Wall clock time and date at job start Fri Apr 10 2020 17:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34223 * 117.00066 * 2 1 4 4 O 1.20822 * 120.00158 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00044 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47251 * 59.99528 * 5 3 2 7 7 C 1.53001 * 109.46888 * 299.99851 * 5 3 2 8 8 C 1.52998 * 109.47477 * 179.97438 * 7 5 3 9 9 C 1.53007 * 109.46897 * 59.99555 * 8 7 5 10 10 C 1.53002 * 109.47098 * 300.00277 * 9 8 7 11 11 C 1.52994 * 109.47122 * 60.00071 * 10 9 8 12 12 C 1.53001 * 109.47126 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47073 * 59.99769 * 11 10 9 14 14 C 1.46901 * 110.99793 * 60.00150 * 13 11 10 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 11 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99721 * 22 20 18 24 24 H 1.48498 * 109.47211 * 209.99980 * 22 20 18 25 25 H 1.48505 * 109.46734 * 329.99774 * 22 20 18 26 26 H 1.08996 * 109.47633 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 300.00597 * 1 2 3 28 28 H 1.08999 * 109.47021 * 60.00304 * 1 2 3 29 29 H 1.08997 * 109.47727 * 59.99867 * 7 5 3 30 30 H 1.09001 * 109.46911 * 299.99886 * 7 5 3 31 31 H 1.09001 * 109.46994 * 299.99880 * 8 7 5 32 32 H 1.08995 * 109.47718 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.46895 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47033 * 60.00349 * 9 8 7 35 35 H 1.09001 * 109.47237 * 299.99947 * 10 9 8 36 36 H 1.09006 * 109.46672 * 180.02562 * 10 9 8 37 37 H 1.08994 * 109.47232 * 300.00100 * 12 11 10 38 38 H 1.09001 * 109.46911 * 60.00072 * 12 11 10 39 39 H 1.09002 * 109.47026 * 179.97438 * 12 11 10 40 40 H 1.00898 * 110.99995 * 183.95227 * 13 11 10 41 41 H 1.09002 * 109.47401 * 59.99808 * 14 13 11 42 42 H 1.09001 * 109.46874 * 299.99821 * 14 13 11 43 43 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8908 7 6 4.1138 0.5810 1.2483 8 6 5.6418 0.6604 1.2476 9 6 6.0761 2.1275 1.2473 10 6 5.5287 2.8212 -0.0017 11 6 4.0008 2.7418 -0.0009 12 6 3.4533 3.4361 -1.2495 13 7 3.4765 3.4079 1.1989 14 6 3.8746 4.8216 1.2326 15 6 3.3192 5.4704 2.4742 16 8 2.6573 4.8191 3.2545 17 7 3.5590 6.7741 2.7180 18 6 3.0541 7.3642 3.8479 19 1 2.4641 6.7845 4.5422 20 6 3.3008 8.7083 4.0990 21 7 4.0184 9.4138 3.2538 22 14 2.6136 9.5123 5.6387 23 1 3.5948 9.3813 6.7456 24 1 2.3559 10.9505 5.3733 25 1 1.3437 8.8442 6.0213 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.8048 -0.4643 1.2484 30 1 3.7244 1.0750 2.1385 31 1 6.0308 0.1661 0.3574 32 1 6.0318 0.1666 2.1375 33 1 7.1647 2.1841 1.2463 34 1 5.6871 2.6218 2.1375 35 1 5.9177 2.3270 -0.8919 36 1 5.8385 3.8663 -0.0021 37 1 3.7627 4.4811 -1.2493 38 1 3.8423 2.9421 -2.1399 39 1 2.3647 3.3790 -1.2491 40 1 2.4735 3.3133 1.2559 41 1 3.4837 5.3302 0.3513 42 1 4.9623 4.8926 1.2405 43 1 4.0886 7.2948 2.0942 44 1 4.1908 10.3521 3.4294 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330493090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:13 Heat of formation + Delta-G solvation = -150.771085 kcal Electronic energy + Delta-G solvation = -25759.514328 eV Core-core repulsion = 22096.627002 eV Total energy + Delta-G solvation = -3662.887327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.18878 -40.37524 -39.53802 -37.48602 -36.09026 -35.36087 -33.28262 -32.56606 -31.60919 -28.81905 -28.09650 -27.42413 -25.83395 -24.55783 -22.37736 -21.72423 -21.01157 -19.99954 -19.81303 -18.58901 -18.09570 -17.51856 -17.28851 -16.79890 -16.38838 -15.95347 -15.65457 -15.55277 -15.35719 -14.91629 -14.75231 -14.39655 -14.22110 -13.94845 -13.81832 -13.51223 -13.20112 -13.04961 -12.98492 -12.89826 -12.67766 -12.50114 -12.43666 -12.34660 -12.12910 -12.07564 -11.75038 -11.71809 -11.51784 -11.35200 -10.96801 -10.75671 -10.33295 -10.02247 -9.18824 -8.47358 -5.96292 1.15924 1.36725 1.39685 1.52971 1.76697 2.04755 2.28390 2.93416 3.19422 3.45457 3.53112 3.78232 3.92299 4.08697 4.27285 4.27709 4.29464 4.31601 4.35165 4.43313 4.48744 4.50329 4.55269 4.57789 4.69845 4.77261 4.87345 4.90606 5.03845 5.08086 5.19700 5.32394 5.37086 5.39220 5.40004 5.46237 5.50394 5.72559 5.93197 6.19206 6.46216 6.59938 6.76612 7.11768 7.55158 8.11338 8.70286 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019032 B = 0.003910 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.868574 B = 7159.012365 C = 7787.416585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.532 6.532 5 C -0.060 4.060 6 H 0.144 0.856 7 C -0.102 4.102 8 C -0.104 4.104 9 C -0.118 4.118 10 C -0.103 4.103 11 C 0.125 3.875 12 C -0.195 4.195 13 N -0.664 5.664 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.269 1.269 24 H -0.269 1.269 25 H -0.275 1.275 26 H 0.134 0.866 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.344 0.656 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 -18.928 -12.324 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.422 6.422 5 C -0.079 4.079 6 H 0.162 0.838 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.156 4.156 10 C -0.140 4.140 11 C 0.033 3.967 12 C -0.253 4.253 13 N -0.300 5.300 14 C -0.067 4.067 15 C 0.226 3.774 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.194 1.194 24 H -0.193 1.193 25 H -0.200 1.200 26 H 0.152 0.848 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.166 0.834 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.229 0.771 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.074 -19.091 -11.401 22.447 hybrid contribution -1.263 1.650 -0.043 2.078 sum 1.811 -17.441 -11.444 20.939 Atomic orbital electron populations 1.23498 0.75334 1.05584 1.02100 1.86486 1.24509 1.32776 1.83644 1.24381 0.92956 0.81102 0.70754 1.90578 1.68066 1.37092 1.46426 1.21288 0.85307 0.97511 1.03827 0.83835 1.21419 0.97402 0.99996 0.95161 1.21438 0.93340 0.96160 1.03179 1.21466 1.00079 0.96149 0.97902 1.21654 0.91174 1.01533 0.99662 1.20913 0.96334 0.91298 0.88116 1.22775 1.02245 1.01441 0.98861 1.60467 1.19236 1.11324 1.38962 1.21550 1.01638 0.89921 0.93604 1.20932 0.84459 0.82345 0.89681 1.90476 1.45114 1.64008 1.51500 1.41912 1.47941 1.08831 1.22357 1.19654 1.31632 0.94113 1.01038 0.90590 1.26036 0.96983 0.96184 1.01963 1.69677 1.39155 1.09606 1.37687 0.84925 0.78458 0.77421 0.77489 1.19441 1.19346 1.19990 0.84777 0.93118 0.91913 0.89781 0.93268 0.89413 0.91329 0.90988 0.93786 0.88505 0.91879 0.92555 0.89931 0.92484 0.83360 0.92627 0.87568 0.77054 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -7.98 10.47 -51.34 -0.54 -8.52 16 3 C 0.46 12.15 6.71 71.24 0.48 12.62 16 4 O -0.53 -17.73 11.32 21.98 0.25 -17.48 16 5 C -0.06 -1.28 1.99 -11.54 -0.02 -1.30 16 6 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 7 C -0.10 -2.14 4.98 30.59 0.15 -1.99 16 8 C -0.10 -1.78 5.92 30.60 0.18 -1.60 16 9 C -0.12 -2.52 5.77 30.60 0.18 -2.35 16 10 C -0.10 -2.08 4.35 30.59 0.13 -1.94 16 11 C 0.12 3.10 0.28 3.52 0.00 3.10 16 12 C -0.19 -4.74 7.91 71.98 0.57 -4.17 16 13 N -0.66 -23.35 4.17 -474.14 -1.97 -25.32 16 14 C 0.07 2.49 5.38 85.56 0.46 2.95 16 15 C 0.44 22.54 7.82 87.66 0.69 23.23 16 16 O -0.62 -37.25 15.78 -3.07 -0.05 -37.30 16 17 N -0.57 -31.14 5.29 -306.98 -1.62 -32.76 16 18 C -0.33 -19.89 9.68 84.04 0.81 -19.08 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 21 N -0.92 -51.06 13.05 21.66 0.28 -50.78 16 22 Si 0.99 44.33 29.55 68.60 2.03 46.36 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 28 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 29 H 0.08 1.47 8.11 -2.39 -0.02 1.45 16 30 H 0.05 1.42 7.60 -2.39 -0.02 1.40 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.29 7.60 -2.39 -0.02 1.27 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.38 6.41 -2.38 -0.02 1.36 16 37 H 0.06 1.43 6.40 -2.39 -0.02 1.41 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 1.68 5.52 -2.39 -0.01 1.66 16 40 H 0.34 14.20 5.70 -89.70 -0.51 13.69 16 41 H 0.06 2.01 6.30 -2.39 -0.02 2.00 16 42 H 0.11 3.61 6.30 -2.39 -0.02 3.60 16 43 H 0.40 20.39 7.90 -92.71 -0.73 19.65 16 44 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -73.79 344.37 3.45 -70.34 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -0.22 Total: 44.49 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 5.29 Total: 10.98 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.32 Total: -108.87 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.34 Total: -63.30 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.79 3.45 -70.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330493090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.433 kcal (2) G-P(sol) polarization free energy of solvation -73.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds