Wall clock time and date at job start Fri Apr 10 2020 17:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00312 * 2 1 4 4 H 1.48497 * 109.46777 * 270.00098 * 3 2 1 5 5 H 1.48500 * 109.46758 * 30.00011 * 3 2 1 6 6 H 1.48493 * 109.47135 * 149.99841 * 3 2 1 7 7 C 1.38957 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99537 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99933 * 179.97438 * 7 2 1 10 10 C 1.34783 * 119.99898 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99671 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00184 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47268 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00060 * 186.20208 * 13 12 10 15 15 H 1.09006 * 109.46920 * 32.25678 * 14 13 12 16 16 C 1.53004 * 109.47280 * 272.25530 * 14 13 12 17 17 C 1.53005 * 117.49584 * 133.44717 * 16 14 13 18 18 C 1.52998 * 117.49509 * 64.78964 * 16 14 13 19 19 C 1.52999 * 109.47047 * 152.25529 * 14 13 12 20 20 C 1.53003 * 109.89842 * 179.76496 * 19 14 13 21 21 O 1.42894 * 109.47192 * 179.76669 * 20 19 14 22 22 C 1.54384 * 109.83197 * 300.69631 * 19 14 13 23 23 C 1.55308 * 102.25188 * 98.15532 * 22 19 14 24 24 C 1.54944 * 100.94019 * 34.13681 * 23 22 19 25 25 O 1.43236 * 109.83106 * 58.83105 * 19 14 13 26 26 H 0.96995 * 119.99984 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00580 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.47300 * 59.99785 * 12 10 9 29 29 H 1.09006 * 109.47078 * 300.00061 * 12 10 9 30 30 H 1.00894 * 111.00104 * 310.16429 * 13 12 10 31 31 H 1.08997 * 115.54632 * 279.12037 * 16 14 13 32 32 H 1.09001 * 117.49792 * 0.02562 * 17 16 14 33 33 H 1.09003 * 117.49134 * 145.02266 * 17 16 14 34 34 H 1.09000 * 117.49458 * 214.97589 * 18 16 14 35 35 H 1.08994 * 117.50511 * 0.02562 * 18 16 14 36 36 H 1.09000 * 109.46611 * 299.76879 * 20 19 14 37 37 H 1.08997 * 109.47036 * 59.76242 * 20 19 14 38 38 H 0.96699 * 113.99952 * 179.97438 * 21 20 19 39 39 H 1.09001 * 110.84898 * 216.34929 * 22 19 14 40 40 H 1.09003 * 110.84689 * 339.96859 * 22 19 14 41 41 H 1.09002 * 111.12283 * 276.21720 * 23 22 19 42 42 H 1.08999 * 111.15916 * 152.07123 * 23 22 19 43 43 H 1.09007 * 110.30682 * 204.64158 * 24 23 22 44 44 H 1.08994 * 110.30996 * 82.47159 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3707 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0503 -3.7557 0.0006 14 6 7.5112 -3.7975 0.1488 15 1 7.8381 -2.9592 0.7640 16 6 8.1667 -3.7041 -1.2306 17 6 9.3328 -2.7271 -1.3938 18 6 7.9725 -2.4071 -2.0185 19 6 7.9184 -5.1113 0.8190 20 6 9.4396 -5.1677 0.9729 21 8 9.8093 -6.3951 1.6043 22 6 7.2473 -5.2222 2.2049 23 6 6.0179 -6.1225 1.9047 24 6 6.5955 -7.0531 0.8087 25 8 7.4684 -6.2190 0.0303 26 1 -0.4850 0.8400 -0.0004 27 1 3.8648 -0.3634 -0.0004 28 1 5.9241 -1.8569 0.8900 29 1 5.9240 -1.8569 -0.8900 30 1 5.5980 -4.2988 0.7207 31 1 8.2071 -4.6352 -1.7958 32 1 9.6333 -2.1513 -0.5184 33 1 10.1403 -3.0154 -2.0669 34 1 7.8857 -2.4848 -3.1022 35 1 7.3782 -1.6202 -1.5541 36 1 9.9066 -5.1097 -0.0103 37 1 9.7743 -4.3295 1.5841 38 1 10.7618 -6.4994 1.7340 39 1 7.9140 -5.7022 2.9214 40 1 6.9322 -4.2421 2.5629 41 1 5.1844 -5.5340 1.5213 42 1 5.7217 -6.6907 2.7865 43 1 5.7928 -7.4466 0.1851 44 1 7.1576 -7.8690 1.2629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339770808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:34 Heat of formation + Delta-G solvation = -86.262398 kcal Electronic energy + Delta-G solvation = -25697.936943 eV Core-core repulsion = 22037.846923 eV Total energy + Delta-G solvation = -3660.090020 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56394 -38.42812 -37.40265 -36.54880 -34.52968 -33.77943 -31.98774 -31.66512 -31.25137 -27.53691 -25.65553 -24.97830 -23.24416 -22.36970 -22.04951 -20.82558 -19.81418 -19.31606 -18.44713 -17.70491 -16.69347 -16.16778 -15.86821 -15.47370 -15.11070 -15.03444 -14.82314 -14.49878 -14.11005 -13.83550 -13.37609 -13.29908 -13.01383 -12.69847 -12.61862 -12.49395 -12.11546 -11.92085 -11.78240 -11.68172 -11.32296 -11.12566 -11.08497 -10.87345 -10.72479 -10.60066 -10.28663 -10.07547 -9.99597 -9.94495 -9.57779 -9.35294 -8.51762 -8.19601 -8.09167 -6.31394 -3.82692 3.01612 3.06575 3.14456 3.62674 3.70782 3.74866 3.88161 4.09752 4.41829 4.49633 4.60848 4.67169 4.77275 4.92306 4.97362 5.04999 5.15208 5.16365 5.20194 5.24236 5.29438 5.42217 5.49801 5.57528 5.64880 5.70151 5.74495 5.78611 5.81254 5.88132 5.90381 5.95373 6.05216 6.15031 6.22998 6.38557 7.07082 7.22217 7.40571 7.58214 7.69019 8.14317 8.59402 8.94541 9.42076 9.81968 10.81757 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.004069 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.690470 B = 6879.231356 C = 7696.362621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.039 3.961 13 N -0.655 5.655 14 C 0.118 3.882 15 H 0.051 0.949 16 C -0.126 4.126 17 C -0.190 4.190 18 C -0.175 4.175 19 C 0.115 3.885 20 C 0.077 3.923 21 O -0.565 6.565 22 C -0.151 4.151 23 C -0.163 4.163 24 C 0.059 3.941 25 O -0.349 6.349 26 H 0.273 0.727 27 H 0.370 0.630 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.354 0.646 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.376 0.624 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.323 -6.322 3.143 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.094 4.094 13 N -0.294 5.294 14 C 0.008 3.992 15 H 0.068 0.932 16 C -0.145 4.145 17 C -0.228 4.228 18 C -0.212 4.212 19 C 0.075 3.925 20 C -0.002 4.002 21 O -0.370 6.370 22 C -0.188 4.188 23 C -0.200 4.200 24 C -0.017 4.017 25 O -0.268 6.268 26 H 0.084 0.916 27 H 0.203 0.797 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.181 0.819 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.222 0.778 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 21.081 -7.101 2.262 22.360 hybrid contribution 1.173 1.945 1.104 2.525 sum 22.255 -5.156 3.366 23.091 Atomic orbital electron populations 1.69618 1.05635 1.27486 1.49367 1.25034 0.95483 0.97944 0.97650 0.86679 0.79727 0.84083 0.78947 1.19543 1.20180 1.19580 1.19438 0.79227 0.96646 1.48048 0.86254 1.42196 1.07537 1.06119 1.67055 1.19713 0.88187 0.84593 0.83965 1.90557 1.69404 1.30927 1.53829 1.22039 0.94995 0.90990 1.01329 1.60157 1.02322 1.10798 1.56076 1.21319 0.89371 0.94505 0.94010 0.93173 1.22169 0.99790 0.95061 0.97439 1.23060 0.92178 1.04240 1.03306 1.23020 0.98650 0.99705 0.99834 1.22138 0.92210 0.87872 0.90315 1.22420 0.94761 0.86078 0.96918 1.86486 1.28365 1.39642 1.82494 1.23196 0.97638 1.01054 0.96958 1.23445 0.98233 0.98524 0.99840 1.23281 0.92588 0.93103 0.92728 1.88442 1.65086 1.36468 1.36776 0.91613 0.79722 0.94161 0.88780 0.81944 0.86884 0.89313 0.89010 0.88831 0.88575 0.92226 0.93100 0.77755 0.89305 0.90668 0.88919 0.89874 0.89664 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.39 27.74 -169.99 -4.71 14.68 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.49 16 9 N -0.59 -14.15 5.09 -10.96 -0.06 -14.20 16 10 C 0.45 10.34 7.81 -10.98 -0.09 10.26 16 11 O -0.57 -15.24 15.64 5.55 0.09 -15.16 16 12 C 0.04 0.67 5.81 -4.98 -0.03 0.64 16 13 N -0.66 -10.79 5.91 -107.99 -0.64 -11.43 16 14 C 0.12 1.54 1.53 -67.71 -0.10 1.43 16 15 H 0.05 0.60 7.45 -51.93 -0.39 0.21 16 16 C -0.13 -1.55 4.02 -90.62 -0.36 -1.91 16 17 C -0.19 -1.85 9.97 -26.69 -0.27 -2.11 16 18 C -0.18 -2.07 9.55 -26.69 -0.25 -2.32 16 19 C 0.12 1.41 0.54 -89.89 -0.05 1.36 16 20 C 0.08 0.76 5.94 37.16 0.22 0.98 16 21 O -0.57 -5.46 12.66 -44.70 -0.57 -6.02 16 22 C -0.15 -1.76 5.47 -24.78 -0.14 -1.90 16 23 C -0.16 -2.04 6.57 -24.48 -0.16 -2.20 16 24 C 0.06 0.77 7.78 38.18 0.30 1.07 16 25 O -0.35 -5.06 9.78 -44.70 -0.44 -5.50 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 28 H 0.04 0.61 7.89 -51.93 -0.41 0.20 16 29 H 0.09 1.48 5.06 -51.93 -0.26 1.22 16 30 H 0.35 6.09 3.66 -39.29 -0.14 5.95 16 31 H 0.11 1.55 7.68 -51.93 -0.40 1.15 16 32 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.17 5.60 -51.93 -0.29 0.88 16 36 H 0.06 0.57 7.06 -51.93 -0.37 0.21 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.38 1.85 9.12 45.56 0.42 2.26 16 39 H 0.09 0.97 7.20 -51.93 -0.37 0.60 16 40 H 0.07 0.87 7.77 -51.93 -0.40 0.46 16 41 H 0.09 1.40 5.81 -51.93 -0.30 1.10 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -33.85 344.84 -7.20 -41.05 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -5.67 Total: 18.87 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.18 Total: -2.46 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.08 Total: -50.66 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.92 Total: -26.68 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.85 -7.20 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339770808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.213 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds