Wall clock time and date at job start Fri Apr 10 2020 17:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40482 * 120.15529 * 2 1 4 4 C 1.34954 * 120.29846 * 179.97438 * 3 2 1 5 5 N 1.36478 * 120.61242 * 359.97117 * 4 3 2 6 6 C 1.36833 * 132.57128 * 179.97438 * 5 4 3 7 7 C 1.50705 * 126.40831 * 0.02562 * 6 5 4 8 8 N 1.46901 * 109.47086 * 275.00291 * 7 6 5 9 9 C 1.46905 * 111.00064 * 169.99740 * 8 7 6 10 10 C 1.50700 * 109.47230 * 284.31024 * 9 8 7 11 11 H 1.08002 * 119.99735 * 4.65984 * 10 9 8 12 12 C 1.37869 * 120.00206 * 184.65762 * 10 9 8 13 13 N 1.31517 * 119.99965 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47269 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47138 * 120.00347 * 14 12 10 17 17 H 1.48500 * 109.47665 * 240.00374 * 14 12 10 18 18 C 1.46894 * 110.99920 * 293.95084 * 8 7 6 19 19 C 1.53005 * 109.47169 * 164.03647 * 18 8 7 20 20 C 1.47192 * 109.47230 * 179.44043 * 19 18 8 21 21 N 8.70522 * 142.53056 * 252.68529 * 2 1 3 22 22 C 1.35099 * 107.18569 * 180.02562 * 6 5 4 23 23 N 1.33517 * 108.62285 * 359.97438 * 22 6 5 24 24 C 1.32556 * 109.16276 * 0.02562 * 23 22 6 25 25 C 1.36021 * 120.15456 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47042 * 90.00045 * 1 2 3 27 27 H 1.08992 * 109.47000 * 210.00351 * 1 2 3 28 28 H 1.09000 * 109.46965 * 330.00613 * 1 2 3 29 29 H 1.08000 * 119.84793 * 0.26246 * 3 2 1 30 30 H 1.08003 * 119.69024 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.46902 * 35.00101 * 7 6 5 32 32 H 1.08998 * 109.47563 * 155.00207 * 7 6 5 33 33 H 1.09002 * 109.46686 * 44.31117 * 9 8 7 34 34 H 1.08997 * 109.46844 * 164.30835 * 9 8 7 35 35 H 0.97007 * 120.00246 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.47586 * 284.03522 * 18 8 7 37 37 H 1.09005 * 109.47210 * 44.03719 * 18 8 7 38 38 H 1.09000 * 109.46524 * 299.43675 * 19 18 8 39 39 H 1.08994 * 109.47175 * 59.43630 * 19 18 8 40 40 H 1.07999 * 125.69331 * 179.97438 * 22 6 5 41 41 H 1.08002 * 120.33753 * 0.04024 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2147 0.0000 4 6 3.5622 1.2181 0.0005 5 7 4.2601 0.0452 0.0016 6 6 5.5995 -0.2349 0.0019 7 6 6.7234 0.7691 0.0015 8 7 7.0082 1.1847 -1.3784 9 6 7.9279 2.3299 -1.4041 10 6 7.1813 3.5824 -1.0237 11 1 6.1485 3.5223 -0.7137 12 6 7.8167 4.8051 -1.0712 13 7 9.0743 4.8783 -1.4490 14 14 6.8911 6.3577 -0.6002 15 1 5.5003 6.0074 -0.2153 16 1 7.5718 7.0114 0.5464 17 1 6.8654 7.2889 -1.7568 18 6 7.5399 0.0647 -2.1663 19 6 7.4510 0.4017 -3.6562 20 6 7.9961 -0.7149 -4.4452 21 7 8.4161 -1.5761 -5.0557 22 6 5.7259 -1.5800 0.0026 23 7 4.5061 -2.1229 0.0034 24 6 3.5995 -1.1559 0.0026 25 6 2.1903 -1.1761 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.6728 2.1500 0.0043 30 1 4.0948 2.1576 0.0009 31 1 6.4334 1.6392 0.5905 32 1 7.6148 0.3169 0.4361 33 1 8.7387 2.1607 -0.6955 34 1 8.3396 2.4427 -2.4070 35 1 9.5213 5.7386 -1.4828 36 1 8.5811 -0.1088 -1.8946 37 1 6.9565 -0.8330 -1.9615 38 1 6.4087 0.5654 -3.9300 39 1 8.0262 1.3050 -3.8593 40 1 6.6582 -2.1253 0.0026 41 1 1.6583 -2.1161 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152848536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:05 Heat of formation + Delta-G solvation = 112.628450 kcal Electronic energy + Delta-G solvation = -23482.417390 eV Core-core repulsion = 20170.553595 eV Total energy + Delta-G solvation = -3311.863795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.149 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.61972 -37.94137 -37.28393 -36.07601 -34.02405 -32.82824 -31.67193 -30.40100 -29.75327 -28.06157 -26.47657 -24.84405 -23.41436 -23.14713 -21.37279 -21.00344 -20.09264 -17.43188 -17.05116 -16.67139 -16.56951 -15.80470 -15.21877 -15.06405 -14.74026 -14.52644 -14.16602 -14.02809 -13.79441 -13.55789 -13.40673 -12.84239 -12.72574 -12.49230 -12.21413 -12.15640 -12.06721 -11.77750 -11.57215 -11.44241 -11.28092 -11.08476 -10.97082 -10.77220 -10.48449 -10.45298 -9.98054 -9.77298 -9.41950 -8.63126 -8.57601 -7.63415 -7.43425 -6.17464 -4.19951 0.90057 1.40544 2.80868 2.94639 3.03169 3.05953 3.20363 3.29171 3.30190 3.65095 4.16229 4.30740 4.32361 4.63987 4.79182 4.86229 4.99008 5.14265 5.19999 5.24724 5.34202 5.37323 5.41738 5.50357 5.59519 5.61216 5.71398 5.82946 5.85499 5.96330 6.12132 6.17652 6.25255 6.29975 6.37621 6.68969 6.82675 6.96889 7.12284 7.27403 7.60727 7.78229 7.85573 7.96448 8.06349 8.30617 8.85766 9.45115 10.92757 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.005613 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.996606 B = 4986.787509 C = 7058.588169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.069 4.069 3 C -0.157 4.157 4 C 0.087 3.913 5 N -0.350 5.350 6 C -0.035 4.035 7 C 0.136 3.864 8 N -0.532 5.532 9 C 0.188 3.812 10 C -0.508 4.508 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.057 3.943 19 C -0.025 4.025 20 C 0.219 3.781 21 N -0.458 5.458 22 C 0.024 3.976 23 N -0.499 5.499 24 C 0.219 3.781 25 C -0.094 4.094 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.170 0.830 31 H 0.093 0.907 32 H 0.054 0.946 33 H -0.005 1.005 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.174 0.826 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 -6.259 3.858 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.075 4.075 3 C -0.178 4.178 4 C -0.035 4.035 5 N -0.022 5.022 6 C -0.149 4.149 7 C 0.008 3.992 8 N -0.256 5.256 9 C 0.063 3.937 10 C -0.547 4.547 11 H 0.079 0.921 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.073 4.073 19 C -0.066 4.066 20 C -0.098 4.098 21 N -0.135 5.135 22 C -0.128 4.128 23 N -0.219 5.219 24 C -0.024 4.024 25 C -0.114 4.114 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.165 0.835 30 H 0.187 0.813 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.013 0.987 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.191 0.809 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.717 -8.072 2.701 15.303 hybrid contribution 0.511 1.977 0.732 2.169 sum -12.206 -6.095 3.433 14.068 Atomic orbital electron populations 1.20736 0.90124 1.03027 1.02654 1.19696 0.96653 0.92186 0.98922 1.20660 0.92195 0.99001 1.05932 1.21816 0.92834 0.89597 0.99264 1.42631 1.07081 1.07206 1.45313 1.21426 0.82644 0.96687 1.14112 1.20346 0.91740 0.95307 0.91839 1.62095 1.47945 1.05989 1.09617 1.19888 0.89773 0.86378 0.97630 1.21072 0.98038 0.90645 1.44898 0.92133 1.24957 0.94884 0.99112 0.95382 1.69944 1.10439 1.25373 1.47602 0.86500 0.79857 0.83213 0.78154 1.19748 1.21122 1.20977 1.21932 0.98590 0.95440 0.91322 1.19338 1.02893 0.91527 0.92799 1.29430 0.92779 0.94194 0.93402 1.81162 1.10338 1.11515 1.10522 1.22220 0.96203 0.90360 1.03972 1.70689 0.98812 1.29235 1.23125 1.20825 0.94214 0.80703 1.06701 1.19955 0.88329 0.99136 1.04027 0.90787 0.91298 0.91164 0.83523 0.81256 0.88916 0.92850 0.98705 0.94135 0.92801 0.94532 0.90938 0.87088 0.86540 0.80888 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.02 36.01 0.36 -0.41 16 2 C -0.07 -0.72 5.88 -104.57 -0.62 -1.34 16 3 C -0.16 -1.72 9.67 -39.90 -0.39 -2.10 16 4 C 0.09 1.17 10.85 -16.65 -0.18 0.99 16 5 N -0.35 -5.36 2.94 -58.46 -0.17 -5.53 16 6 C -0.03 -0.54 5.82 -81.47 -0.47 -1.02 16 7 C 0.14 2.22 5.22 -4.97 -0.03 2.19 16 8 N -0.53 -9.33 4.37 -237.51 -1.04 -10.37 16 9 C 0.19 4.08 4.59 -4.97 -0.02 4.06 16 10 C -0.51 -12.26 8.61 -34.44 -0.30 -12.55 16 11 H 0.06 1.42 7.66 -52.49 -0.40 1.02 16 12 C 0.06 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.89 -24.18 13.29 55.43 0.74 -23.44 16 14 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.06 0.87 4.78 -3.82 -0.02 0.85 16 19 C -0.03 -0.36 5.77 -29.52 -0.17 -0.53 16 20 C 0.22 3.36 15.43 -20.76 -0.32 3.04 16 21 N -0.46 -7.98 18.54 42.16 0.78 -7.20 16 22 C 0.02 0.37 10.34 -17.94 -0.19 0.18 16 23 N -0.50 -8.35 11.32 -12.78 -0.14 -8.50 16 24 C 0.22 3.40 7.81 -156.04 -1.22 2.18 16 25 C -0.09 -1.17 9.75 -39.36 -0.38 -1.56 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 31 H 0.09 1.61 7.32 -51.93 -0.38 1.23 16 32 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 33 H 0.00 -0.12 8.00 -51.93 -0.42 -0.53 16 34 H 0.04 0.93 6.24 -51.93 -0.32 0.61 16 35 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.04 0.56 8.05 -51.93 -0.42 0.14 16 37 H 0.07 1.07 5.83 -51.93 -0.30 0.77 16 38 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.12 1.71 6.52 -51.93 -0.34 1.38 16 40 H 0.17 2.26 8.06 -52.49 -0.42 1.83 16 41 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -29.72 352.09 -9.10 -38.82 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.51 Total: 0.94 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -4.03 Total: -4.62 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.16 Total: -55.04 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.72 -9.10 -38.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152848536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.447 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds