Wall clock time and date at job start Fri Apr 10 2020 17:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40482 * 120.15529 * 2 1 4 4 C 1.34954 * 120.29846 * 179.97438 * 3 2 1 5 5 N 1.36478 * 120.61242 * 359.97117 * 4 3 2 6 6 C 1.36833 * 132.57128 * 179.97438 * 5 4 3 7 7 C 1.50705 * 126.40831 * 0.02562 * 6 5 4 8 8 N 1.46901 * 109.47086 * 275.00291 * 7 6 5 9 9 C 1.46905 * 111.00064 * 169.99740 * 8 7 6 10 10 C 1.50700 * 109.47230 * 284.31024 * 9 8 7 11 11 H 1.08002 * 119.99735 * 4.65984 * 10 9 8 12 12 C 1.37869 * 120.00206 * 184.65762 * 10 9 8 13 13 N 1.31517 * 119.99965 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47269 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47138 * 120.00347 * 14 12 10 17 17 H 1.48500 * 109.47665 * 240.00374 * 14 12 10 18 18 C 1.46894 * 110.99920 * 293.95084 * 8 7 6 19 19 C 1.53005 * 109.47169 * 164.03647 * 18 8 7 20 20 C 1.47192 * 109.47230 * 179.44043 * 19 18 8 21 21 N 8.70522 * 142.53056 * 252.68529 * 2 1 3 22 22 C 1.35099 * 107.18569 * 180.02562 * 6 5 4 23 23 N 1.33517 * 108.62285 * 359.97438 * 22 6 5 24 24 C 1.32556 * 109.16276 * 0.02562 * 23 22 6 25 25 C 1.36021 * 120.15456 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47042 * 90.00045 * 1 2 3 27 27 H 1.08992 * 109.47000 * 210.00351 * 1 2 3 28 28 H 1.09000 * 109.46965 * 330.00613 * 1 2 3 29 29 H 1.08000 * 119.84793 * 0.26246 * 3 2 1 30 30 H 1.08003 * 119.69024 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.46902 * 35.00101 * 7 6 5 32 32 H 1.08998 * 109.47563 * 155.00207 * 7 6 5 33 33 H 1.09002 * 109.46686 * 44.31117 * 9 8 7 34 34 H 1.08997 * 109.46844 * 164.30835 * 9 8 7 35 35 H 0.97007 * 120.00246 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.47586 * 284.03522 * 18 8 7 37 37 H 1.09005 * 109.47210 * 44.03719 * 18 8 7 38 38 H 1.09000 * 109.46524 * 299.43675 * 19 18 8 39 39 H 1.08994 * 109.47175 * 59.43630 * 19 18 8 40 40 H 1.07999 * 125.69331 * 179.97438 * 22 6 5 41 41 H 1.08002 * 120.33753 * 0.04024 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2147 0.0000 4 6 3.5622 1.2181 0.0005 5 7 4.2601 0.0452 0.0016 6 6 5.5995 -0.2349 0.0019 7 6 6.7234 0.7691 0.0015 8 7 7.0082 1.1847 -1.3784 9 6 7.9279 2.3299 -1.4041 10 6 7.1813 3.5824 -1.0237 11 1 6.1485 3.5223 -0.7137 12 6 7.8167 4.8051 -1.0712 13 7 9.0743 4.8783 -1.4490 14 14 6.8911 6.3577 -0.6002 15 1 5.5003 6.0074 -0.2153 16 1 7.5718 7.0114 0.5464 17 1 6.8654 7.2889 -1.7568 18 6 7.5399 0.0647 -2.1663 19 6 7.4510 0.4017 -3.6562 20 6 7.9961 -0.7149 -4.4452 21 7 8.4161 -1.5761 -5.0557 22 6 5.7259 -1.5800 0.0026 23 7 4.5061 -2.1229 0.0034 24 6 3.5995 -1.1559 0.0026 25 6 2.1903 -1.1761 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.6728 2.1500 0.0043 30 1 4.0948 2.1576 0.0009 31 1 6.4334 1.6392 0.5905 32 1 7.6148 0.3169 0.4361 33 1 8.7387 2.1607 -0.6955 34 1 8.3396 2.4427 -2.4070 35 1 9.5213 5.7386 -1.4828 36 1 8.5811 -0.1088 -1.8946 37 1 6.9565 -0.8330 -1.9615 38 1 6.4087 0.5654 -3.9300 39 1 8.0262 1.3050 -3.8593 40 1 6.6582 -2.1253 0.0026 41 1 1.6583 -2.1161 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152848536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:04 Heat of formation + Delta-G solvation = 97.032505 kcal Electronic energy + Delta-G solvation = -23483.093681 eV Core-core repulsion = 20170.553595 eV Total energy + Delta-G solvation = -3312.540086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.71439 -39.15501 -38.42850 -37.43585 -35.04631 -34.67953 -32.86026 -31.62606 -30.78677 -29.33768 -27.85533 -26.02896 -24.83668 -24.36065 -22.50260 -22.14960 -21.41516 -18.72409 -18.40366 -18.17891 -17.58735 -17.07656 -16.59753 -16.15291 -16.06497 -15.86202 -15.42260 -15.31548 -15.06415 -14.56394 -14.28015 -14.17241 -13.98508 -13.78679 -13.47552 -13.39389 -13.19488 -12.98538 -12.82311 -12.65884 -12.55886 -12.45490 -12.40837 -12.25910 -12.04353 -11.56385 -11.36448 -11.20786 -10.98133 -10.51180 -9.69495 -9.07449 -8.56551 -8.10740 -6.18268 -0.06721 0.37431 1.46993 1.50174 1.59527 1.68530 1.74725 1.76668 1.91755 2.47136 2.62857 2.90329 3.23642 3.33056 3.57351 3.69962 3.84199 3.95190 4.10052 4.15917 4.20726 4.32382 4.39429 4.54977 4.59500 4.69377 4.76000 4.88721 4.91810 4.93603 4.99826 5.05411 5.18530 5.27052 5.33959 5.39132 5.47741 5.70117 5.73671 5.75765 6.13596 6.21100 6.32584 6.53136 6.60568 6.93262 6.96233 7.50804 8.99393 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.005613 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.996606 B = 4986.787509 C = 7058.588169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.053 4.053 3 C -0.140 4.140 4 C 0.057 3.943 5 N -0.355 5.355 6 C -0.052 4.052 7 C 0.145 3.855 8 N -0.529 5.529 9 C 0.201 3.799 10 C -0.508 4.508 11 H 0.065 0.935 12 C 0.007 3.993 13 N -0.933 5.933 14 Si 0.955 3.045 15 H -0.257 1.257 16 H -0.289 1.289 17 H -0.286 1.286 18 C 0.060 3.940 19 C -0.014 4.014 20 C 0.242 3.758 21 N -0.491 5.491 22 C 0.021 3.979 23 N -0.532 5.532 24 C 0.208 3.792 25 C -0.115 4.115 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.179 0.821 30 H 0.165 0.835 31 H 0.077 0.923 32 H 0.059 0.941 33 H -0.030 1.030 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.189 0.811 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.916 -5.896 4.125 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.059 4.059 3 C -0.160 4.160 4 C -0.065 4.065 5 N -0.027 5.027 6 C -0.165 4.165 7 C 0.017 3.983 8 N -0.254 5.254 9 C 0.075 3.925 10 C -0.547 4.547 11 H 0.083 0.917 12 C -0.191 4.191 13 N -0.574 5.574 14 Si 0.781 3.219 15 H -0.181 1.181 16 H -0.215 1.215 17 H -0.212 1.212 18 C -0.070 4.070 19 C -0.055 4.055 20 C -0.074 4.074 21 N -0.169 5.169 22 C -0.130 4.130 23 N -0.252 5.252 24 C -0.035 4.035 25 C -0.135 4.135 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.197 0.803 30 H 0.183 0.817 31 H 0.096 0.904 32 H 0.077 0.923 33 H -0.012 1.012 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.206 0.794 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.684 -7.718 2.975 17.731 hybrid contribution 1.285 1.850 0.683 2.354 sum -14.399 -5.868 3.658 15.974 Atomic orbital electron populations 1.20848 0.87110 1.04568 1.03866 1.20153 0.98625 0.91160 0.95934 1.21147 0.91316 1.00656 1.02911 1.22051 0.93920 0.88998 1.01496 1.42719 1.06952 1.07768 1.45251 1.21186 0.82817 0.96407 1.16132 1.20182 0.92420 0.94979 0.90735 1.61988 1.46613 1.05922 1.10855 1.19571 0.89446 0.87489 0.95966 1.21422 0.98250 0.91438 1.43558 0.91651 1.25718 0.95537 1.02163 0.95655 1.70064 1.12008 1.25879 1.49414 0.85546 0.79382 0.79556 0.77406 1.18080 1.21497 1.21212 1.21933 0.98632 0.94834 0.91562 1.19278 1.03559 0.90771 0.91847 1.29452 0.91768 0.93619 0.92608 1.81187 1.11519 1.12581 1.11658 1.22487 0.96620 0.90443 1.03427 1.70673 0.99432 1.30120 1.25021 1.21356 0.95344 0.80559 1.06234 1.20303 0.87179 1.00823 1.05169 0.89505 0.90095 0.89406 0.80331 0.81748 0.90429 0.92287 1.01242 0.95402 0.93029 0.94548 0.90078 0.85660 0.86905 0.79436 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.02 71.24 0.71 -0.33 16 2 C -0.05 -0.93 5.88 -19.83 -0.12 -1.05 16 3 C -0.14 -2.64 9.67 22.06 0.21 -2.43 16 4 C 0.06 1.47 10.85 83.21 0.90 2.37 16 5 N -0.36 -10.67 2.94 -338.88 -1.00 -11.67 16 6 C -0.05 -1.61 5.82 41.06 0.24 -1.38 16 7 C 0.15 4.77 5.22 85.56 0.45 5.22 16 8 N -0.53 -18.61 4.37 -905.34 -3.96 -22.57 16 9 C 0.20 8.88 4.59 85.56 0.39 9.28 16 10 C -0.51 -24.56 8.61 25.60 0.22 -24.34 16 11 H 0.07 3.04 7.66 -2.91 -0.02 3.02 16 12 C 0.01 0.38 5.46 84.65 0.46 0.84 16 13 N -0.93 -51.21 13.29 21.44 0.28 -50.92 16 14 Si 0.95 39.96 29.54 68.60 2.03 41.99 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 16 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 18 C 0.06 1.81 4.78 86.31 0.41 2.22 16 19 C -0.01 -0.39 5.77 28.79 0.17 -0.23 16 20 C 0.24 7.25 15.43 89.44 1.38 8.63 16 21 N -0.49 -16.90 18.54 20.01 0.37 -16.52 16 22 C 0.02 0.66 10.34 83.71 0.87 1.53 16 23 N -0.53 -17.70 11.32 -194.35 -2.20 -19.90 16 24 C 0.21 6.31 7.81 134.10 1.05 7.35 16 25 C -0.11 -2.62 9.75 22.41 0.22 -2.41 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 28 H 0.09 0.61 8.10 -2.39 -0.02 0.59 16 29 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 31 H 0.08 2.75 7.32 -2.39 -0.02 2.74 16 32 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 33 H -0.03 -1.47 8.00 -2.39 -0.02 -1.49 16 34 H 0.03 1.31 6.24 -2.39 -0.01 1.29 16 35 H 0.26 13.72 8.31 -92.70 -0.77 12.95 16 36 H 0.04 1.11 8.05 -2.39 -0.02 1.09 16 37 H 0.08 2.35 5.83 -2.38 -0.01 2.34 16 38 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.11 3.29 6.52 -2.39 -0.02 3.27 16 40 H 0.19 4.87 8.06 -2.91 -0.02 4.84 16 41 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -64.21 352.09 4.13 -60.08 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.04 Total: 14.25 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 7.57 Total: 5.27 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -6.50 Total: -121.58 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -64.21 4.13 -60.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152848536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.115 kcal (2) G-P(sol) polarization free energy of solvation -64.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds