6.31904 -3.83351 2.06872 2.57983 3.02232 3.06762 3.14708 3.71059 3.88873 4.09754 4.38073 4.47922 4.67680 4.73973 4.79014 4.88771 4.96962 5.03842 5.06651 5.20431 5.27060 5.35575 5.38074 5.39083 5.48153 5.54844 5.63131 5.64420 5.69717 5.75969 5.84933 5.85536 5.96340 6.02561 6.07446 6.10319 6.15049 6.19945 6.64517 6.86547 7.41097 7.56284 7.67060 8.12977 8.58148 8.93624 9.41098 9.80321 10.81120 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.003858 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.643227 B = 7256.542673 C = 7414.255611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.436 3.564 4 O -0.501 6.501 5 C 0.134 3.866 6 N -0.641 5.641 7 C 0.040 3.960 8 C 0.454 3.546 9 O -0.562 6.562 10 N -0.589 5.589 11 C -0.305 4.305 12 H 0.121 0.879 13 C 0.042 3.958 14 N -0.881 5.881 15 Si 0.878 3.122 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.270 1.270 19 C -0.097 4.097 20 C -0.140 4.140 21 C -0.091 4.091 22 C -0.145 4.145 23 C -0.117 4.117 24 C -0.106 4.106 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.363 0.637 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.370 0.630 32 H 0.273 0.727 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 12.849 18.098 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.277 3.723 4 O -0.388 6.388 5 C 0.041 3.959 6 N -0.274 5.274 7 C -0.092 4.092 8 C 0.239 3.761 9 O -0.444 6.444 10 N -0.229 5.229 11 C -0.433 4.433 12 H 0.138 0.862 13 C -0.161 4.161 14 N -0.521 5.521 15 Si 0.705 3.295 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.196 1.196 19 C -0.135 4.135 20 C -0.178 4.178 21 C -0.110 4.110 22 C -0.203 4.203 23 C -0.155 4.155 24 C -0.144 4.144 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.185 0.815 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.203 0.797 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.114 12.777 18.057 22.950 hybrid contribution -2.169 0.640 -0.805 2.400 sum -8.283 13.417 17.252 23.372 Atomic orbital electron populations 1.23257 0.76608 1.03819 1.02268 1.86579 1.23366 1.33778 1.83638 1.25567 0.93800 0.81358 0.71547 1.90470 1.67413 1.35603 1.45294 1.21255 0.82678 0.95868 0.96132 1.60244 1.59848 1.06945 1.00397 1.21866 0.97163 1.00390 0.89816 1.19508 0.86051 0.87789 0.82716 1.90571 1.38340 1.41689 1.73758 1.42188 1.43784 1.28609 1.08278 1.19434 1.26581 1.07170 0.90131 0.86170 1.25027 0.97875 0.97238 0.95927 1.69620 1.43714 1.32272 1.06444 0.86693 0.81171 0.81916 0.79745 1.19516 1.20136 1.19596 1.21538 1.02073 0.90402 0.99449 1.22146 1.04560 0.97632 0.93434 1.21131 1.00275 0.94241 0.95306 1.21800 1.01040 0.98477 0.98936 1.21653 1.00681 0.94348 0.98803 1.21594 1.02689 0.99514 0.90561 0.92080 0.91941 0.88037 0.81517 0.93836 0.88934 0.79728 0.91590 0.89482 0.91333 0.87764 0.92073 0.91135 0.92946 0.92752 0.92815 0.92309 0.91212 0.90788 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.76 9.73 -39.27 -0.38 -5.14 16 3 C 0.44 5.91 4.18 36.01 0.15 6.06 16 4 O -0.50 -7.25 12.66 -18.75 -0.24 -7.49 16 5 C 0.13 1.71 0.68 -132.76 -0.09 1.62 16 6 N -0.64 -9.96 5.64 -102.40 -0.58 -10.54 16 7 C 0.04 0.69 5.48 -4.97 -0.03 0.66 16 8 C 0.45 10.35 7.82 -10.98 -0.09 10.27 16 9 O -0.56 -14.95 15.77 5.54 0.09 -14.87 16 10 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 11 C -0.30 -8.62 10.16 -14.93 -0.15 -8.78 16 12 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 14 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 15 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 19 C -0.10 -1.16 4.36 -26.73 -0.12 -1.28 16 20 C -0.14 -1.51 4.91 -26.73 -0.13 -1.64 16 21 C -0.09 -0.84 2.72 -90.63 -0.25 -1.09 16 22 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 23 C -0.12 -1.10 4.98 -26.73 -0.13 -1.24 16 24 C -0.11 -1.12 4.97 -26.73 -0.13 -1.25 16 25 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.36 5.91 8.12 -39.29 -0.32 5.59 16 29 H 0.04 0.72 6.72 -51.93 -0.35 0.37 16 30 H 0.09 1.44 6.36 -51.93 -0.33 1.11 16 31 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 35 H 0.10 1.31 4.94 -51.97 -0.26 1.06 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.62 7.01 -51.93 -0.36 0.26 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -32.37 345.54 -6.37 -38.74 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.82 Total: 13.50 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 0.35 Total: 4.98 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.14 Total: -49.68 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.53 Total: -27.50 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.37 -6.37 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118863248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.594 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds