Wall clock time and date at job start Fri Apr 10 2020 17:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00312 * 2 1 4 4 H 1.48497 * 109.46777 * 270.00098 * 3 2 1 5 5 H 1.48500 * 109.46758 * 30.00011 * 3 2 1 6 6 H 1.48493 * 109.47135 * 149.99841 * 3 2 1 7 7 C 1.38957 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99537 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99933 * 179.97438 * 7 2 1 10 10 C 1.34783 * 119.99898 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99671 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00184 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47268 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00060 * 186.20208 * 13 12 10 15 15 H 1.09006 * 109.46920 * 32.25678 * 14 13 12 16 16 C 1.53004 * 109.47280 * 272.25530 * 14 13 12 17 17 C 1.53005 * 117.49584 * 133.44717 * 16 14 13 18 18 C 1.52998 * 117.49509 * 64.78964 * 16 14 13 19 19 C 1.52999 * 109.47047 * 152.25529 * 14 13 12 20 20 C 1.53003 * 109.89842 * 179.76496 * 19 14 13 21 21 O 1.42894 * 109.47192 * 179.76669 * 20 19 14 22 22 C 1.54384 * 109.83197 * 300.69631 * 19 14 13 23 23 C 1.55308 * 102.25188 * 98.15532 * 22 19 14 24 24 C 1.54944 * 100.94019 * 34.13681 * 23 22 19 25 25 O 1.43236 * 109.83106 * 58.83105 * 19 14 13 26 26 H 0.96995 * 119.99984 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00580 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.47300 * 59.99785 * 12 10 9 29 29 H 1.09006 * 109.47078 * 300.00061 * 12 10 9 30 30 H 1.00894 * 111.00104 * 310.16429 * 13 12 10 31 31 H 1.08997 * 115.54632 * 279.12037 * 16 14 13 32 32 H 1.09001 * 117.49792 * 0.02562 * 17 16 14 33 33 H 1.09003 * 117.49134 * 145.02266 * 17 16 14 34 34 H 1.09000 * 117.49458 * 214.97589 * 18 16 14 35 35 H 1.08994 * 117.50511 * 0.02562 * 18 16 14 36 36 H 1.09000 * 109.46611 * 299.76879 * 20 19 14 37 37 H 1.08997 * 109.47036 * 59.76242 * 20 19 14 38 38 H 0.96699 * 113.99952 * 179.97438 * 21 20 19 39 39 H 1.09001 * 110.84898 * 216.34929 * 22 19 14 40 40 H 1.09003 * 110.84689 * 339.96859 * 22 19 14 41 41 H 1.09002 * 111.12283 * 276.21720 * 23 22 19 42 42 H 1.08999 * 111.15916 * 152.07123 * 23 22 19 43 43 H 1.09007 * 110.30682 * 204.64158 * 24 23 22 44 44 H 1.08994 * 110.30996 * 82.47159 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3707 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0503 -3.7557 0.0006 14 6 7.5112 -3.7975 0.1488 15 1 7.8381 -2.9592 0.7640 16 6 8.1667 -3.7041 -1.2306 17 6 9.3328 -2.7271 -1.3938 18 6 7.9725 -2.4071 -2.0185 19 6 7.9184 -5.1113 0.8190 20 6 9.4396 -5.1677 0.9729 21 8 9.8093 -6.3951 1.6043 22 6 7.2473 -5.2222 2.2049 23 6 6.0179 -6.1225 1.9047 24 6 6.5955 -7.0531 0.8087 25 8 7.4684 -6.2190 0.0303 26 1 -0.4850 0.8400 -0.0004 27 1 3.8648 -0.3634 -0.0004 28 1 5.9241 -1.8569 0.8900 29 1 5.9240 -1.8569 -0.8900 30 1 5.5980 -4.2988 0.7207 31 1 8.2071 -4.6352 -1.7958 32 1 9.6333 -2.1513 -0.5184 33 1 10.1403 -3.0154 -2.0669 34 1 7.8857 -2.4848 -3.1022 35 1 7.3782 -1.6202 -1.5541 36 1 9.9066 -5.1097 -0.0103 37 1 9.7743 -4.3295 1.5841 38 1 10.7618 -6.4994 1.7340 39 1 7.9140 -5.7022 2.9214 40 1 6.9322 -4.2421 2.5629 41 1 5.1844 -5.5340 1.5213 42 1 5.7217 -6.6907 2.7865 43 1 5.7928 -7.4466 0.1851 44 1 7.1576 -7.8690 1.2629 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339770808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:33 Heat of formation + Delta-G solvation = -114.590653 kcal Electronic energy + Delta-G solvation = -25699.165349 eV Core-core repulsion = 22037.846923 eV Total energy + Delta-G solvation = -3661.318425 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55449 -40.20704 -38.41165 -37.27402 -36.16824 -35.33898 -33.77669 -32.98530 -32.25928 -28.94156 -26.70071 -26.41751 -24.62858 -23.23243 -23.00860 -21.75688 -21.33818 -20.72061 -20.21642 -18.72887 -17.74975 -17.50971 -16.96568 -16.71850 -16.62912 -16.30114 -15.94980 -15.50098 -15.38305 -15.13870 -14.85090 -14.59767 -14.39244 -14.02915 -14.01612 -13.66713 -13.38296 -13.15971 -12.89909 -12.80543 -12.63938 -12.43158 -12.17629 -12.05994 -11.97986 -11.76319 -11.67521 -11.53214 -11.08674 -10.96382 -10.75860 -10.46702 -10.27145 -10.25778 -9.29724 -8.42467 -6.03605 1.28963 1.34946 1.43645 1.91557 2.22085 2.56101 2.78197 3.00913 3.13551 3.16202 3.52260 3.63843 3.74973 3.81656 3.98583 4.06893 4.10494 4.19558 4.25085 4.27367 4.32975 4.34066 4.44938 4.52432 4.61551 4.72173 4.78347 4.85110 4.87700 4.89597 4.95295 4.98511 5.13007 5.23619 5.33931 5.42325 5.51606 5.89383 6.03211 6.21067 6.42508 6.58097 6.85844 6.96750 7.37037 7.92900 8.75175 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.004069 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.690470 B = 6879.231356 C = 7696.362621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.588 5.588 10 C 0.447 3.553 11 O -0.613 6.613 12 C 0.053 3.947 13 N -0.678 5.678 14 C 0.120 3.880 15 H 0.072 0.928 16 C -0.142 4.142 17 C -0.157 4.157 18 C -0.191 4.191 19 C 0.108 3.892 20 C 0.082 3.918 21 O -0.582 6.582 22 C -0.145 4.145 23 C -0.162 4.162 24 C 0.058 3.942 25 O -0.373 6.373 26 H 0.280 0.720 27 H 0.390 0.610 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.347 0.653 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.434 -4.023 3.936 27.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.498 6.498 12 C -0.079 4.079 13 N -0.316 5.316 14 C 0.010 3.990 15 H 0.090 0.910 16 C -0.161 4.161 17 C -0.194 4.194 18 C -0.228 4.228 19 C 0.068 3.932 20 C 0.004 3.996 21 O -0.391 6.391 22 C -0.182 4.182 23 C -0.200 4.200 24 C -0.018 4.018 25 O -0.292 6.292 26 H 0.089 0.911 27 H 0.225 0.775 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.173 0.827 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.246 0.754 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 25.247 -4.811 3.056 25.882 hybrid contribution -0.160 1.057 0.829 1.353 sum 25.086 -3.754 3.885 25.661 Atomic orbital electron populations 1.69800 1.08151 1.29296 1.50134 1.26115 0.96461 1.02694 0.95961 0.85377 0.79518 0.76720 0.79995 1.18157 1.19869 1.15401 1.19010 0.81429 0.94975 1.50496 0.92695 1.42002 1.05844 1.07480 1.67643 1.20923 0.90849 0.83421 0.81284 1.90539 1.71288 1.32774 1.55198 1.21982 0.89764 0.92332 1.03814 1.60182 1.04736 1.10187 1.56512 1.21420 0.86941 0.95717 0.94901 0.91029 1.22041 1.02355 0.94625 0.97036 1.23143 0.91188 1.01622 1.03493 1.23072 1.00749 0.99228 0.99728 1.22341 0.94113 0.86826 0.89945 1.22333 0.92621 0.87008 0.97633 1.86428 1.30535 1.39684 1.82414 1.23181 0.97003 1.00947 0.97086 1.23383 0.97837 0.98587 1.00182 1.23301 0.92458 0.93460 0.92623 1.88410 1.65350 1.37351 1.38073 0.91092 0.77486 0.90770 0.86706 0.82704 0.89076 0.87319 0.87624 0.89235 0.88657 0.92082 0.90645 0.75353 0.88162 0.90384 0.91971 0.88298 0.90824 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.96 21.66 0.30 -56.21 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.96 38.75 27.74 68.60 1.90 40.65 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 7 C -0.33 -19.53 10.16 84.04 0.85 -18.67 16 8 H 0.05 3.88 7.39 -2.91 -0.02 3.85 16 9 N -0.59 -28.12 5.09 -306.97 -1.56 -29.69 16 10 C 0.45 20.75 7.81 87.66 0.68 21.44 16 11 O -0.61 -34.78 15.64 -3.07 -0.05 -34.82 16 12 C 0.05 1.71 5.81 85.56 0.50 2.21 16 13 N -0.68 -21.80 5.91 -495.56 -2.93 -24.72 16 14 C 0.12 2.83 1.53 44.92 0.07 2.90 16 15 H 0.07 1.39 7.45 -2.38 -0.02 1.38 16 16 C -0.14 -3.17 4.02 -10.79 -0.04 -3.22 16 17 C -0.16 -2.42 9.97 30.62 0.31 -2.12 16 18 C -0.19 -4.00 9.55 30.62 0.29 -3.71 16 19 C 0.11 2.44 0.54 -10.32 -0.01 2.44 16 20 C 0.08 1.36 5.94 71.98 0.43 1.79 16 21 O -0.58 -9.60 12.66 -139.92 -1.77 -11.37 16 22 C -0.14 -3.14 5.47 31.86 0.17 -2.96 16 23 C -0.16 -4.09 6.57 32.05 0.21 -3.88 16 24 C 0.06 1.52 7.78 72.65 0.56 2.09 16 25 O -0.37 -10.71 9.78 -139.92 -1.37 -12.07 16 26 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.39 15.37 5.76 -92.71 -0.53 14.83 16 28 H 0.07 1.93 7.89 -2.38 -0.02 1.91 16 29 H 0.12 3.28 5.06 -2.38 -0.01 3.26 16 30 H 0.35 12.06 3.66 -89.70 -0.33 11.73 16 31 H 0.09 2.45 7.68 -2.39 -0.02 2.43 16 32 H 0.11 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 1.99 5.60 -2.39 -0.01 1.98 16 36 H 0.06 0.98 7.06 -2.39 -0.02 0.97 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.40 2.66 9.12 -74.06 -0.68 1.98 16 39 H 0.10 1.94 7.20 -2.39 -0.02 1.92 16 40 H 0.08 1.63 7.77 -2.39 -0.02 1.61 16 41 H 0.06 1.98 5.81 -2.39 -0.01 1.96 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -79.52 344.84 -1.52 -81.05 By element: Atomic # 1 Polarization: 49.73 SS G_CDS: -0.55 Total: 49.18 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 4.50 Total: -1.99 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -4.19 Total: -110.62 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -3.19 Total: -58.27 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 1.90 Total: 40.65 kcal Total: -79.52 -1.52 -81.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339770808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.542 kcal (2) G-P(sol) polarization free energy of solvation -79.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds