Wall clock time and date at job start Fri Apr 10 2020 17:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00475 * 2 1 4 4 O 1.20830 * 119.99393 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00706 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46913 * 300.00725 * 5 3 2 7 7 C 1.53002 * 109.46926 * 59.99777 * 5 3 2 8 8 C 1.52996 * 109.47346 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47328 * 300.00400 * 8 7 5 10 10 C 1.53002 * 109.47233 * 59.99531 * 9 8 7 11 11 C 1.52992 * 109.47490 * 179.97438 * 5 3 2 12 12 C 1.52997 * 109.47482 * 300.00187 * 11 5 3 13 13 N 1.46902 * 109.47181 * 60.00409 * 11 5 3 14 14 C 1.46891 * 111.00371 * 180.02562 * 13 11 5 15 15 C 1.50696 * 109.47517 * 179.97438 * 14 13 11 16 16 O 1.21298 * 119.99919 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00596 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00492 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99716 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00190 * 179.97438 * 18 17 15 21 21 N 1.31416 * 120.00216 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00068 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46891 * 89.99981 * 22 20 18 24 24 H 1.48499 * 109.47297 * 209.99852 * 22 20 18 25 25 H 1.48497 * 109.46918 * 329.99710 * 22 20 18 26 26 H 1.09005 * 109.47177 * 299.99926 * 1 2 3 27 27 H 1.08999 * 109.47324 * 59.99712 * 1 2 3 28 28 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00784 * 7 5 3 30 30 H 1.09000 * 109.46986 * 60.00556 * 7 5 3 31 31 H 1.09000 * 109.46870 * 60.00183 * 8 7 5 32 32 H 1.09001 * 109.47372 * 180.02562 * 8 7 5 33 33 H 1.08992 * 109.47399 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.46724 * 300.00183 * 9 8 7 35 35 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.46986 * 60.00203 * 10 9 8 37 37 H 1.09002 * 109.47153 * 59.99783 * 12 11 5 38 38 H 1.09001 * 109.46832 * 299.99974 * 12 11 5 39 39 H 1.09004 * 109.47261 * 179.97438 * 12 11 5 40 40 H 1.00901 * 111.00140 * 56.03995 * 13 11 5 41 41 H 1.09000 * 109.46944 * 299.99658 * 14 13 11 42 42 H 1.09001 * 109.47173 * 59.99579 * 14 13 11 43 43 H 0.96997 * 119.99741 * 359.97438 * 17 15 14 44 44 H 0.96998 * 120.00470 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7804 0.8891 7 6 4.1129 0.5815 -1.2502 8 6 5.6408 0.6610 -1.2506 9 6 6.0752 2.1280 -1.2501 10 6 5.5286 2.8214 -0.0005 11 6 4.0002 2.7419 -0.0011 12 6 3.4527 3.4353 -1.2502 13 7 3.4755 3.4082 1.1984 14 6 3.8725 4.8220 1.2316 15 6 3.3168 5.4709 2.4730 16 8 2.6546 4.8197 3.2532 17 7 3.5546 6.7750 2.7160 18 6 3.0486 7.3655 3.8451 19 1 2.4597 6.7854 4.5401 20 6 3.2943 8.7099 4.0957 21 7 2.8096 9.2757 5.1783 22 14 4.3135 9.7131 2.8939 23 1 3.4205 10.3219 1.8755 24 1 5.0307 10.7861 3.6284 25 1 5.2995 8.8286 2.2225 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.8038 -0.4638 -1.2503 30 1 3.7228 1.0758 -2.1399 31 1 6.0305 0.1664 -0.3608 32 1 6.0301 0.1674 -2.1410 33 1 7.1636 2.1847 -1.2499 34 1 5.6853 2.6226 -2.1398 35 1 5.8376 3.8666 -0.0003 36 1 5.9184 2.3268 0.8892 37 1 2.3641 3.3783 -1.2498 38 1 3.8421 2.9410 -2.1403 39 1 3.7614 4.4807 -1.2503 40 1 3.7706 2.9295 2.0362 41 1 4.9601 4.8938 1.2395 42 1 3.4812 5.3301 0.3502 43 1 4.0838 7.2959 2.0919 44 1 2.9808 10.2144 5.3531 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330493092.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:20 Heat of formation + Delta-G solvation = -143.027574 kcal Electronic energy + Delta-G solvation = -25577.387609 eV Core-core repulsion = 21914.836066 eV Total energy + Delta-G solvation = -3662.551543 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03704 -40.46512 -39.71080 -37.25834 -36.22574 -35.58575 -33.75688 -32.47145 -31.18092 -28.88126 -28.52076 -27.54724 -25.64474 -24.48355 -22.42008 -21.74493 -21.24601 -20.25155 -19.50962 -18.48541 -18.22833 -17.42475 -17.20802 -16.94458 -16.56174 -16.03769 -15.85403 -15.49448 -15.15111 -14.85243 -14.65940 -14.34939 -14.27618 -14.03785 -13.89904 -13.75339 -13.48741 -13.33657 -12.96071 -12.91693 -12.79851 -12.43524 -12.33783 -12.07242 -12.02053 -11.97780 -11.73392 -11.60595 -11.52951 -11.21242 -11.05268 -10.88603 -10.44182 -10.25967 -9.14119 -8.42543 -6.03556 1.28451 1.34731 1.40418 1.43297 1.86657 1.94637 2.21997 2.69261 3.13464 3.33297 3.51488 3.71989 3.97688 4.07858 4.13840 4.21942 4.26673 4.31103 4.33961 4.35977 4.39799 4.42876 4.46347 4.56964 4.72205 4.76306 4.88351 4.95165 5.01237 5.07588 5.17670 5.22145 5.32173 5.36177 5.39417 5.51451 5.56386 5.72235 5.90331 6.11180 6.43845 6.59099 6.86780 6.97849 7.38312 7.95771 8.75414 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.003976 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.333560 B = 7040.307962 C = 8034.946184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.503 6.503 5 C -0.062 4.062 6 H 0.111 0.889 7 C -0.104 4.104 8 C -0.113 4.113 9 C -0.116 4.116 10 C -0.147 4.147 11 C 0.132 3.868 12 C -0.154 4.154 13 N -0.670 5.670 14 C 0.065 3.935 15 C 0.449 3.551 16 O -0.615 6.615 17 N -0.591 5.591 18 C -0.330 4.330 19 H 0.052 0.948 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.231 1.231 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.338 0.662 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.389 0.611 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -18.630 -20.742 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.286 6.286 3 C 0.297 3.703 4 O -0.390 6.390 5 C -0.081 4.081 6 H 0.128 0.872 7 C -0.142 4.142 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.187 4.187 11 C 0.041 3.959 12 C -0.211 4.211 13 N -0.301 5.301 14 C -0.067 4.067 15 C 0.237 3.763 16 O -0.499 6.499 17 N -0.233 5.233 18 C -0.459 4.459 19 H 0.071 0.929 20 C -0.213 4.213 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.154 1.154 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.225 0.775 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.697 -18.457 -20.354 28.534 hybrid contribution 0.475 1.103 0.714 1.398 sum 8.172 -17.354 -19.640 27.453 Atomic orbital electron populations 1.23397 0.75809 1.05191 1.01786 1.86467 1.24118 1.33540 1.84458 1.24105 0.92808 0.81048 0.72372 1.90701 1.67473 1.36811 1.43980 1.21180 0.86058 0.97391 1.03497 0.87156 1.21591 0.97173 1.00966 0.94500 1.21542 0.93389 0.96591 1.03516 1.21569 1.01067 0.95666 0.97049 1.22328 0.94140 1.01973 1.00217 1.20840 0.92969 0.91215 0.90868 1.22225 1.02313 1.00432 0.96166 1.60179 1.64306 1.00826 1.04777 1.21619 0.99179 0.90722 0.95144 1.21034 0.83832 0.82122 0.89329 1.90537 1.43953 1.64058 1.51383 1.42014 1.49362 1.09811 1.22112 1.19004 1.31782 0.94764 1.00369 0.92942 1.26125 0.98866 0.97235 0.99085 1.69807 1.46300 1.13638 1.27826 0.85353 0.79045 0.78744 0.78296 1.18288 1.19711 1.15383 0.93597 0.92147 0.85042 0.89497 0.90865 0.91182 0.89483 0.90568 0.90958 0.91044 0.91541 0.92376 0.89825 0.92406 0.84380 0.90262 0.87689 0.77524 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.37 -8.69 10.47 -51.35 -0.54 -9.23 16 3 C 0.45 12.34 6.80 71.23 0.48 12.83 16 4 O -0.50 -17.83 12.63 21.95 0.28 -17.55 16 5 C -0.06 -1.26 2.06 -11.54 -0.02 -1.29 16 6 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 7 C -0.10 -1.40 4.86 30.59 0.15 -1.25 16 8 C -0.11 -1.12 5.92 30.59 0.18 -0.94 16 9 C -0.12 -1.34 5.65 30.60 0.17 -1.17 16 10 C -0.15 -2.51 4.50 30.61 0.14 -2.37 16 11 C 0.13 2.99 0.31 3.54 0.00 2.99 16 12 C -0.15 -3.51 7.22 71.98 0.52 -2.99 16 13 N -0.67 -21.78 4.51 -474.10 -2.14 -23.92 16 14 C 0.07 2.20 5.38 85.56 0.46 2.66 16 15 C 0.45 21.70 7.82 87.66 0.69 22.38 16 16 O -0.61 -36.39 15.78 -3.08 -0.05 -36.44 16 17 N -0.59 -29.35 5.09 -306.99 -1.56 -30.91 16 18 C -0.33 -20.11 10.16 84.04 0.85 -19.25 16 19 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 20 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 21 N -0.94 -57.74 13.96 21.66 0.30 -57.44 16 22 Si 0.97 39.86 27.74 68.60 1.90 41.77 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 26 H 0.05 1.06 8.13 -2.38 -0.02 1.04 16 27 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 28 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.03 8.11 -2.39 -0.02 1.01 16 30 H 0.07 0.99 6.43 -2.39 -0.02 0.97 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.81 6.43 -2.39 -0.02 0.79 16 35 H 0.07 1.25 6.40 -2.39 -0.02 1.24 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.71 5.52 -2.39 -0.01 1.70 16 38 H 0.08 1.41 4.81 -2.39 -0.01 1.40 16 39 H 0.06 1.28 6.40 -2.38 -0.02 1.26 16 40 H 0.34 11.56 8.42 -89.69 -0.76 10.81 16 41 H 0.08 2.15 6.30 -2.39 -0.02 2.14 16 42 H 0.11 3.25 6.30 -2.39 -0.02 3.24 16 43 H 0.39 16.02 5.76 -92.71 -0.53 15.48 16 44 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -83.32 339.34 3.17 -80.15 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -0.31 Total: 40.52 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.29 Total: 13.05 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -3.40 Total: -112.27 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -0.31 Total: -63.22 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.90 Total: 41.77 kcal Total: -83.32 3.17 -80.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330493092.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.876 kcal (2) G-P(sol) polarization free energy of solvation -83.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds