Wall clock time and date at job start Fri Apr 10 2020 17:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.38489 * 111.00087 * 123.95451 * 2 1 3 5 5 N 1.31203 * 125.79410 * 359.69492 * 4 2 1 6 6 C 1.34389 * 109.30491 * 179.83372 * 5 4 2 7 7 C 1.34374 * 108.31922 * 0.42948 * 6 5 4 8 8 C 1.50709 * 126.52787 * 179.74592 * 7 6 5 9 9 N 1.46496 * 109.47218 * 95.00022 * 8 7 6 10 10 C 1.34779 * 119.99840 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00112 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99829 * 179.97438 * 10 9 8 13 13 S 1.80997 * 109.47120 * 179.97438 * 12 10 9 14 14 C 1.76199 * 100.00093 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99873 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00060 * 180.02562 * 14 13 12 17 17 N 1.31629 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47351 * 59.99071 * 18 16 14 20 20 H 1.48495 * 109.47147 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46889 * 299.99238 * 18 16 14 22 22 N 1.36034 * 125.79046 * 180.02562 * 4 2 1 23 23 C 1.46501 * 126.49231 * 0.02562 * 22 4 2 24 24 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 25 25 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 26 26 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 28 28 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 29 29 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 30 30 H 1.07994 * 125.83854 * 180.17095 * 6 5 4 31 31 H 1.08999 * 109.46698 * 214.99815 * 8 7 6 32 32 H 1.09001 * 109.46645 * 334.99692 * 8 7 6 33 33 H 0.97001 * 120.00018 * 0.02562 * 9 8 7 34 34 H 1.09007 * 109.47087 * 299.99922 * 12 10 9 35 35 H 1.09001 * 109.47006 * 59.99202 * 12 10 9 36 36 H 0.97007 * 119.99564 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47081 * 89.97859 * 23 22 4 38 38 H 1.09001 * 109.47593 * 209.97847 * 23 22 4 39 39 H 1.09002 * 109.47495 * 329.97846 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9653 -0.7221 1.0724 5 7 1.2468 -1.3306 1.9862 6 6 2.0647 -1.9309 2.8675 7 6 3.3340 -1.6844 2.5015 8 6 4.5789 -2.1588 3.2060 9 7 5.0502 -3.3983 2.5832 10 6 6.1566 -4.0092 3.0513 11 8 6.7623 -3.5327 3.9877 12 6 6.6411 -5.2846 2.4110 13 16 8.1363 -5.8542 3.2570 14 6 8.4735 -7.3154 2.3318 15 1 7.8236 -7.6012 1.5180 16 6 9.5738 -8.0996 2.6496 17 7 10.3656 -7.7514 3.6417 18 14 9.9317 -9.6482 1.6683 19 1 10.1442 -9.2926 0.2422 20 1 11.1535 -10.3015 2.2025 21 1 8.7819 -10.5815 1.7796 22 7 3.2806 -0.9157 1.3607 23 6 4.4237 -0.4029 0.6013 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7044 1.8723 0.9233 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7549 -2.5087 3.7256 31 1 5.3534 -1.3958 3.1282 32 1 4.3541 -2.3427 4.2566 33 1 4.5659 -3.7792 1.8341 34 1 5.8662 -6.0473 2.4888 35 1 6.8659 -5.1010 1.3604 36 1 11.1348 -8.2993 3.8635 37 1 4.7063 0.5765 0.9872 38 1 5.2643 -1.0895 0.7019 39 1 4.1509 -0.3142 -0.4503 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265135058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:34 Heat of formation + Delta-G solvation = 18.202775 kcal Electronic energy + Delta-G solvation = -21126.253920 eV Core-core repulsion = 17809.906377 eV Total energy + Delta-G solvation = -3316.347543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = -0.09 seconds Orbital eigenvalues (eV) -43.22362 -40.56505 -38.21697 -35.95756 -35.02555 -34.57916 -32.01400 -30.06724 -28.69223 -28.09818 -27.69754 -26.70462 -24.83797 -21.82617 -21.75888 -20.90023 -19.84536 -18.34267 -17.84331 -17.37711 -16.95028 -16.87250 -16.78771 -16.29161 -15.84521 -15.61487 -15.47635 -14.80781 -14.71823 -14.43607 -14.28544 -13.95073 -13.78919 -13.67245 -13.31161 -13.25261 -13.16595 -12.93333 -12.86338 -12.63362 -12.54375 -11.75397 -11.23372 -11.12632 -11.02909 -10.68798 -10.59764 -10.28036 -10.20133 -8.88383 -8.65854 -8.34222 -6.12016 0.71907 1.28372 1.44011 1.44070 1.49427 1.58453 1.59254 1.91302 2.27584 2.43823 2.77142 2.99836 3.32384 3.47376 3.80908 3.85153 3.97445 4.06696 4.24714 4.26986 4.31368 4.31936 4.47551 4.51422 4.53586 4.61006 4.65449 4.72198 4.85012 4.94987 5.11128 5.30077 5.42160 5.42527 5.49078 5.76121 6.20021 6.37185 6.42957 6.98171 7.07144 7.17882 8.74610 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.002553 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.269451 B =10963.137234 C =11208.818317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.468 5.468 3 C 0.015 3.985 4 C 0.389 3.611 5 N -0.545 5.545 6 C 0.004 3.996 7 C -0.049 4.049 8 C 0.210 3.790 9 N -0.711 5.711 10 C 0.539 3.461 11 O -0.560 6.560 12 C -0.130 4.130 13 S -0.146 6.146 14 C -0.548 4.548 15 H 0.082 0.918 16 C 0.014 3.986 17 N -0.910 5.910 18 Si 0.997 3.003 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.263 1.263 22 N -0.457 5.457 23 C 0.064 3.936 24 H 0.104 0.896 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.184 0.816 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.412 0.588 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.976 18.228 -10.647 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.191 5.191 3 C -0.131 4.131 4 C 0.036 3.964 5 N -0.270 5.270 6 C -0.145 4.145 7 C -0.162 4.162 8 C 0.086 3.914 9 N -0.366 5.366 10 C 0.325 3.675 11 O -0.438 6.438 12 C -0.281 4.281 13 S 0.081 5.919 14 C -0.696 4.696 15 H 0.100 0.900 16 C -0.191 4.191 17 N -0.547 5.547 18 Si 0.819 3.181 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.188 1.188 22 N -0.144 5.144 23 C -0.077 4.077 24 H 0.123 0.877 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.201 0.799 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.248 0.752 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.391 18.861 -9.501 28.004 hybrid contribution 0.176 -1.304 -0.947 1.621 sum -18.216 17.557 -10.447 27.372 Atomic orbital electron populations 1.22290 0.82007 1.03425 1.02319 1.58845 1.11818 1.14783 1.33641 1.22793 1.02149 0.85240 1.02963 1.21436 0.80688 1.01169 0.93069 1.70679 1.33241 1.18013 1.05029 1.22317 0.88372 1.03048 1.00786 1.20845 0.97087 1.05328 0.92971 1.19419 0.90477 0.85445 0.96086 1.45909 1.27499 1.26150 1.37013 1.19986 0.80076 0.84762 0.82654 1.90704 1.57262 1.66349 1.29467 1.23373 1.02550 0.97958 1.04260 1.85529 1.29049 1.30510 1.46833 1.23171 1.15538 1.10482 1.20374 0.90016 1.26110 0.94665 1.01912 0.96414 1.70173 1.15487 1.39961 1.29053 0.85022 0.77937 0.76814 0.78340 1.18670 1.20374 1.18767 1.45251 1.06716 1.40646 1.21803 1.22364 0.86736 1.01146 0.97438 0.87750 0.94406 0.91482 0.94785 0.89805 0.87176 0.79916 0.90812 0.88992 0.75207 0.87403 0.87285 0.91977 0.88895 0.89437 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 8.96 127.69 1.14 1.76 16 2 N -0.47 -7.17 5.02 -756.52 -3.80 -10.96 16 3 C 0.02 0.14 9.31 127.69 1.19 1.33 16 4 C 0.39 7.96 7.13 260.37 1.86 9.82 16 5 N -0.54 -13.20 10.27 -197.95 -2.03 -15.23 16 6 C 0.00 0.09 11.76 83.42 0.98 1.07 16 7 C -0.05 -1.00 6.33 40.76 0.26 -0.74 16 8 C 0.21 4.60 5.76 85.64 0.49 5.10 16 9 N -0.71 -17.58 5.55 -466.78 -2.59 -20.17 16 10 C 0.54 19.10 7.85 87.66 0.69 19.78 16 11 O -0.56 -24.81 15.86 -3.02 -0.05 -24.85 16 12 C -0.13 -5.05 6.16 71.24 0.44 -4.62 16 13 S -0.15 -8.02 20.57 -56.49 -1.16 -9.19 16 14 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 15 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 16 C 0.01 0.79 5.49 84.86 0.47 1.25 16 17 N -0.91 -55.65 13.22 21.65 0.29 -55.36 16 18 Si 1.00 43.41 29.55 68.60 2.03 45.43 16 19 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 N -0.46 -8.34 3.20 -534.51 -1.71 -10.05 16 23 C 0.06 0.77 9.18 127.77 1.17 1.94 16 24 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 1.10 7.98 -2.38 -0.02 1.08 16 27 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.08 0.63 5.21 -2.39 -0.01 0.61 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.18 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.41 8.44 8.46 -92.71 -0.78 7.66 16 34 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 35 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 36 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 37 H 0.09 0.80 7.77 -2.39 -0.02 0.78 16 38 H 0.09 1.13 7.91 -2.39 -0.02 1.11 16 39 H 0.11 0.98 7.47 -2.39 -0.02 0.96 16 Total: -1.00 -78.15 346.03 0.59 -77.56 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.28 Total: 16.57 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 9.33 Total: 6.25 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -9.84 Total: -111.78 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.19 kcal Total: -78.15 0.59 -77.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265135058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.766 kcal (2) G-P(sol) polarization free energy of solvation -78.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds