Wall clock time and date at job start Fri Apr 10 2020 17:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38749 * 119.79018 * 2 1 4 4 C 1.37850 * 120.68292 * 180.02562 * 3 2 1 5 5 C 1.38938 * 119.82002 * 359.96095 * 4 3 2 6 6 O 1.34809 * 133.49476 * 180.02562 * 5 4 3 7 7 C 1.34453 * 110.88634 * 180.02562 * 6 5 4 8 8 C 1.50701 * 124.91701 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47640 * 270.02660 * 8 7 6 10 10 C 1.46901 * 111.00241 * 190.00414 * 9 8 7 11 11 C 1.50693 * 109.46912 * 169.00747 * 10 9 8 12 12 H 1.07996 * 120.00656 * 354.96262 * 11 10 9 13 13 C 1.37885 * 119.99879 * 174.95735 * 11 10 9 14 14 N 1.31514 * 119.99794 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99945 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47079 * 90.00396 * 15 13 11 17 17 H 1.48505 * 109.47352 * 210.00021 * 15 13 11 18 18 H 1.48498 * 109.47252 * 330.00222 * 15 13 11 19 19 C 1.46898 * 110.99704 * 66.04925 * 9 8 7 20 20 C 1.52998 * 109.47419 * 62.04549 * 19 9 8 21 21 C 1.47193 * 109.47689 * 179.61635 * 20 19 9 22 22 N 8.50502 * 158.40909 * 304.68244 * 2 1 3 23 23 C 1.33995 * 110.15826 * 0.02562 * 7 6 5 24 24 C 1.40493 * 119.22307 * 0.03778 * 5 4 3 25 25 C 1.36734 * 119.79420 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46948 * 269.97928 * 1 2 3 27 27 H 1.09003 * 109.46789 * 29.97948 * 1 2 3 28 28 H 1.08995 * 109.47170 * 149.97907 * 1 2 3 29 29 H 1.07996 * 119.65792 * 0.04789 * 3 2 1 30 30 H 1.08004 * 120.09116 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47067 * 30.03609 * 8 7 6 32 32 H 1.09009 * 109.46734 * 150.02807 * 8 7 6 33 33 H 1.08997 * 109.46869 * 289.00673 * 10 9 8 34 34 H 1.08991 * 109.47014 * 49.00635 * 10 9 8 35 35 H 0.97003 * 119.99627 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.47102 * 182.04399 * 19 9 8 37 37 H 1.09004 * 109.47571 * 302.04568 * 19 9 8 38 38 H 1.09005 * 109.47285 * 299.61935 * 20 19 9 39 39 H 1.09005 * 109.46826 * 59.61542 * 20 19 9 40 40 H 1.07999 * 126.90713 * 180.02562 * 23 7 6 41 41 H 1.08007 * 120.13871 * 359.95409 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2041 0.0000 4 6 3.5747 1.2256 -0.0005 5 6 4.2843 0.0311 -0.0002 6 8 5.5989 -0.2671 -0.0002 7 6 5.7885 -1.5982 -0.0004 8 6 7.1335 -2.2780 -0.0010 9 7 7.5704 -2.4982 -1.3861 10 6 8.7560 -3.3643 -1.4328 11 6 9.0137 -3.7867 -2.8562 12 1 8.3171 -3.5138 -3.6350 13 6 10.1389 -4.5217 -3.1642 14 7 10.9875 -4.8536 -2.2159 15 14 10.4579 -5.0460 -4.9285 16 1 11.2551 -4.0005 -5.6191 17 1 11.2092 -6.3269 -4.9362 18 1 9.1632 -5.2272 -5.6329 19 6 7.8239 -1.2216 -2.0673 20 6 8.9544 -0.4780 -1.3532 21 6 9.2146 0.7969 -2.0412 22 7 9.4152 1.7809 -2.5736 23 6 4.6083 -2.2327 -0.0012 24 6 3.5804 -1.1848 -0.0002 25 6 2.1864 -1.1866 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6474 2.1342 0.0008 30 1 4.1015 2.1684 -0.0001 31 1 7.8592 -1.6480 0.5133 32 1 7.0563 -3.2366 0.5124 33 1 9.6199 -2.8184 -1.0538 34 1 8.5854 -4.2472 -0.8170 35 1 11.7789 -5.3710 -2.4326 36 1 8.1109 -1.4123 -3.1014 37 1 6.9196 -0.6133 -2.0474 38 1 8.6647 -0.2813 -0.3209 39 1 9.8568 -1.0892 -1.3671 40 1 4.4459 -3.3005 -0.0012 41 1 1.6453 -2.1213 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170599883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:17 Heat of formation + Delta-G solvation = 54.433973 kcal Electronic energy + Delta-G solvation = -23094.981435 eV Core-core repulsion = 19748.301387 eV Total energy + Delta-G solvation = -3346.680048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34096 -38.44986 -37.72915 -35.94186 -33.02033 -32.65624 -32.22707 -30.89921 -29.69365 -27.58064 -26.65797 -25.37141 -23.72666 -22.20621 -21.45463 -21.00809 -19.86558 -17.55868 -17.31932 -16.51351 -16.20994 -16.01010 -15.33614 -15.10523 -14.65994 -14.37644 -14.15804 -13.90910 -13.80522 -13.66596 -13.39978 -12.99066 -12.68516 -12.36759 -12.19948 -12.15209 -12.03569 -11.78542 -11.69408 -11.63695 -11.33208 -11.18836 -10.89360 -10.81265 -10.66591 -10.29987 -10.10850 -9.92329 -9.39296 -8.55301 -8.40879 -8.05430 -7.54509 -6.14501 -4.16230 0.94858 1.33762 2.49165 2.82422 3.09156 3.12725 3.27256 3.34564 3.38466 3.67667 4.29282 4.36525 4.43233 4.70838 4.72909 4.89224 5.03646 5.18787 5.21989 5.23136 5.25919 5.40544 5.41564 5.47020 5.51441 5.61830 5.67860 5.74676 5.87368 5.91766 5.94053 6.19578 6.20490 6.27363 6.48055 6.54514 6.57246 6.72134 6.99779 7.10741 7.32987 7.62379 7.77853 7.92197 7.95680 8.31288 8.91494 9.49313 10.95703 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.003609 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.061844 B = 7755.604009 C = 8585.191642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.108 4.108 3 C -0.102 4.102 4 C -0.103 4.103 5 C 0.045 3.955 6 O -0.193 6.193 7 C 0.059 3.941 8 C 0.116 3.884 9 N -0.522 5.522 10 C 0.186 3.814 11 C -0.511 4.511 12 H 0.065 0.935 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.071 3.929 20 C -0.073 4.073 21 C 0.226 3.774 22 N -0.460 5.460 23 C -0.198 4.198 24 C -0.120 4.120 25 C -0.075 4.075 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.009 0.991 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.158 0.842 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.051 7.282 8.047 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.109 4.109 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.002 4.002 6 O -0.095 6.095 7 C 0.011 3.989 8 C -0.012 4.012 9 N -0.245 5.245 10 C 0.062 3.938 11 C -0.550 4.550 12 H 0.083 0.917 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.059 4.059 20 C -0.115 4.115 21 C -0.092 4.092 22 N -0.138 5.138 23 C -0.218 4.218 24 C -0.121 4.121 25 C -0.093 4.093 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.176 0.824 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.740 8.573 7.032 19.253 hybrid contribution 0.849 -0.461 -0.305 1.013 sum -14.891 8.112 6.727 18.243 Atomic orbital electron populations 1.20729 0.90949 1.02712 1.02146 1.19464 0.96172 0.92771 1.02461 1.20723 0.92449 0.97814 1.00976 1.19895 0.93101 0.94715 1.04414 1.19606 0.81550 0.95558 1.03530 1.83985 1.24262 1.25049 1.76214 1.22520 0.97714 0.79290 0.99370 1.20829 0.87964 0.98902 0.93462 1.62487 1.38382 1.12653 1.10973 1.19916 0.84284 0.91072 0.98522 1.21092 1.06808 1.33866 0.93205 0.91651 1.24943 0.95910 0.95973 0.97440 1.69931 1.12600 1.38740 1.32264 0.86530 0.78430 0.78019 0.84701 1.20704 1.21237 1.19689 1.22077 0.94531 0.89261 1.00079 1.20204 1.04743 0.87342 0.99178 1.29213 0.92398 0.94302 0.93248 1.81156 1.09952 1.12594 1.10109 1.22191 0.89867 0.99488 1.10295 1.19986 0.94346 0.92996 1.04739 1.20122 0.91502 0.97959 0.99694 0.91390 0.91639 0.91595 0.85213 0.85345 0.92915 0.87386 0.97340 0.94813 0.92765 0.88669 0.91744 0.88257 0.85873 0.82422 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.00 36.00 0.36 -0.43 16 2 C -0.11 -1.13 5.85 -104.98 -0.61 -1.74 16 3 C -0.10 -1.05 9.66 -39.53 -0.38 -1.43 16 4 C -0.10 -1.24 10.07 -39.46 -0.40 -1.64 16 5 C 0.05 0.66 7.42 -38.47 -0.29 0.37 16 6 O -0.19 -2.98 9.88 3.90 0.04 -2.94 16 7 C 0.06 0.88 5.81 -35.80 -0.21 0.67 16 8 C 0.12 1.72 5.26 -4.98 -0.03 1.69 16 9 N -0.52 -9.44 4.69 -237.52 -1.11 -10.55 16 10 C 0.19 4.06 4.53 -4.98 -0.02 4.04 16 11 C -0.51 -12.86 8.40 -34.44 -0.29 -13.14 16 12 H 0.07 1.66 7.37 -52.49 -0.39 1.28 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -24.45 13.29 55.43 0.74 -23.72 16 15 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.07 1.21 4.94 -3.83 -0.02 1.19 16 20 C -0.07 -1.11 5.05 -29.52 -0.15 -1.26 16 21 C 0.23 3.80 15.44 -20.74 -0.32 3.48 16 22 N -0.46 -8.63 18.54 42.18 0.78 -7.85 16 23 C -0.20 -2.84 11.01 -37.62 -0.41 -3.25 16 24 C -0.12 -1.69 6.40 -105.16 -0.67 -2.36 16 25 C -0.07 -0.89 9.68 -39.69 -0.38 -1.27 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.05 0.71 6.07 -51.93 -0.32 0.39 16 32 H 0.11 1.48 7.92 -51.92 -0.41 1.07 16 33 H 0.01 0.20 6.01 -51.93 -0.31 -0.11 16 34 H 0.03 0.79 7.91 -51.93 -0.41 0.37 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.09 1.80 6.98 -51.93 -0.36 1.44 16 37 H 0.06 1.08 6.67 -51.93 -0.35 0.73 16 38 H 0.10 1.31 6.34 -51.93 -0.33 0.98 16 39 H 0.12 2.03 6.28 -51.93 -0.33 1.70 16 40 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -29.17 348.60 -8.53 -37.70 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.29 Total: 0.20 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -3.92 Total: -13.64 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.41 Total: -42.12 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.17 -8.53 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170599883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.137 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds