Wall clock time and date at job start Fri Apr 10 2020 17:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38749 * 119.79018 * 2 1 4 4 C 1.37850 * 120.68292 * 180.02562 * 3 2 1 5 5 C 1.38938 * 119.82002 * 359.96095 * 4 3 2 6 6 O 1.34809 * 133.49476 * 180.02562 * 5 4 3 7 7 C 1.34453 * 110.88634 * 180.02562 * 6 5 4 8 8 C 1.50701 * 124.91701 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47640 * 270.02660 * 8 7 6 10 10 C 1.46901 * 111.00241 * 190.00414 * 9 8 7 11 11 C 1.50693 * 109.46912 * 169.00747 * 10 9 8 12 12 H 1.07996 * 120.00656 * 354.96262 * 11 10 9 13 13 C 1.37885 * 119.99879 * 174.95735 * 11 10 9 14 14 N 1.31514 * 119.99794 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99945 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47079 * 90.00396 * 15 13 11 17 17 H 1.48505 * 109.47352 * 210.00021 * 15 13 11 18 18 H 1.48498 * 109.47252 * 330.00222 * 15 13 11 19 19 C 1.46898 * 110.99704 * 66.04925 * 9 8 7 20 20 C 1.52998 * 109.47419 * 62.04549 * 19 9 8 21 21 C 1.47193 * 109.47689 * 179.61635 * 20 19 9 22 22 N 8.50502 * 158.40909 * 304.68244 * 2 1 3 23 23 C 1.33995 * 110.15826 * 0.02562 * 7 6 5 24 24 C 1.40493 * 119.22307 * 0.03778 * 5 4 3 25 25 C 1.36734 * 119.79420 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46948 * 269.97928 * 1 2 3 27 27 H 1.09003 * 109.46789 * 29.97948 * 1 2 3 28 28 H 1.08995 * 109.47170 * 149.97907 * 1 2 3 29 29 H 1.07996 * 119.65792 * 0.04789 * 3 2 1 30 30 H 1.08004 * 120.09116 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47067 * 30.03609 * 8 7 6 32 32 H 1.09009 * 109.46734 * 150.02807 * 8 7 6 33 33 H 1.08997 * 109.46869 * 289.00673 * 10 9 8 34 34 H 1.08991 * 109.47014 * 49.00635 * 10 9 8 35 35 H 0.97003 * 119.99627 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.47102 * 182.04399 * 19 9 8 37 37 H 1.09004 * 109.47571 * 302.04568 * 19 9 8 38 38 H 1.09005 * 109.47285 * 299.61935 * 20 19 9 39 39 H 1.09005 * 109.46826 * 59.61542 * 20 19 9 40 40 H 1.07999 * 126.90713 * 180.02562 * 23 7 6 41 41 H 1.08007 * 120.13871 * 359.95409 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2041 0.0000 4 6 3.5747 1.2256 -0.0005 5 6 4.2843 0.0311 -0.0002 6 8 5.5989 -0.2671 -0.0002 7 6 5.7885 -1.5982 -0.0004 8 6 7.1335 -2.2780 -0.0010 9 7 7.5704 -2.4982 -1.3861 10 6 8.7560 -3.3643 -1.4328 11 6 9.0137 -3.7867 -2.8562 12 1 8.3171 -3.5138 -3.6350 13 6 10.1389 -4.5217 -3.1642 14 7 10.9875 -4.8536 -2.2159 15 14 10.4579 -5.0460 -4.9285 16 1 11.2551 -4.0005 -5.6191 17 1 11.2092 -6.3269 -4.9362 18 1 9.1632 -5.2272 -5.6329 19 6 7.8239 -1.2216 -2.0673 20 6 8.9544 -0.4780 -1.3532 21 6 9.2146 0.7969 -2.0412 22 7 9.4152 1.7809 -2.5736 23 6 4.6083 -2.2327 -0.0012 24 6 3.5804 -1.1848 -0.0002 25 6 2.1864 -1.1866 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6474 2.1342 0.0008 30 1 4.1015 2.1684 -0.0001 31 1 7.8592 -1.6480 0.5133 32 1 7.0563 -3.2366 0.5124 33 1 9.6199 -2.8184 -1.0538 34 1 8.5854 -4.2472 -0.8170 35 1 11.7789 -5.3710 -2.4326 36 1 8.1109 -1.4123 -3.1014 37 1 6.9196 -0.6133 -2.0474 38 1 8.6647 -0.2813 -0.3209 39 1 9.8568 -1.0892 -1.3671 40 1 4.4459 -3.3005 -0.0012 41 1 1.6453 -2.1213 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170599883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:15 Heat of formation + Delta-G solvation = 39.317905 kcal Electronic energy + Delta-G solvation = -23095.636916 eV Core-core repulsion = 19748.301387 eV Total energy + Delta-G solvation = -3347.335530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.36998 -39.56049 -38.92477 -37.38087 -34.75685 -33.87710 -33.07493 -32.10599 -31.04298 -28.91506 -27.68676 -26.61602 -25.33969 -23.26555 -22.41444 -22.19341 -21.18594 -18.97061 -18.30122 -18.23172 -17.41313 -17.19091 -16.71411 -16.19556 -16.13570 -15.73789 -15.28960 -15.17042 -14.90632 -14.61716 -14.39081 -14.26029 -13.94972 -13.72647 -13.61438 -13.33529 -13.08840 -12.96185 -12.93246 -12.77668 -12.61833 -12.54400 -12.47521 -12.35940 -11.95562 -11.77102 -11.61516 -11.28915 -10.98520 -10.53011 -9.32694 -9.11468 -8.96455 -8.13679 -6.19664 0.00380 0.41981 1.41975 1.44058 1.47402 1.55956 1.69749 1.74544 1.80127 2.45470 2.76945 2.95659 3.21189 3.37791 3.53285 3.79299 3.99418 4.07219 4.12926 4.19457 4.23149 4.31894 4.41252 4.44794 4.58814 4.69088 4.73910 4.82151 4.86895 4.91885 5.03111 5.11003 5.23249 5.30717 5.33998 5.35380 5.39025 5.55508 5.65757 5.72966 5.85257 6.10329 6.21788 6.32190 6.52756 6.58588 6.95135 7.48915 8.95653 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.003609 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.061844 B = 7755.604009 C = 8585.191642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.095 4.095 4 C -0.116 4.116 5 C 0.017 3.983 6 O -0.206 6.206 7 C 0.044 3.956 8 C 0.120 3.880 9 N -0.530 5.530 10 C 0.199 3.801 11 C -0.517 4.517 12 H 0.057 0.943 13 C 0.014 3.986 14 N -0.925 5.925 15 Si 0.948 3.052 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.078 3.922 20 C -0.060 4.060 21 C 0.244 3.756 22 N -0.492 5.492 23 C -0.201 4.201 24 C -0.142 4.142 25 C -0.087 4.087 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.004 0.996 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.167 0.833 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 8.132 8.368 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C -0.112 4.112 4 C -0.134 4.134 5 C -0.030 4.030 6 O -0.108 6.108 7 C -0.004 4.004 8 C -0.007 4.007 9 N -0.253 5.253 10 C 0.074 3.926 11 C -0.556 4.556 12 H 0.076 0.924 13 C -0.185 4.185 14 N -0.566 5.566 15 Si 0.775 3.225 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.194 1.194 19 C -0.053 4.053 20 C -0.102 4.102 21 C -0.073 4.073 22 N -0.170 5.170 23 C -0.221 4.221 24 C -0.143 4.143 25 C -0.105 4.105 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.180 0.820 30 H 0.160 0.840 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.022 0.978 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.185 0.815 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.788 9.431 7.353 21.434 hybrid contribution 1.299 -0.669 -0.369 1.507 sum -16.488 8.762 6.984 19.935 Atomic orbital electron populations 1.20801 0.88426 1.03843 1.03304 1.19914 0.98010 0.92224 1.00531 1.21183 0.91896 0.99260 0.98906 1.20253 0.93998 0.94562 1.04607 1.20068 0.81318 0.96726 1.04878 1.83926 1.25049 1.25109 1.76760 1.22395 0.97622 0.79468 1.00900 1.20826 0.88473 0.99924 0.91510 1.62300 1.36590 1.12898 1.13483 1.19581 0.85495 0.91131 0.96352 1.21407 1.06305 1.33157 0.94686 0.92448 1.25590 0.96055 0.96368 1.00467 1.70014 1.13090 1.39760 1.33726 0.85695 0.78180 0.77552 0.81076 1.20626 1.21073 1.19433 1.21923 0.95290 0.89088 0.98964 1.20137 1.03630 0.86188 1.00208 1.29358 0.91438 0.94076 0.92429 1.81169 1.10987 1.13726 1.11146 1.22444 0.90111 1.00145 1.09428 1.20227 0.95385 0.92766 1.05942 1.20435 0.90818 0.99477 0.99800 0.90079 0.90095 0.90971 0.81971 0.84041 0.91303 0.86479 0.97835 0.96316 0.92836 0.90932 0.91201 0.85556 0.86690 0.81502 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.00 71.24 0.71 -0.47 16 2 C -0.11 -1.94 5.85 -20.10 -0.12 -2.06 16 3 C -0.09 -1.69 9.66 22.30 0.22 -1.48 16 4 C -0.12 -2.63 10.07 22.35 0.23 -2.40 16 5 C 0.02 0.49 7.42 22.99 0.17 0.66 16 6 O -0.21 -6.28 9.88 -8.97 -0.09 -6.36 16 7 C 0.04 1.28 5.81 24.72 0.14 1.43 16 8 C 0.12 3.47 5.26 85.56 0.45 3.92 16 9 N -0.53 -19.11 4.69 -905.39 -4.24 -23.35 16 10 C 0.20 8.78 4.53 85.55 0.39 9.17 16 11 C -0.52 -26.21 8.40 25.60 0.21 -26.00 16 12 H 0.06 2.95 7.37 -2.91 -0.02 2.93 16 13 C 0.01 0.74 5.46 84.66 0.46 1.20 16 14 N -0.93 -50.85 13.29 21.45 0.28 -50.57 16 15 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 C 0.08 2.64 4.94 86.30 0.43 3.06 16 20 C -0.06 -1.79 5.05 28.79 0.15 -1.65 16 21 C 0.24 8.06 15.44 89.43 1.38 9.44 16 22 N -0.49 -18.26 18.54 20.01 0.37 -17.89 16 23 C -0.20 -5.70 11.01 23.54 0.26 -5.44 16 24 C -0.14 -3.93 6.40 -20.21 -0.13 -4.06 16 25 C -0.09 -1.94 9.68 22.20 0.21 -1.72 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 28 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 29 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.07 1.76 6.07 -2.39 -0.01 1.75 16 32 H 0.12 3.15 7.92 -2.38 -0.02 3.13 16 33 H 0.00 0.18 6.01 -2.39 -0.01 0.16 16 34 H 0.02 0.88 7.91 -2.39 -0.02 0.86 16 35 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 36 H 0.07 2.79 6.98 -2.39 -0.02 2.77 16 37 H 0.07 2.32 6.67 -2.38 -0.02 2.30 16 38 H 0.13 3.12 6.34 -2.38 -0.02 3.10 16 39 H 0.12 3.74 6.28 -2.38 -0.01 3.73 16 40 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 41 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -62.46 348.60 4.56 -57.90 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.05 Total: 12.34 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 5.16 Total: -16.41 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -3.59 Total: -91.81 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.09 Total: -6.36 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -62.46 4.56 -57.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170599883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.214 kcal (2) G-P(sol) polarization free energy of solvation -62.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds