Wall clock time and date at job start Fri Apr 10 2020 17:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99916 * 2 1 4 4 O 1.20830 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00069 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46979 * 300.00355 * 5 3 2 7 7 C 1.53011 * 109.46791 * 59.99793 * 5 3 2 8 8 C 1.53001 * 109.46727 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.47316 * 299.99875 * 8 7 5 10 10 C 1.53005 * 109.46874 * 60.00158 * 9 8 7 11 11 C 1.52997 * 109.47366 * 179.97438 * 5 3 2 12 12 C 1.53005 * 109.46765 * 60.00115 * 11 5 3 13 13 N 1.46893 * 109.47125 * 300.00326 * 11 5 3 14 14 C 1.46902 * 111.00008 * 179.97438 * 13 11 5 15 15 C 1.50703 * 109.47332 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99735 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99823 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99952 * 180.02562 * 17 15 14 19 19 H 1.08006 * 119.99824 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00239 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99930 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99923 * 22 20 18 26 26 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47318 * 300.00870 * 1 2 3 28 28 H 1.09007 * 109.46816 * 60.00444 * 1 2 3 29 29 H 1.09001 * 109.46899 * 60.00514 * 7 5 3 30 30 H 1.08999 * 109.46969 * 299.99803 * 7 5 3 31 31 H 1.09005 * 109.46766 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47309 * 59.99739 * 8 7 5 33 33 H 1.09004 * 109.46958 * 300.00437 * 9 8 7 34 34 H 1.08995 * 109.47115 * 180.02562 * 9 8 7 35 35 H 1.08999 * 109.46723 * 180.02562 * 10 9 8 36 36 H 1.08993 * 109.47146 * 59.99892 * 10 9 8 37 37 H 1.08995 * 109.47433 * 299.99822 * 12 11 5 38 38 H 1.09004 * 109.47100 * 60.00158 * 12 11 5 39 39 H 1.09002 * 109.46835 * 179.97438 * 12 11 5 40 40 H 1.00897 * 111.00417 * 303.94699 * 13 11 5 41 41 H 1.09005 * 109.47415 * 59.99799 * 14 13 11 42 42 H 1.09003 * 109.47295 * 300.00141 * 14 13 11 43 43 H 0.96996 * 120.00501 * 359.97438 * 17 15 14 44 44 H 0.96993 * 120.00098 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1138 0.5810 -1.2484 8 6 5.6418 0.6606 -1.2475 9 6 6.0761 2.1277 -1.2473 10 6 5.5286 2.8215 0.0016 11 6 4.0001 2.7421 -0.0002 12 6 3.4525 3.4364 1.2485 13 7 3.4754 3.4072 -1.2002 14 6 3.8725 4.8211 -1.2346 15 6 3.3177 5.4687 -2.4771 16 8 2.6562 4.8166 -3.2571 17 7 3.5567 6.7724 -2.7217 18 6 3.0515 7.3616 -3.8518 19 1 2.4624 6.7810 -4.5464 20 6 3.2974 8.7058 -4.1037 21 7 4.0137 9.4123 -3.2584 22 14 2.6085 9.5088 -5.6432 23 1 1.8423 8.5050 -6.4246 24 1 3.7252 10.0321 -6.4706 25 1 1.7110 10.6276 -5.2587 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.7245 1.0750 -2.1386 30 1 3.8048 -0.4643 -1.2482 31 1 6.0318 0.1666 -2.1374 32 1 6.0308 0.1665 -0.3572 33 1 5.6871 2.6218 -2.1376 34 1 7.1646 2.1843 -1.2471 35 1 5.8376 3.8668 0.0014 36 1 5.9176 2.3273 0.8918 37 1 2.3641 3.3794 1.2481 38 1 3.8419 2.9428 2.1389 39 1 3.7620 4.4816 1.2481 40 1 3.7706 2.9280 -2.0376 41 1 4.9601 4.8930 -1.2425 42 1 3.4812 5.3300 -0.3536 43 1 4.0854 7.2939 -2.0978 44 1 4.3705 8.9957 -2.4585 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330493093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:22 Heat of formation + Delta-G solvation = -147.976629 kcal Electronic energy + Delta-G solvation = -25799.688211 eV Core-core repulsion = 22136.922061 eV Total energy + Delta-G solvation = -3662.766150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.08448 -40.54383 -39.71457 -37.30012 -36.45276 -35.31284 -33.16885 -32.65510 -31.75926 -28.77117 -28.21465 -27.33919 -25.78410 -24.56490 -22.48308 -21.81707 -21.40138 -20.02440 -19.63839 -18.60688 -18.39307 -17.46810 -17.21126 -16.95673 -16.70923 -16.02111 -15.72641 -15.53041 -15.37205 -15.12046 -14.71600 -14.63275 -14.18410 -13.89212 -13.75021 -13.42790 -13.31230 -13.02448 -12.93230 -12.81430 -12.69889 -12.64646 -12.44477 -12.12412 -11.98293 -11.89667 -11.76608 -11.62165 -11.53834 -11.41675 -11.05581 -10.84513 -10.41064 -10.11626 -9.18551 -8.94811 -6.08099 1.37656 1.51026 1.51758 1.80152 1.85191 1.99902 2.38629 2.80045 3.14945 3.36229 3.49589 3.67867 3.78923 4.03744 4.08444 4.13976 4.22509 4.28095 4.33435 4.33859 4.35332 4.38576 4.46680 4.49887 4.67289 4.71189 4.83459 4.83833 4.94567 5.00202 5.10514 5.14438 5.21812 5.32346 5.36178 5.43947 5.58596 5.65765 5.93680 6.07518 6.43223 6.57400 6.73880 6.96128 7.42781 7.91908 8.53123 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.018998 B = 0.003926 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.477639 B = 7130.174321 C = 7756.614031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.505 6.505 5 C -0.058 4.058 6 H 0.143 0.857 7 C -0.114 4.114 8 C -0.107 4.107 9 C -0.129 4.129 10 C -0.144 4.144 11 C 0.127 3.873 12 C -0.154 4.154 13 N -0.661 5.661 14 C 0.068 3.932 15 C 0.442 3.558 16 O -0.619 6.619 17 N -0.587 5.587 18 C -0.410 4.410 19 H 0.069 0.931 20 C -0.041 4.041 21 N -0.916 5.916 22 Si 1.138 2.862 23 H -0.282 1.282 24 H -0.268 1.268 25 H -0.271 1.271 26 H 0.132 0.868 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.339 0.661 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.384 0.616 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -20.080 11.680 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.296 3.704 4 O -0.391 6.391 5 C -0.077 4.077 6 H 0.161 0.839 7 C -0.152 4.152 8 C -0.145 4.145 9 C -0.166 4.166 10 C -0.183 4.183 11 C 0.036 3.964 12 C -0.212 4.212 13 N -0.295 5.295 14 C -0.065 4.065 15 C 0.230 3.770 16 O -0.504 6.504 17 N -0.226 5.226 18 C -0.539 4.539 19 H 0.088 0.912 20 C -0.239 4.239 21 N -0.556 5.556 22 Si 0.958 3.042 23 H -0.208 1.208 24 H -0.193 1.193 25 H -0.196 1.196 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.218 0.782 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.154 -18.654 10.587 21.679 hybrid contribution 0.643 -0.764 0.712 1.226 sum 3.797 -19.418 11.299 22.784 Atomic orbital electron populations 1.23401 0.75817 1.05221 1.01751 1.86468 1.24102 1.33409 1.84435 1.24124 0.92835 0.81063 0.72337 1.90703 1.67511 1.36896 1.44026 1.21213 0.86026 0.96972 1.03487 0.83936 1.21578 0.97317 1.01287 0.94992 1.21507 0.93178 0.95777 1.03990 1.21621 1.01515 0.96501 0.96999 1.22260 0.94232 1.01657 1.00106 1.20887 0.93045 0.91557 0.90865 1.22151 1.02546 1.00449 0.96021 1.60249 1.63965 1.00318 1.05002 1.21535 0.98549 0.91168 0.95218 1.20938 0.84322 0.82280 0.89438 1.90486 1.44510 1.63960 1.51476 1.41981 1.48700 1.09499 1.22451 1.20561 1.34497 0.97049 1.01825 0.91244 1.27831 0.96292 0.93079 1.06731 1.70905 1.33765 1.38659 1.12245 0.82555 0.76201 0.74953 0.70456 1.20754 1.19344 1.19636 0.84954 0.92220 0.93607 0.93703 0.88909 0.90645 0.88865 0.94744 0.90006 0.91718 0.88183 0.92172 0.89898 0.92812 0.84024 0.91399 0.88540 0.78212 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.37 -8.61 10.47 -51.41 -0.54 -9.15 16 3 C 0.45 12.46 6.80 71.24 0.48 12.94 16 4 O -0.51 -18.22 12.63 21.95 0.28 -17.94 16 5 C -0.06 -1.20 1.99 -11.54 -0.02 -1.22 16 6 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 7 C -0.11 -2.17 4.87 30.60 0.15 -2.02 16 8 C -0.11 -1.56 5.92 30.60 0.18 -1.38 16 9 C -0.13 -2.38 5.66 30.60 0.17 -2.20 16 10 C -0.14 -2.66 4.36 30.61 0.13 -2.53 16 11 C 0.13 3.08 0.28 3.55 0.00 3.08 16 12 C -0.15 -3.77 7.91 71.98 0.57 -3.20 16 13 N -0.66 -22.82 4.37 -474.06 -2.07 -24.89 16 14 C 0.07 2.52 5.38 85.56 0.46 2.98 16 15 C 0.44 22.60 7.82 87.66 0.69 23.28 16 16 O -0.62 -37.01 15.78 -3.05 -0.05 -37.05 16 17 N -0.59 -31.52 5.28 -306.98 -1.62 -33.14 16 18 C -0.41 -24.52 9.68 84.04 0.81 -23.71 16 19 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 20 C -0.04 -2.31 5.50 84.93 0.47 -1.85 16 21 N -0.92 -52.45 13.68 21.66 0.30 -52.15 16 22 Si 1.14 50.34 29.92 68.60 2.05 52.39 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.05 1.06 8.13 -2.38 -0.02 1.04 16 29 H 0.04 1.15 6.57 -2.39 -0.02 1.13 16 30 H 0.09 1.48 8.11 -2.39 -0.02 1.46 16 31 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.03 0.85 6.76 -2.39 -0.02 0.83 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.32 6.41 -2.39 -0.02 1.31 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.86 5.52 -2.39 -0.01 1.84 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.34 6.40 -2.39 -0.02 1.32 16 40 H 0.34 12.37 4.88 -89.70 -0.44 11.93 16 41 H 0.07 2.20 6.31 -2.38 -0.02 2.18 16 42 H 0.10 3.45 6.30 -2.39 -0.02 3.43 16 43 H 0.38 18.90 6.73 -92.71 -0.62 18.28 16 44 H 0.26 14.40 6.77 -92.71 -0.63 13.77 16 Total: -1.00 -78.90 341.40 3.75 -75.15 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: 0.11 Total: 40.80 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.29 Total: 5.99 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -3.40 Total: -110.19 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -0.31 Total: -64.15 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.05 Total: 52.39 kcal Total: -78.90 3.75 -75.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330493093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.825 kcal (2) G-P(sol) polarization free energy of solvation -78.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds