Wall clock time and date at job start Fri Apr 10 2020 17:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.38489 * 111.00087 * 123.95451 * 2 1 3 5 5 N 1.31203 * 125.79410 * 359.69492 * 4 2 1 6 6 C 1.34389 * 109.30491 * 179.83372 * 5 4 2 7 7 C 1.34374 * 108.31922 * 0.42948 * 6 5 4 8 8 C 1.50709 * 126.52787 * 179.74592 * 7 6 5 9 9 N 1.46496 * 109.47218 * 95.00022 * 8 7 6 10 10 C 1.34779 * 119.99840 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00112 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99829 * 179.97438 * 10 9 8 13 13 S 1.80997 * 109.47120 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00093 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99873 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00060 * 180.02562 * 14 13 12 17 17 N 1.31629 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47351 * 59.99071 * 18 16 14 20 20 H 1.48495 * 109.47147 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46889 * 299.99238 * 18 16 14 22 22 N 1.36034 * 125.79046 * 180.02562 * 4 2 1 23 23 C 1.46501 * 126.49231 * 0.02562 * 22 4 2 24 24 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 28 28 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 29 29 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 30 30 H 1.07994 * 125.83854 * 180.17095 * 6 5 4 31 31 H 1.08999 * 109.46698 * 214.99815 * 8 7 6 32 32 H 1.09001 * 109.46645 * 334.99692 * 8 7 6 33 33 H 0.97001 * 120.00018 * 0.02562 * 9 8 7 34 34 H 1.09007 * 109.47087 * 299.99922 * 12 10 9 35 35 H 1.09001 * 109.47006 * 59.99202 * 12 10 9 36 36 H 0.97007 * 119.99564 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47081 * 89.97859 * 23 22 4 38 38 H 1.09001 * 109.47593 * 209.97847 * 23 22 4 39 39 H 1.09002 * 109.47495 * 329.97846 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9653 -0.7221 1.0724 5 7 1.2468 -1.3306 1.9862 6 6 2.0647 -1.9309 2.8675 7 6 3.3340 -1.6844 2.5015 8 6 4.5789 -2.1588 3.2060 9 7 5.0502 -3.3983 2.5832 10 6 6.1566 -4.0092 3.0513 11 8 6.7623 -3.5327 3.9877 12 6 6.6411 -5.2846 2.4110 13 16 8.1363 -5.8542 3.2570 14 6 8.4735 -7.3154 2.3318 15 1 7.8236 -7.6012 1.5180 16 6 9.5738 -8.0996 2.6496 17 7 10.3656 -7.7514 3.6417 18 14 9.9317 -9.6482 1.6683 19 1 10.1442 -9.2926 0.2422 20 1 11.1535 -10.3015 2.2025 21 1 8.7819 -10.5815 1.7796 22 7 3.2806 -0.9157 1.3607 23 6 4.4237 -0.4029 0.6013 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7044 1.8723 0.9233 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7549 -2.5087 3.7256 31 1 5.3534 -1.3958 3.1282 32 1 4.3541 -2.3427 4.2566 33 1 4.5659 -3.7792 1.8341 34 1 5.8662 -6.0473 2.4888 35 1 6.8659 -5.1010 1.3604 36 1 11.1348 -8.2993 3.8635 37 1 4.7063 0.5765 0.9872 38 1 5.2643 -1.0895 0.7019 39 1 4.1509 -0.3142 -0.4503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265135058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:35 Heat of formation + Delta-G solvation = 42.747871 kcal Electronic energy + Delta-G solvation = -21125.189565 eV Core-core repulsion = 17809.906377 eV Total energy + Delta-G solvation = -3315.283187 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42486 -39.14618 -37.55042 -34.80315 -34.19102 -32.43541 -30.76694 -28.83493 -28.14520 -27.44901 -25.93569 -25.40753 -24.08471 -20.95278 -20.42930 -20.11021 -17.96468 -17.47806 -16.57768 -16.30728 -15.97154 -15.78892 -15.18124 -14.95663 -14.80987 -14.75321 -14.00143 -13.92300 -13.40118 -13.27807 -13.12615 -13.10299 -12.82172 -12.77610 -12.57190 -12.35355 -12.02240 -11.81110 -11.05358 -11.04187 -10.78407 -10.33769 -10.04150 -9.84062 -9.82848 -9.48513 -9.07441 -8.96854 -8.25933 -8.08706 -6.51179 -6.22273 -3.93070 1.56795 2.18447 2.72212 3.04777 3.10352 3.23312 3.27768 3.33701 3.41946 3.79207 4.19913 4.28869 4.43625 4.47614 4.74188 4.79679 4.82276 4.99718 5.04021 5.06869 5.12874 5.14627 5.16895 5.25684 5.46775 5.49178 5.54866 5.72255 5.83462 5.88261 6.09701 6.12878 6.21892 6.48652 6.55158 7.11694 7.58705 7.64740 7.79435 8.34438 8.55048 9.23007 10.85071 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.002553 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.269451 B =10963.137234 C =11208.818317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.463 5.463 3 C 0.016 3.984 4 C 0.391 3.609 5 N -0.515 5.515 6 C 0.015 3.985 7 C -0.047 4.047 8 C 0.203 3.797 9 N -0.738 5.738 10 C 0.533 3.467 11 O -0.517 6.517 12 C -0.153 4.153 13 S -0.059 6.059 14 C -0.536 4.536 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 N -0.457 5.457 23 C 0.069 3.931 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.400 0.600 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 17.905 -8.416 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.186 5.186 3 C -0.131 4.131 4 C 0.039 3.961 5 N -0.239 5.239 6 C -0.135 4.135 7 C -0.160 4.160 8 C 0.078 3.922 9 N -0.393 5.393 10 C 0.319 3.681 11 O -0.391 6.391 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.684 4.684 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.199 1.199 22 N -0.144 5.144 23 C -0.074 4.074 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.192 0.808 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.249 18.509 -7.228 26.313 hybrid contribution -0.030 -1.337 -1.583 2.072 sum -17.279 17.171 -8.811 25.905 Atomic orbital electron populations 1.22264 0.82527 1.04137 1.01315 1.58712 1.11276 1.13574 1.35007 1.22678 1.01502 0.86710 1.02237 1.21083 0.80402 1.01534 0.93073 1.70689 1.32312 1.16849 1.04076 1.22040 0.88074 1.02930 1.00440 1.21087 0.97887 1.04651 0.92337 1.19440 0.90142 0.86468 0.96126 1.46177 1.29377 1.26257 1.37487 1.20336 0.79250 0.85258 0.83216 1.90710 1.55529 1.65336 1.27485 1.23533 1.05932 0.96687 1.04213 1.85379 1.24037 1.29555 1.44290 1.22826 1.15095 1.10298 1.20228 0.90976 1.24991 0.95029 0.98176 0.95371 1.70009 1.14817 1.38317 1.27152 0.86222 0.77878 0.81587 0.79804 1.19959 1.20803 1.19913 1.45123 1.06251 1.41032 1.22041 1.22155 0.87831 1.00511 0.96858 0.90513 0.93705 0.89885 0.94135 0.90657 0.89535 0.80833 0.91041 0.88992 0.76661 0.89106 0.89300 0.92119 0.90611 0.89066 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 8.96 60.07 0.54 0.87 16 2 N -0.46 -4.00 5.02 -190.47 -0.96 -4.96 16 3 C 0.02 0.09 9.31 60.07 0.56 0.65 16 4 C 0.39 4.29 7.13 -319.61 -2.28 2.01 16 5 N -0.52 -6.44 10.27 -13.92 -0.14 -6.58 16 6 C 0.01 0.17 11.76 -17.80 -0.21 -0.04 16 7 C -0.05 -0.51 6.33 -81.33 -0.52 -1.02 16 8 C 0.20 2.36 5.76 -5.19 -0.03 2.33 16 9 N -0.74 -9.72 5.55 -61.47 -0.34 -10.06 16 10 C 0.53 9.66 7.85 -10.98 -0.09 9.57 16 11 O -0.52 -11.36 15.86 5.56 0.09 -11.27 16 12 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 13 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 14 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 15 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 18 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 N -0.46 -4.57 3.20 -120.30 -0.38 -4.96 16 23 C 0.07 0.49 9.18 59.85 0.55 1.04 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.71 7.98 -51.93 -0.41 0.30 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.39 5.21 -51.93 -0.27 0.12 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.40 4.57 8.46 -40.82 -0.35 4.22 16 34 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.08 0.42 7.77 -51.93 -0.40 0.02 16 38 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 39 H 0.09 0.55 7.47 -51.93 -0.39 0.17 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -35.53 346.03 -9.66 -45.18 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.58 Total: 0.59 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.05 Total: -0.35 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -1.09 Total: -51.90 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.53 -9.66 -45.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265135058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.930 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds