Wall clock time and date at job start Fri Apr 10 2020 17:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34223 * 117.00066 * 2 1 4 4 O 1.20822 * 120.00158 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00044 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47251 * 59.99528 * 5 3 2 7 7 C 1.53001 * 109.46888 * 299.99851 * 5 3 2 8 8 C 1.52998 * 109.47477 * 179.97438 * 7 5 3 9 9 C 1.53007 * 109.46897 * 59.99555 * 8 7 5 10 10 C 1.53002 * 109.47098 * 300.00277 * 9 8 7 11 11 C 1.52994 * 109.47122 * 60.00071 * 10 9 8 12 12 C 1.53001 * 109.47126 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47073 * 59.99769 * 11 10 9 14 14 C 1.46901 * 110.99793 * 60.00150 * 13 11 10 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 11 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99721 * 22 20 18 24 24 H 1.48498 * 109.47211 * 209.99980 * 22 20 18 25 25 H 1.48505 * 109.46734 * 329.99774 * 22 20 18 26 26 H 1.08996 * 109.47633 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 300.00597 * 1 2 3 28 28 H 1.08999 * 109.47021 * 60.00304 * 1 2 3 29 29 H 1.08997 * 109.47727 * 59.99867 * 7 5 3 30 30 H 1.09001 * 109.46911 * 299.99886 * 7 5 3 31 31 H 1.09001 * 109.46994 * 299.99880 * 8 7 5 32 32 H 1.08995 * 109.47718 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.46895 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47033 * 60.00349 * 9 8 7 35 35 H 1.09001 * 109.47237 * 299.99947 * 10 9 8 36 36 H 1.09006 * 109.46672 * 180.02562 * 10 9 8 37 37 H 1.08994 * 109.47232 * 300.00100 * 12 11 10 38 38 H 1.09001 * 109.46911 * 60.00072 * 12 11 10 39 39 H 1.09002 * 109.47026 * 179.97438 * 12 11 10 40 40 H 1.00898 * 110.99995 * 183.95227 * 13 11 10 41 41 H 1.09002 * 109.47401 * 59.99808 * 14 13 11 42 42 H 1.09001 * 109.46874 * 299.99821 * 14 13 11 43 43 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8908 7 6 4.1138 0.5810 1.2483 8 6 5.6418 0.6604 1.2476 9 6 6.0761 2.1275 1.2473 10 6 5.5287 2.8212 -0.0017 11 6 4.0008 2.7418 -0.0009 12 6 3.4533 3.4361 -1.2495 13 7 3.4765 3.4079 1.1989 14 6 3.8746 4.8216 1.2326 15 6 3.3192 5.4704 2.4742 16 8 2.6573 4.8191 3.2545 17 7 3.5590 6.7741 2.7180 18 6 3.0541 7.3642 3.8479 19 1 2.4641 6.7845 4.5422 20 6 3.3008 8.7083 4.0990 21 7 4.0184 9.4138 3.2538 22 14 2.6136 9.5123 5.6387 23 1 3.5948 9.3813 6.7456 24 1 2.3559 10.9505 5.3733 25 1 1.3437 8.8442 6.0213 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.8048 -0.4643 1.2484 30 1 3.7244 1.0750 2.1385 31 1 6.0308 0.1661 0.3574 32 1 6.0318 0.1666 2.1375 33 1 7.1647 2.1841 1.2463 34 1 5.6871 2.6218 2.1375 35 1 5.9177 2.3270 -0.8919 36 1 5.8385 3.8663 -0.0021 37 1 3.7627 4.4811 -1.2493 38 1 3.8423 2.9421 -2.1399 39 1 2.3647 3.3790 -1.2491 40 1 2.4735 3.3133 1.2559 41 1 3.4837 5.3302 0.3513 42 1 4.9623 4.8926 1.2405 43 1 4.0886 7.2948 2.0942 44 1 4.1908 10.3521 3.4294 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330493090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:14 Heat of formation + Delta-G solvation = -128.318342 kcal Electronic energy + Delta-G solvation = -25758.540704 eV Core-core repulsion = 22096.627002 eV Total energy + Delta-G solvation = -3661.913703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.16190 -39.10030 -37.82129 -36.47570 -34.44919 -33.71266 -31.64012 -31.13318 -30.40186 -27.96563 -26.66063 -26.20684 -24.00184 -23.62617 -21.31019 -20.81124 -19.18034 -18.82703 -17.80945 -17.59208 -16.80784 -16.47735 -15.89869 -15.19937 -14.83043 -14.61383 -14.32764 -14.11969 -13.86689 -13.77547 -13.74676 -13.24154 -12.89180 -12.75796 -12.39724 -12.20115 -12.03019 -11.89729 -11.68297 -11.44528 -11.42448 -11.22594 -11.16450 -10.98140 -10.81735 -10.73207 -10.45750 -10.34778 -10.15673 -10.04653 -9.76326 -9.43633 -8.32627 -7.90274 -7.82184 -6.34926 -3.75261 2.16899 2.64922 3.22276 3.30112 3.36446 4.01271 4.15225 4.34213 4.45771 4.67678 4.82747 4.99161 5.03672 5.08292 5.16269 5.20329 5.26689 5.32121 5.34478 5.39901 5.42810 5.46249 5.64251 5.78338 5.81512 5.85532 5.87384 6.02518 6.11139 6.14024 6.20969 6.28703 6.31905 6.34037 6.39841 6.51274 6.65722 7.40225 7.61562 7.68004 7.98415 8.14718 8.69913 9.25519 9.63052 10.15424 10.83108 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019032 B = 0.003910 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.868574 B = 7159.012365 C = 7787.416585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.497 6.497 5 C -0.063 4.063 6 H 0.107 0.893 7 C -0.106 4.106 8 C -0.110 4.110 9 C -0.118 4.118 10 C -0.105 4.105 11 C 0.128 3.872 12 C -0.199 4.199 13 N -0.655 5.655 14 C 0.048 3.952 15 C 0.444 3.556 16 O -0.583 6.583 17 N -0.567 5.567 18 C -0.296 4.296 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.904 5.904 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.360 0.640 41 H 0.045 0.955 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 -17.775 -10.916 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.383 6.383 5 C -0.082 4.082 6 H 0.124 0.876 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.143 4.143 11 C 0.036 3.964 12 C -0.258 4.258 13 N -0.293 5.293 14 C -0.085 4.085 15 C 0.230 3.770 16 O -0.467 6.467 17 N -0.204 5.204 18 C -0.426 4.426 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.546 5.546 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.195 1.195 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.185 0.815 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.709 -17.926 -9.962 20.579 hybrid contribution -0.814 1.348 -0.464 1.641 sum 0.895 -16.578 -10.426 19.604 Atomic orbital electron populations 1.23257 0.76525 1.03448 1.02753 1.86495 1.23307 1.33683 1.84137 1.23932 0.92119 0.81225 0.71742 1.90579 1.67160 1.35888 1.44721 1.21180 0.86468 0.98393 1.02198 0.87551 1.21467 0.96331 0.99604 0.96973 1.21446 0.94648 0.97142 1.01488 1.21494 0.99262 0.95284 0.99537 1.21616 0.92834 1.01478 0.98341 1.20699 0.95172 0.90672 0.89846 1.22845 1.03602 1.01545 0.97773 1.60442 1.20381 1.12466 1.35975 1.21721 1.00976 0.89054 0.96748 1.19875 0.85664 0.82965 0.88498 1.90514 1.43413 1.63193 1.49540 1.41853 1.47695 1.08139 1.22676 1.19693 1.29889 0.93169 0.99859 0.88034 1.25231 0.97277 0.96403 0.99077 1.69619 1.39276 1.09085 1.36572 0.85876 0.79342 0.78027 0.81147 1.20450 1.21001 1.19497 0.88317 0.91596 0.92047 0.91479 0.89441 0.92503 0.91687 0.92569 0.89802 0.91948 0.91111 0.91825 0.92923 0.90278 0.81471 0.93694 0.89602 0.77539 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.22 10.47 -39.24 -0.41 -4.63 16 3 C 0.47 6.25 6.71 36.01 0.24 6.49 16 4 O -0.50 -8.06 11.32 -18.75 -0.21 -8.27 16 5 C -0.06 -0.73 1.99 -91.77 -0.18 -0.91 16 6 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 7 C -0.11 -1.20 4.98 -26.73 -0.13 -1.33 16 8 C -0.11 -1.09 5.92 -26.73 -0.16 -1.25 16 9 C -0.12 -1.37 5.77 -26.73 -0.15 -1.52 16 10 C -0.10 -1.20 4.35 -26.73 -0.12 -1.32 16 11 C 0.13 1.68 0.28 -131.60 -0.04 1.65 16 12 C -0.20 -2.58 7.91 37.16 0.29 -2.28 16 13 N -0.66 -11.27 4.17 -101.22 -0.42 -11.69 16 14 C 0.05 0.89 5.38 -4.97 -0.03 0.86 16 15 C 0.44 10.97 7.82 -10.98 -0.09 10.88 16 16 O -0.58 -16.48 15.78 5.55 0.09 -16.40 16 17 N -0.57 -14.87 5.29 -10.96 -0.06 -14.92 16 18 C -0.30 -8.51 9.68 -14.94 -0.14 -8.66 16 19 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -25.14 13.05 55.50 0.72 -24.42 16 22 Si 0.93 21.58 29.55 -169.99 -5.02 16.55 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 29 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.09 1.23 7.60 -51.93 -0.39 0.84 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.23 7.60 -51.93 -0.39 0.83 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.85 6.41 -51.93 -0.33 0.52 16 37 H 0.06 0.85 6.40 -51.93 -0.33 0.51 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.17 5.52 -51.93 -0.29 0.89 16 40 H 0.36 7.11 5.70 -39.29 -0.22 6.88 16 41 H 0.05 0.80 6.30 -51.93 -0.33 0.48 16 42 H 0.09 1.46 6.30 -51.93 -0.33 1.13 16 43 H 0.39 9.83 7.90 -40.82 -0.32 9.50 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -32.56 344.37 -6.33 -38.89 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -6.68 Total: 15.22 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 0.47 Total: 4.47 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.24 Total: -51.03 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.54 Total: -29.30 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.56 -6.33 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330493090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.428 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds