Wall clock time and date at job start Fri Apr 10 2020 17:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34233 * 116.99847 * 2 1 4 4 O 1.20821 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00036 * 179.97438 * 3 2 1 6 6 N 1.46898 * 109.47037 * 40.23953 * 5 3 2 7 7 C 1.46906 * 110.99954 * 58.63980 * 6 5 3 8 8 C 1.50699 * 109.47221 * 180.54535 * 7 6 5 9 9 O 1.21296 * 119.99965 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00217 * 180.02562 * 8 7 6 11 11 C 1.37099 * 120.00163 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99832 * 359.97438 * 11 10 8 13 13 C 1.38943 * 119.99822 * 179.97438 * 11 10 8 14 14 N 1.31417 * 120.00018 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00338 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47123 * 90.00118 * 15 13 11 17 17 H 1.48497 * 109.47274 * 210.00456 * 15 13 11 18 18 H 1.48504 * 109.47331 * 330.00441 * 15 13 11 19 19 C 1.52995 * 109.47092 * 160.24113 * 5 3 2 20 20 C 1.52999 * 109.47322 * 60.00207 * 19 5 3 21 21 C 1.52995 * 109.47009 * 59.99861 * 20 19 5 22 22 C 1.52999 * 109.47009 * 179.97438 * 21 20 19 23 23 C 1.52995 * 109.47192 * 300.00219 * 21 20 19 24 24 C 1.52995 * 109.47248 * 280.24258 * 5 3 2 25 25 H 1.09005 * 109.47063 * 299.99774 * 1 2 3 26 26 H 1.08991 * 109.47349 * 60.00222 * 1 2 3 27 27 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.00905 * 111.00458 * 294.68674 * 6 5 3 29 29 H 1.08999 * 109.47263 * 300.54388 * 7 6 5 30 30 H 1.08997 * 109.47008 * 60.54545 * 7 6 5 31 31 H 0.97003 * 119.99621 * 359.97438 * 10 8 7 32 32 H 0.97000 * 120.00401 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.46990 * 180.02562 * 19 5 3 34 34 H 1.09007 * 109.46959 * 299.99826 * 19 5 3 35 35 H 1.08999 * 109.46716 * 299.99821 * 20 19 5 36 36 H 1.09005 * 109.47243 * 180.02562 * 20 19 5 37 37 H 1.08999 * 109.47413 * 60.00388 * 21 20 19 38 38 H 1.08997 * 109.47390 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.47347 * 300.00487 * 22 21 20 40 40 H 1.09004 * 109.47131 * 59.99795 * 22 21 20 41 41 H 1.09002 * 109.46990 * 299.99607 * 23 21 20 42 42 H 1.09006 * 109.47430 * 180.02562 * 23 21 20 43 43 H 1.09005 * 109.47272 * 59.99868 * 24 5 3 44 44 H 1.08999 * 109.47413 * 180.02562 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 4.1110 0.2447 -0.8937 7 6 3.6045 0.4141 -2.2622 8 6 4.1731 -0.6663 -3.1457 9 8 4.9266 -1.4955 -2.6811 10 7 3.8452 -0.7105 -4.4522 11 6 4.3621 -1.6936 -5.2558 12 1 5.0323 -2.4325 -4.8420 13 6 4.0237 -1.7394 -6.6026 14 7 4.5187 -2.6822 -7.3729 15 14 2.8639 -0.4619 -7.3183 16 1 3.6487 0.6988 -7.8104 17 1 2.1040 -1.0594 -8.4455 18 1 1.9168 -0.0094 -6.2678 19 6 4.0046 2.6572 -0.4872 20 6 3.4374 3.7303 0.4442 21 6 3.9596 3.5012 1.8640 22 6 3.3928 4.5747 2.7952 23 6 3.5212 2.1189 2.3517 24 6 4.0884 1.0458 1.4203 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9086 -0.6804 -0.5452 29 1 2.5167 0.3450 -2.2582 30 1 3.9052 1.3903 -2.6426 31 1 3.2429 -0.0470 -4.8238 32 1 4.2822 -2.7144 -8.3130 33 1 5.0932 2.7141 -0.4872 34 1 3.6326 2.8204 -1.4987 35 1 2.3489 3.6732 0.4438 36 1 3.7493 4.7152 0.0965 37 1 5.0481 3.5583 1.8644 38 1 3.7651 4.4117 3.8066 39 1 3.7054 5.5593 2.4476 40 1 2.3042 4.5181 2.7949 41 1 2.4327 2.0619 2.3514 42 1 3.8928 1.9558 3.3634 43 1 3.7761 0.0610 1.7678 44 1 5.1769 1.1033 1.4208 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118863248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:57 Heat of formation + Delta-G solvation = -146.479377 kcal Electronic energy + Delta-G solvation = -25694.660678 eV Core-core repulsion = 22031.959454 eV Total energy + Delta-G solvation = -3662.701224 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.41558 -40.30705 -39.44463 -37.45609 -36.59700 -35.88910 -33.78080 -32.43340 -31.72362 -29.20573 -28.52083 -26.72191 -25.33267 -24.06587 -23.70418 -21.44029 -21.22132 -20.81087 -20.28251 -18.61828 -18.06030 -17.68813 -17.21457 -16.96540 -16.47615 -16.16234 -15.77722 -15.28291 -15.25053 -15.09675 -14.91342 -14.46140 -14.35487 -14.16277 -13.81166 -13.71056 -13.48108 -13.21589 -13.19115 -13.01063 -12.83090 -12.80838 -12.43682 -12.28642 -12.02322 -11.99858 -11.86532 -11.76108 -11.54128 -11.38717 -10.94208 -10.74986 -10.49456 -10.27164 -9.65092 -8.42779 -6.03640 1.03299 1.28478 1.33255 1.41880 1.63929 1.89231 2.20715 2.53377 3.12186 3.22974 3.48288 3.58050 3.82637 3.94133 4.04969 4.08930 4.18569 4.21632 4.23355 4.26439 4.34711 4.47307 4.55817 4.59557 4.63250 4.78278 4.86454 4.94082 4.96855 5.04805 5.09097 5.20153 5.21372 5.33715 5.39541 5.45144 5.48820 5.66318 5.82404 5.93618 6.14067 6.55805 6.66083 6.84759 7.35440 7.89915 8.74570 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.003858 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.643227 B = 7256.542673 C = 7414.255611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.436 3.564 4 O -0.511 6.511 5 C 0.135 3.865 6 N -0.648 5.648 7 C 0.056 3.944 8 C 0.455 3.545 9 O -0.605 6.605 10 N -0.589 5.589 11 C -0.328 4.328 12 H 0.060 0.940 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.960 3.040 16 H -0.256 1.256 17 H -0.273 1.273 18 H -0.237 1.237 19 C -0.098 4.098 20 C -0.135 4.135 21 C -0.091 4.091 22 C -0.142 4.142 23 C -0.111 4.111 24 C -0.104 4.104 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.122 0.878 28 H 0.357 0.643 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.388 0.612 32 H 0.280 0.720 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 15.493 18.974 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.278 3.722 4 O -0.399 6.399 5 C 0.042 3.958 6 N -0.281 5.281 7 C -0.076 4.076 8 C 0.243 3.757 9 O -0.489 6.489 10 N -0.231 5.231 11 C -0.457 4.457 12 H 0.078 0.922 13 C -0.210 4.210 14 N -0.572 5.572 15 Si 0.780 3.220 16 H -0.180 1.180 17 H -0.198 1.198 18 H -0.161 1.161 19 C -0.136 4.136 20 C -0.173 4.173 21 C -0.109 4.109 22 C -0.200 4.200 23 C -0.149 4.149 24 C -0.142 4.142 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.178 0.822 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.223 0.777 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.640 15.440 18.960 25.617 hybrid contribution -1.648 -0.276 -0.992 1.944 sum -9.288 15.163 17.968 25.280 Atomic orbital electron populations 1.23509 0.75067 1.05394 1.02619 1.86568 1.25007 1.33707 1.83467 1.25611 0.94000 0.81303 0.71323 1.90481 1.67711 1.35870 1.45821 1.21389 0.82452 0.95292 0.96694 1.60267 1.60393 1.07418 1.00039 1.21715 0.97475 0.98725 0.89678 1.20558 0.84551 0.87973 0.82667 1.90551 1.40062 1.43668 1.74603 1.42015 1.44329 1.28264 1.08471 1.19021 1.27291 1.07898 0.91479 0.92184 1.26043 0.99570 0.99788 0.95596 1.69791 1.45452 1.34740 1.07167 0.85432 0.78775 0.78409 0.79353 1.18004 1.19774 1.16064 1.21585 1.02389 0.90232 0.99397 1.22074 1.03372 0.97621 0.94207 1.21146 1.00779 0.94404 0.94559 1.21772 1.00488 0.98369 0.99345 1.21628 0.99818 0.94048 0.99446 1.21630 1.02995 1.00127 0.89433 0.91166 0.92174 0.85962 0.82205 0.92456 0.86593 0.77709 0.91059 0.88990 0.92021 0.89435 0.91144 0.90244 0.91784 0.92177 0.93605 0.93554 0.89375 0.90680 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.37 -9.36 9.73 -51.44 -0.50 -9.86 16 3 C 0.44 11.13 4.18 71.24 0.30 11.43 16 4 O -0.51 -13.99 12.66 21.98 0.28 -13.71 16 5 C 0.13 3.22 0.68 2.78 0.00 3.22 16 6 N -0.65 -19.47 5.64 -477.88 -2.69 -22.16 16 7 C 0.06 1.85 5.48 85.56 0.47 2.32 16 8 C 0.46 20.80 7.82 87.66 0.69 21.48 16 9 O -0.60 -33.22 15.77 -3.08 -0.05 -33.27 16 10 N -0.59 -28.17 5.09 -306.98 -1.56 -29.74 16 11 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 12 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 13 C -0.01 -0.60 5.50 84.92 0.47 -0.14 16 14 N -0.93 -55.94 13.96 21.66 0.30 -55.64 16 15 Si 0.96 39.07 27.74 68.60 1.90 40.98 16 16 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.24 -8.30 6.52 99.48 0.65 -7.65 16 19 C -0.10 -2.16 4.36 30.59 0.13 -2.02 16 20 C -0.14 -2.63 4.91 30.59 0.15 -2.48 16 21 C -0.09 -1.45 2.72 -10.80 -0.03 -1.48 16 22 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 23 C -0.11 -1.86 4.98 30.59 0.15 -1.71 16 24 C -0.10 -2.02 4.97 30.59 0.15 -1.87 16 25 H 0.07 1.18 8.13 -2.38 -0.02 1.16 16 26 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 27 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.36 11.49 8.12 -89.69 -0.73 10.77 16 29 H 0.06 1.76 6.72 -2.39 -0.02 1.75 16 30 H 0.12 3.32 6.36 -2.39 -0.02 3.30 16 31 H 0.39 15.63 5.76 -92.71 -0.53 15.09 16 32 H 0.28 15.35 8.31 -92.71 -0.77 14.57 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.42 6.44 -2.38 -0.02 1.41 16 35 H 0.09 2.06 4.94 -3.11 -0.02 2.04 16 36 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.05 0.90 7.01 -2.39 -0.02 0.88 16 42 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -73.46 345.54 2.57 -70.89 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.30 Total: 41.71 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 5.19 Total: 10.78 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.95 Total: -107.53 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -0.27 Total: -56.84 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.98 kcal Total: -73.46 2.57 -70.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118863248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.586 kcal (2) G-P(sol) polarization free energy of solvation -73.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds