Wall clock time and date at job start Fri Apr 10 2020 17:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47108 * 273.93722 * 3 2 1 5 5 H 1.48500 * 109.46944 * 33.93578 * 3 2 1 6 6 H 1.48493 * 109.46628 * 153.93676 * 3 2 1 7 7 C 1.37877 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.07987 * 120.00384 * 353.31630 * 7 2 1 9 9 C 1.50703 * 119.99394 * 173.04454 * 7 2 1 10 10 C 1.52995 * 115.55153 * 299.07301 * 9 7 2 11 11 N 1.46503 * 109.47097 * 294.90535 * 10 9 7 12 12 C 1.34780 * 120.00284 * 184.37693 * 11 10 9 13 13 O 1.21582 * 119.99675 * 4.84962 * 12 11 10 14 14 N 1.34776 * 119.99906 * 184.85350 * 12 11 10 15 15 C 1.46500 * 119.99802 * 184.80087 * 14 12 11 16 16 C 1.52999 * 109.47198 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.46978 * 305.00072 * 16 15 14 18 18 O 1.42900 * 109.47201 * 64.99666 * 16 15 14 19 19 C 1.53000 * 109.47258 * 185.00136 * 16 15 14 20 20 H 1.09000 * 110.45909 * 57.39073 * 19 16 15 21 21 C 1.54510 * 110.51032 * 180.02562 * 19 16 15 22 22 C 1.54479 * 104.06337 * 118.64524 * 21 19 16 23 23 O 1.44421 * 104.80712 * 23.97327 * 22 21 19 24 24 C 1.44425 * 105.27600 * 319.49422 * 23 22 21 25 25 C 1.53000 * 117.49914 * 153.36127 * 9 7 2 26 26 C 1.52995 * 60.00048 * 252.51110 * 25 9 7 27 27 H 0.97002 * 119.99861 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47528 * 54.90321 * 10 9 7 29 29 H 1.08997 * 109.47548 * 174.90866 * 10 9 7 30 30 H 0.97005 * 119.99655 * 4.38184 * 11 10 9 31 31 H 0.97000 * 119.99995 * 4.80183 * 14 12 11 32 32 H 1.09002 * 109.47166 * 299.99871 * 15 14 12 33 33 H 1.08997 * 109.47209 * 59.99893 * 15 14 12 34 34 H 0.96705 * 113.99904 * 59.99967 * 18 16 15 35 35 H 1.09006 * 110.50783 * 237.28532 * 21 19 16 36 36 H 1.08990 * 110.51170 * 359.97438 * 21 19 16 37 37 H 1.08998 * 110.37142 * 142.80962 * 22 21 19 38 38 H 1.09004 * 110.36944 * 265.14711 * 22 21 19 39 39 H 1.09001 * 110.37233 * 281.67651 * 24 23 22 40 40 H 1.08999 * 110.37660 * 159.34037 * 24 23 22 41 41 H 1.09008 * 117.49621 * 0.02562 * 25 9 7 42 42 H 1.08996 * 117.50301 * 145.01719 * 25 9 7 43 43 H 1.08997 * 117.49612 * 252.50704 * 26 25 9 44 44 H 1.09005 * 117.52027 * 107.48199 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4134 2.0945 -1.3968 5 1 1.4907 2.6272 0.7816 6 1 3.5858 1.4175 0.6151 7 6 2.0045 -1.1941 -0.0005 8 1 1.4701 -2.1262 0.1079 9 6 3.5032 -1.1988 -0.1586 10 6 4.0308 -0.6038 -1.4657 11 7 3.5936 -1.4333 -2.5913 12 6 4.0149 -1.1510 -3.8401 13 8 4.8262 -0.2640 -4.0219 14 7 3.5366 -1.8520 -4.8872 15 6 4.0711 -1.6177 -6.2309 16 6 3.3619 -2.5352 -7.2290 17 1 3.4531 -3.5701 -6.8994 18 8 1.9799 -2.1794 -7.3043 19 6 4.0042 -2.3810 -8.6090 20 1 5.0700 -2.6043 -8.5603 21 6 3.3048 -3.2980 -9.6372 22 6 2.7328 -2.3184 -10.6858 23 8 3.5555 -1.1367 -10.5745 24 6 3.7719 -0.9558 -9.1580 25 6 4.2735 -2.3753 0.4442 26 6 4.3471 -0.9956 1.1013 27 1 -0.4850 0.8401 0.0004 28 1 3.6427 0.4074 -1.5874 29 1 5.1200 -0.5741 -1.4379 30 1 3.0009 -2.1857 -2.4378 31 1 2.8386 -2.5117 -4.7510 32 1 3.9043 -0.5778 -6.5120 33 1 5.1403 -1.8292 -6.2387 34 1 1.8232 -1.2695 -7.5919 35 1 4.0252 -3.9735 -10.0987 36 1 2.5018 -3.8614 -9.1624 37 1 2.8131 -2.7438 -11.6861 38 1 1.6941 -2.0805 -10.4560 39 1 2.8927 -0.5090 -8.6938 40 1 4.6506 -0.3345 -8.9846 41 1 3.6962 -3.1462 0.9548 42 1 5.1563 -2.7259 -0.0904 43 1 5.2783 -0.4385 0.9990 44 1 3.8183 -0.8581 2.0446 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574505263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:06 Heat of formation + Delta-G solvation = -103.321137 kcal Electronic energy + Delta-G solvation = -24586.635840 eV Core-core repulsion = 20925.806098 eV Total energy + Delta-G solvation = -3660.829742 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42286 -39.42659 -37.51102 -36.95161 -34.09182 -33.36442 -32.65525 -32.19853 -30.11731 -28.04964 -26.47270 -25.05563 -24.01715 -22.31485 -21.61046 -20.92223 -20.21329 -19.29264 -17.91134 -17.42461 -16.98340 -16.57151 -16.28094 -15.60748 -15.38271 -15.27547 -15.05505 -14.62932 -14.18642 -13.98054 -13.84726 -13.31390 -13.19031 -12.93997 -12.73867 -12.29397 -12.26683 -12.15932 -12.01019 -11.66307 -11.21415 -11.06397 -11.03315 -10.68872 -10.58155 -10.36940 -10.25622 -10.11162 -9.84197 -9.50842 -9.18943 -8.96942 -8.80181 -8.50361 -8.14303 -6.18816 -4.20754 3.02206 3.29361 3.38878 3.44758 3.58218 3.66589 3.97093 4.08555 4.34360 4.38334 4.43297 4.60679 4.66191 4.74223 4.86843 4.92493 5.03555 5.10062 5.21163 5.35313 5.38850 5.41539 5.56022 5.58494 5.66496 5.68435 5.78760 5.96918 6.13940 6.25640 6.39966 6.44236 6.49607 6.66187 6.70994 6.93307 7.07457 7.18961 7.26398 7.42265 7.66774 8.40228 8.54447 8.82940 9.07084 9.45114 10.92130 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.003135 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.958893 B = 8928.547061 C = 9233.667117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.251 1.251 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.172 3.828 11 N -0.717 5.717 12 C 0.700 3.300 13 O -0.608 6.608 14 N -0.747 5.747 15 C 0.109 3.891 16 C 0.104 3.896 17 H 0.111 0.889 18 O -0.552 6.552 19 C -0.152 4.152 20 H 0.097 0.903 21 C -0.146 4.146 22 C 0.044 3.956 23 O -0.375 6.375 24 C 0.045 3.955 25 C -0.180 4.180 26 C -0.187 4.187 27 H 0.266 0.734 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.403 0.597 31 H 0.400 0.600 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.375 0.625 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 -6.868 -17.496 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.697 3.303 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.174 1.174 7 C -0.527 4.527 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.048 3.952 11 N -0.371 5.371 12 C 0.400 3.600 13 O -0.488 6.488 14 N -0.405 5.405 15 C -0.017 4.017 16 C 0.044 3.956 17 H 0.129 0.871 18 O -0.359 6.359 19 C -0.172 4.172 20 H 0.115 0.885 21 C -0.183 4.183 22 C -0.033 4.033 23 O -0.293 6.293 24 C -0.031 4.031 25 C -0.217 4.217 26 C -0.225 4.225 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.238 0.762 31 H 0.235 0.765 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.214 -6.396 -17.608 20.075 hybrid contribution -0.201 0.771 0.181 0.817 sum 7.013 -5.625 -17.427 19.610 Atomic orbital electron populations 1.69901 1.06386 1.27287 1.49241 1.24913 0.94505 0.99094 0.93497 0.87008 0.81405 0.83553 0.78368 1.20431 1.21914 1.17429 1.20241 0.86763 0.94630 1.51071 0.90425 1.19604 0.94704 0.98385 0.89104 1.20935 0.96526 0.93257 0.84458 1.44984 1.52655 1.34757 1.04655 1.16008 0.81386 0.81796 0.80854 1.90862 1.38306 1.34583 1.85003 1.44916 1.44111 1.45351 1.06083 1.21813 0.98427 0.99704 0.81728 1.22162 0.81599 0.99787 0.92061 0.87102 1.86630 1.23469 1.35203 1.90619 1.23206 1.01977 0.96366 0.95655 0.88490 1.22921 1.00873 0.98434 0.96120 1.23444 0.94780 0.85196 0.99894 1.89145 1.71019 1.46038 1.23127 1.23499 1.01629 0.96117 0.81884 1.22767 1.01726 0.91841 1.05394 1.23038 1.01206 0.99130 0.99140 0.92464 0.92905 0.93364 0.76199 0.76520 0.91503 0.90994 0.77543 0.90645 0.89444 0.89203 0.91912 0.92193 0.88447 0.89675 0.90901 0.91114 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 2 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 3 Si 0.87 21.46 24.81 -169.99 -4.22 17.25 16 4 H -0.28 -7.04 6.97 56.52 0.39 -6.65 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.25 -5.84 5.97 56.52 0.34 -5.50 16 7 C -0.49 -12.83 9.17 -34.44 -0.32 -13.15 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 9 C -0.02 -0.37 0.85 -155.66 -0.13 -0.50 16 10 C 0.17 3.75 5.11 -4.04 -0.02 3.73 16 11 N -0.72 -13.94 5.48 -65.23 -0.36 -14.30 16 12 C 0.70 13.19 8.55 -86.92 -0.74 12.45 16 13 O -0.61 -13.57 16.34 5.29 0.09 -13.48 16 14 N -0.75 -10.41 5.51 -65.23 -0.36 -10.77 16 15 C 0.11 1.20 5.07 -4.04 -0.02 1.18 16 16 C 0.10 0.85 2.66 -26.73 -0.07 0.77 16 17 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 18 O -0.55 -5.14 12.72 -35.23 -0.45 -5.59 16 19 C -0.15 -1.09 3.02 -89.05 -0.27 -1.36 16 20 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 21 C -0.15 -0.97 6.51 -25.16 -0.16 -1.14 16 22 C 0.04 0.32 7.63 37.93 0.29 0.61 16 23 O -0.37 -3.72 11.65 -35.23 -0.41 -4.13 16 24 C 0.05 0.37 6.25 37.94 0.24 0.60 16 25 C -0.18 -3.45 9.96 -26.73 -0.27 -3.71 16 26 C -0.19 -3.81 8.44 -26.73 -0.23 -4.03 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.05 1.28 4.55 -51.93 -0.24 1.04 16 29 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 30 H 0.40 7.31 8.36 -40.82 -0.34 6.96 16 31 H 0.40 4.92 8.50 -40.82 -0.35 4.57 16 32 H 0.07 0.79 7.61 -51.93 -0.40 0.39 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.38 2.88 6.84 45.56 0.31 3.19 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.59 7.51 -51.93 -0.39 0.20 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.44 5.82 -51.93 -0.30 0.14 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -32.81 352.38 -7.82 -40.63 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.40 Total: 12.85 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.80 Total: -2.32 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.06 Total: -50.51 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.77 Total: -23.20 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.22 Total: 17.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.81 -7.82 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574505263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.689 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds