Wall clock time and date at job start Fri Apr 10 2020 17:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47521 * 2 1 4 4 C 1.50694 * 109.47351 * 120.00009 * 2 1 3 5 5 H 1.08002 * 120.00043 * 119.99822 * 4 2 1 6 6 C 1.37874 * 120.00216 * 299.99756 * 4 2 1 7 7 N 1.31524 * 119.99837 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00756 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46570 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47427 * 119.99858 * 8 6 4 11 11 H 1.48495 * 109.47331 * 240.00573 * 8 6 4 12 12 N 1.46907 * 109.47151 * 240.00144 * 2 1 3 13 13 C 1.46900 * 110.99709 * 306.04422 * 12 2 1 14 14 C 1.46902 * 111.00070 * 69.99783 * 12 2 1 15 15 C 1.53002 * 109.46899 * 75.88278 * 14 12 2 16 16 H 1.09003 * 109.46864 * 300.54897 * 15 14 12 17 17 O 1.42901 * 109.47107 * 60.54734 * 15 14 12 18 18 C 1.53004 * 109.46670 * 180.54941 * 15 14 12 19 19 N 1.46496 * 109.46632 * 174.99991 * 18 15 14 20 20 C 1.34947 * 126.03674 * 124.72056 * 19 18 15 21 21 C 1.35319 * 107.74889 * 179.83773 * 20 19 18 22 22 N 1.48012 * 126.04204 * 180.15899 * 21 20 19 23 23 O 1.21797 * 120.00166 * 180.32640 * 22 21 20 24 24 O 1.21798 * 120.00308 * 0.33293 * 22 21 20 25 25 C 1.39871 * 107.91461 * 0.41981 * 21 20 19 26 26 N 1.30832 * 108.20802 * 359.73851 * 25 21 20 27 27 H 1.08999 * 109.46969 * 299.99775 * 1 2 3 28 28 H 1.08998 * 109.46990 * 60.00110 * 1 2 3 29 29 H 1.08996 * 109.47036 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99819 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47331 * 189.37191 * 13 12 2 32 32 H 1.09002 * 109.47437 * 309.37128 * 13 12 2 33 33 H 1.09002 * 109.47308 * 69.36831 * 13 12 2 34 34 H 1.08997 * 109.47089 * 315.88118 * 14 12 2 35 35 H 1.09003 * 109.46640 * 195.87900 * 14 12 2 36 36 H 0.96707 * 113.99571 * 60.00190 * 17 15 14 37 37 H 1.08996 * 109.46623 * 294.99951 * 18 15 14 38 38 H 1.09000 * 109.47025 * 55.00012 * 18 15 14 39 39 H 1.08001 * 126.12694 * 359.97438 * 20 19 18 40 40 H 1.08002 * 125.89825 * 179.72326 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6037 10 1 3.1468 -0.1873 4.8165 11 1 1.1662 -1.5866 4.8160 12 7 2.0197 -0.6925 -1.1995 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4091 15 6 2.7495 1.2552 -2.4923 16 1 2.6495 1.8848 -1.6081 17 8 4.0790 0.7355 -2.5591 18 6 2.4629 2.0856 -3.7449 19 7 3.3379 3.2605 -3.7625 20 6 4.1757 3.6115 -4.7604 21 6 4.7989 4.7551 -4.3928 22 7 5.8013 5.4959 -5.1909 23 8 6.2991 6.5157 -4.7485 24 8 6.1284 5.0859 -6.2902 25 6 4.3327 5.1099 -3.1227 26 7 3.4569 4.2148 -2.7439 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.7083 1.1609 3.4844 31 1 1.9342 -2.5866 -2.1044 32 1 1.5627 -2.5651 -0.3638 33 1 0.3717 -1.9514 -1.5356 34 1 0.7383 0.4933 -2.3680 35 1 1.8597 -0.5379 -3.2885 36 1 4.2403 0.1648 -3.3229 37 1 2.6490 1.4806 -4.6323 38 1 1.4217 2.4080 -3.7367 39 1 4.3211 3.0769 -5.6875 40 1 4.6424 5.9736 -2.5529 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268339247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:38 Heat of formation + Delta-G solvation = 39.267829 kcal Electronic energy + Delta-G solvation = -24301.766314 eV Core-core repulsion = 20543.579350 eV Total energy + Delta-G solvation = -3758.186964 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.50745 -41.43936 -38.47575 -36.52237 -36.35248 -33.77577 -32.77845 -31.45955 -30.32327 -28.79676 -27.17225 -25.63675 -25.31830 -23.86635 -22.44030 -21.77177 -21.31200 -19.39760 -19.08206 -18.50818 -17.59362 -17.03665 -16.44540 -16.33032 -15.97003 -15.33706 -14.93676 -14.77304 -14.41056 -13.93302 -13.73773 -13.63004 -12.92825 -12.62016 -12.23233 -11.91191 -11.84781 -11.57009 -11.45047 -11.21901 -11.16766 -11.15344 -10.99926 -10.90570 -10.71822 -10.59887 -10.37527 -10.16742 -10.03637 -9.84384 -9.50657 -8.97943 -8.44137 -7.29887 -6.07092 -4.10382 0.17496 1.11367 1.29019 2.02974 2.15321 3.26727 3.35112 3.39283 3.71844 4.01291 4.20272 4.25704 4.39672 4.52224 4.67735 4.80982 4.94881 5.15242 5.19031 5.25054 5.36583 5.59905 5.77702 5.98363 6.03896 6.14468 6.19506 6.35492 6.51351 6.65982 6.73246 6.84624 6.97840 7.29491 7.57523 7.66363 7.70568 7.78762 8.01156 8.25519 8.47501 8.95142 9.54873 11.00258 Molecular weight = 298.15amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.003293 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.029971 B = 8499.811396 C = 9164.719659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.524 5.524 13 C 0.036 3.964 14 C 0.024 3.976 15 C 0.103 3.897 16 H 0.121 0.879 17 O -0.533 6.533 18 C 0.090 3.910 19 N -0.329 5.329 20 C 0.153 3.847 21 C -0.198 4.198 22 N 0.073 4.927 23 O -0.168 6.168 24 O -0.183 6.183 25 C 0.110 3.890 26 N -0.251 5.251 27 H 0.090 0.910 28 H 0.005 0.995 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.014 0.986 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.363 0.637 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.202 0.798 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 2.879 -16.146 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.247 5.247 13 C -0.112 4.112 14 C -0.106 4.106 15 C 0.042 3.958 16 H 0.139 0.861 17 O -0.336 6.336 18 C -0.030 4.030 19 N -0.106 5.106 20 C -0.003 4.003 21 C -0.296 4.296 22 N 0.588 4.412 23 O -0.382 6.382 24 O -0.393 6.393 25 C -0.080 4.080 26 N -0.070 5.070 27 H 0.108 0.892 28 H 0.024 0.976 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.208 0.792 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.219 0.781 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.554 2.406 -14.087 14.302 hybrid contribution -0.022 -0.183 -0.573 0.602 sum 0.532 2.223 -14.660 14.837 Atomic orbital electron populations 1.22427 1.00919 0.99471 1.00441 1.19350 0.89507 0.94609 0.86150 0.94337 1.21096 1.30480 1.12527 0.89535 0.91904 1.24926 0.95197 0.95128 0.99061 1.69882 1.37061 1.23059 1.23389 0.86462 0.78528 0.79705 0.82859 1.19731 1.20997 1.21182 1.62251 1.58739 1.02111 1.01597 1.22228 0.95647 0.91396 1.01950 1.22609 0.96913 0.95369 0.95745 1.22331 0.83749 0.93776 0.95952 0.86116 1.86795 1.28474 1.67844 1.50484 1.23064 0.94091 0.82985 1.02905 1.48830 1.30116 1.20144 1.11556 1.22303 0.89241 0.93749 0.94995 1.21019 1.07964 1.02101 0.98500 1.42456 0.99023 0.99696 1.00001 1.94546 1.55864 1.13058 1.74716 1.94526 1.65904 1.72084 1.06747 1.24002 0.93063 0.98991 0.91941 1.77907 1.20052 0.99339 1.09717 0.89163 0.97623 0.94969 0.93015 0.93930 0.90343 0.96757 0.93774 0.91877 0.79162 0.87283 0.87330 0.78115 0.77463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 8.25 37.16 0.31 -3.61 16 2 C 0.21 4.95 2.22 -68.86 -0.15 4.80 16 3 H 0.04 1.02 6.63 -51.93 -0.34 0.67 16 4 C -0.50 -13.26 7.83 -34.44 -0.27 -13.53 16 5 H 0.06 1.70 7.17 -52.49 -0.38 1.32 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.52 -10.09 4.51 -236.28 -1.07 -11.15 16 13 C 0.04 0.64 8.48 60.06 0.51 1.15 16 14 C 0.02 0.34 4.54 -3.82 -0.02 0.32 16 15 C 0.10 1.38 3.15 -26.73 -0.08 1.30 16 16 H 0.12 2.17 6.69 -51.93 -0.35 1.82 16 17 O -0.53 -7.73 13.16 -35.23 -0.46 -8.19 16 18 C 0.09 0.79 6.15 -4.04 -0.02 0.76 16 19 N -0.33 -3.53 3.63 -61.37 -0.22 -3.75 16 20 C 0.15 1.42 11.13 -17.22 -0.19 1.23 16 21 C -0.20 -2.30 7.11 -80.38 -0.57 -2.87 16 22 N 0.07 0.97 4.45 33.75 0.15 1.12 16 23 O -0.17 -2.37 19.05 -29.46 -0.56 -2.93 16 24 O -0.18 -2.46 19.02 -29.46 -0.56 -3.02 16 25 C 0.11 1.29 11.75 -17.37 -0.20 1.09 16 26 N -0.25 -3.38 12.34 30.62 0.38 -3.00 16 27 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 28 H 0.00 0.10 6.45 -51.93 -0.34 -0.24 16 29 H 0.03 0.70 6.54 -51.93 -0.34 0.36 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.54 6.66 -51.93 -0.35 1.20 16 33 H 0.01 0.24 6.79 -51.93 -0.35 -0.11 16 34 H 0.04 0.64 6.17 -51.93 -0.32 0.32 16 35 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 36 H 0.36 3.53 9.05 45.56 0.41 3.95 16 37 H 0.11 0.51 8.07 -51.93 -0.42 0.09 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.21 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -32.70 339.19 -6.74 -39.44 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.32 Total: 2.48 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.79 Total: -7.90 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.13 Total: -41.12 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.59 Total: -14.14 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.70 -6.74 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268339247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.709 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds