Wall clock time and date at job start Fri Apr 10 2020 17:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99721 * 2 1 4 4 H 1.48502 * 109.46926 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47393 * 299.99697 * 3 2 1 6 6 H 1.48496 * 109.47078 * 60.00231 * 3 2 1 7 7 C 1.37871 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 173.55717 * 7 2 1 9 9 C 1.50706 * 120.00367 * 353.55719 * 7 2 1 10 10 C 1.52993 * 115.54983 * 85.40539 * 9 7 2 11 11 N 1.46505 * 109.47519 * 65.13922 * 10 9 7 12 12 C 1.34769 * 120.00181 * 178.27842 * 11 10 9 13 13 O 1.21586 * 120.00054 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00076 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00284 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47138 * 180.02562 * 15 14 12 17 17 H 1.08993 * 109.46822 * 304.99792 * 16 15 14 18 18 O 1.42896 * 109.46978 * 64.99927 * 16 15 14 19 19 C 1.52998 * 109.46996 * 184.99830 * 16 15 14 20 20 H 1.08998 * 110.80522 * 300.70130 * 19 16 15 21 21 C 1.54806 * 110.90730 * 177.07031 * 19 16 15 22 22 C 1.54101 * 104.19111 * 220.91969 * 21 19 16 23 23 O 1.43749 * 107.29151 * 357.97402 * 22 21 19 24 24 C 1.44416 * 106.99898 * 26.48445 * 23 22 21 25 25 C 1.53003 * 117.49676 * 231.07472 * 9 7 2 26 26 C 1.53000 * 117.49820 * 299.73424 * 9 7 2 27 27 H 0.96991 * 119.99848 * 5.05943 * 1 2 3 28 28 H 1.09001 * 109.47138 * 305.14245 * 10 9 7 29 29 H 1.08996 * 109.47538 * 185.14277 * 10 9 7 30 30 H 0.97006 * 119.99523 * 358.28336 * 11 10 9 31 31 H 0.97006 * 119.99628 * 0.02562 * 14 12 11 32 32 H 1.08993 * 109.47206 * 59.99846 * 15 14 12 33 33 H 1.09001 * 109.46639 * 299.99993 * 15 14 12 34 34 H 0.96698 * 114.00514 * 60.00194 * 18 16 15 35 35 H 1.08997 * 110.48976 * 339.60181 * 21 19 16 36 36 H 1.09006 * 110.48706 * 102.11175 * 21 19 16 37 37 H 1.08999 * 109.87809 * 117.39244 * 22 21 19 38 38 H 1.08995 * 109.88294 * 238.54754 * 22 21 19 39 39 H 1.09000 * 110.65114 * 201.48441 * 24 23 22 40 40 H 1.09004 * 110.60127 * 78.47607 * 24 23 22 41 41 H 1.08998 * 117.49404 * 215.00202 * 25 9 7 42 42 H 1.09001 * 117.49992 * 0.02562 * 25 9 7 43 43 H 1.09004 * 117.49571 * 359.97438 * 26 9 7 44 44 H 1.08997 * 117.49626 * 144.97227 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1970 -0.1044 9 6 1.2582 -2.4950 0.1476 10 6 0.7022 -3.0870 -1.1490 11 7 1.8113 -3.4600 -2.0306 12 6 1.5602 -4.0373 -3.2222 13 8 0.4131 -4.2482 -3.5659 14 7 2.5805 -4.3809 -4.0330 15 6 2.3075 -5.0080 -5.3286 16 6 3.6287 -5.2951 -6.0447 17 1 4.2081 -4.3750 -6.1207 18 8 4.3710 -6.2657 -5.3039 19 6 3.3417 -5.8344 -7.4475 20 1 2.7516 -6.7494 -7.3972 21 6 4.6572 -6.0676 -8.2295 22 6 4.3433 -5.5701 -9.6538 23 8 2.9681 -5.1516 -9.6668 24 6 2.6316 -4.7653 -8.3165 25 6 1.7471 -3.4728 1.2180 26 6 0.4418 -2.7006 1.4251 27 1 -0.4849 0.8367 -0.0741 28 1 0.0756 -2.3470 -1.6469 29 1 0.1076 -3.9711 -0.9192 30 1 2.7265 -3.2915 -1.7565 31 1 3.4957 -4.2130 -3.7586 32 1 1.7024 -4.3361 -5.9371 33 1 1.7682 -5.9425 -5.1734 34 1 3.9150 -7.1116 -5.1966 35 1 5.4690 -5.4861 -7.7925 36 1 4.9116 -7.1275 -8.2408 37 1 4.9892 -4.7283 -9.9032 38 1 4.4914 -6.3784 -10.3698 39 1 1.5529 -4.8013 -8.1639 40 1 3.0188 -3.7709 -8.0943 41 1 1.6726 -4.5379 0.9984 42 1 2.6083 -3.1750 1.8161 43 1 0.4448 -1.8950 2.1594 44 1 -0.4916 -3.2572 1.3417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574505260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:53 Heat of formation + Delta-G solvation = -110.562285 kcal Electronic energy + Delta-G solvation = -24263.626865 eV Core-core repulsion = 20602.483123 eV Total energy + Delta-G solvation = -3661.143742 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.20565 -39.30502 -37.58273 -36.68706 -34.04788 -33.24226 -32.70700 -31.96753 -30.26262 -27.78933 -25.98621 -25.02196 -23.69944 -22.28597 -21.31380 -21.17277 -20.17095 -19.37178 -17.83432 -17.25996 -17.08969 -16.26837 -16.07501 -15.60960 -15.33259 -15.10733 -14.72977 -14.55051 -14.07180 -13.91021 -13.70321 -13.51583 -13.26820 -12.83979 -12.64201 -12.36149 -12.05563 -11.78362 -11.67097 -11.55088 -11.18436 -11.02663 -11.00315 -10.91233 -10.52637 -10.38055 -10.26882 -10.02758 -9.75736 -9.51541 -8.97365 -8.87624 -8.50108 -8.25387 -7.97208 -6.07990 -4.16561 3.09636 3.24389 3.33505 3.35430 3.57097 3.77417 3.89544 4.18727 4.26855 4.34948 4.51544 4.68054 4.72785 4.80405 4.93810 4.95827 5.06508 5.20287 5.35858 5.37682 5.39272 5.43716 5.57663 5.59959 5.65494 5.83930 6.03556 6.34778 6.47412 6.48968 6.59914 6.69798 6.71661 6.85571 7.09188 7.26122 7.32836 7.41570 7.47038 7.59894 7.81433 8.34247 8.65629 8.84485 9.19375 9.50221 10.99897 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.002956 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.642083 B = 9468.663728 C =10058.842816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.697 3.303 13 O -0.606 6.606 14 N -0.750 5.750 15 C 0.109 3.891 16 C 0.107 3.893 17 H 0.108 0.892 18 O -0.554 6.554 19 C -0.152 4.152 20 H 0.093 0.907 21 C -0.143 4.143 22 C 0.044 3.956 23 O -0.378 6.378 24 C 0.051 3.949 25 C -0.210 4.210 26 C -0.148 4.148 27 H 0.261 0.739 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.396 0.604 31 H 0.397 0.603 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.377 0.623 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.389 -11.932 -14.035 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.371 5.371 12 C 0.397 3.603 13 O -0.485 6.485 14 N -0.407 5.407 15 C -0.016 4.016 16 C 0.047 3.953 17 H 0.126 0.874 18 O -0.359 6.359 19 C -0.171 4.171 20 H 0.111 0.889 21 C -0.181 4.181 22 C -0.033 4.033 23 O -0.297 6.297 24 C -0.026 4.026 25 C -0.248 4.248 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.230 0.770 31 H 0.231 0.769 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.426 -11.488 -14.418 20.269 hybrid contribution 0.913 0.706 0.394 1.219 sum 9.339 -10.782 -14.024 20.003 Atomic orbital electron populations 1.69988 1.05878 1.26809 1.48314 1.24991 0.94806 0.98950 0.94328 0.86577 0.80151 0.83866 0.77627 1.19742 1.21058 1.20959 1.20377 0.92840 0.88629 1.51898 0.92184 1.19045 0.98603 0.93907 0.85755 1.20848 0.86612 0.96629 0.90054 1.45140 1.11355 1.63489 1.17140 1.16041 0.84502 0.78892 0.80855 1.90871 1.19905 1.62083 1.75681 1.44943 1.08749 1.67783 1.19270 1.21808 0.96523 0.98699 0.84602 1.22150 0.92284 0.92555 0.88263 0.87427 1.86599 1.46951 1.26476 1.75876 1.23408 0.97552 1.00610 0.95549 0.88904 1.22895 0.97633 1.02888 0.94662 1.23202 0.83650 0.99218 0.97214 1.88900 1.27132 1.85583 1.28061 1.23643 1.01084 0.96850 0.81017 1.23019 0.98634 0.95682 1.07443 1.22493 0.92296 1.01078 1.02717 0.92898 0.91220 0.94753 0.77036 0.76866 0.90939 0.91569 0.77486 0.90075 0.90283 0.92301 0.89910 0.88250 0.91555 0.91650 0.90395 0.89818 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.27 12.91 55.43 0.72 -23.56 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.50 -12.83 8.63 -34.44 -0.30 -13.12 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.03 0.65 1.38 -155.66 -0.21 0.44 16 10 C 0.18 4.18 5.50 -4.04 -0.02 4.16 16 11 N -0.72 -14.08 5.48 -65.23 -0.36 -14.44 16 12 C 0.70 13.25 8.57 -86.92 -0.74 12.50 16 13 O -0.61 -13.86 16.34 5.29 0.09 -13.77 16 14 N -0.75 -10.31 5.51 -65.23 -0.36 -10.67 16 15 C 0.11 1.20 5.22 -4.04 -0.02 1.18 16 16 C 0.11 0.85 2.40 -26.73 -0.06 0.79 16 17 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 18 O -0.55 -4.55 13.05 -35.23 -0.46 -5.01 16 19 C -0.15 -1.08 2.86 -88.61 -0.25 -1.33 16 20 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 21 C -0.14 -0.93 6.38 -25.20 -0.16 -1.10 16 22 C 0.04 0.32 7.70 37.73 0.29 0.61 16 23 O -0.38 -3.84 11.52 -35.23 -0.41 -4.25 16 24 C 0.05 0.43 6.24 38.21 0.24 0.67 16 25 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 26 C -0.15 -3.37 9.42 -26.69 -0.25 -3.62 16 27 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 28 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 30 H 0.40 7.07 8.38 -40.82 -0.34 6.72 16 31 H 0.40 4.70 8.49 -40.82 -0.35 4.35 16 32 H 0.07 0.85 7.14 -51.93 -0.37 0.48 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.38 2.09 9.05 45.56 0.41 2.51 16 35 H 0.08 0.53 7.86 -51.93 -0.41 0.13 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.82 7.95 -51.93 -0.41 0.40 16 40 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -31.87 366.01 -8.65 -40.52 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.50 Total: 11.76 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.86 Total: -1.61 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.00 Total: -48.66 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.78 Total: -23.03 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.87 -8.65 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574505260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.039 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds