Wall clock time and date at job start Fri Apr 10 2020 17:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00038 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.46961 * 120.59075 * 359.72069 * 15 13 12 17 17 C 1.53814 * 108.39772 * 124.76035 * 16 15 13 18 18 N 1.46964 * 108.57935 * 49.63612 * 17 16 15 19 19 C 1.34778 * 120.59419 * 124.62525 * 18 17 16 20 20 O 1.21278 * 119.99720 * 180.02562 * 19 18 17 21 21 C 1.50704 * 119.99861 * 0.02562 * 19 18 17 22 22 O 1.42896 * 109.47014 * 179.97438 * 21 19 18 23 23 C 1.46958 * 118.80942 * 304.64842 * 18 17 16 24 24 C 1.46964 * 120.59577 * 180.02562 * 15 13 12 25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 34 34 H 1.09005 * 109.61049 * 244.54214 * 16 15 13 35 35 H 1.09000 * 109.61527 * 5.05260 * 16 15 13 36 36 H 1.09001 * 109.73977 * 289.84709 * 17 16 15 37 37 H 1.09001 * 109.67456 * 169.38886 * 17 16 15 38 38 H 1.08998 * 109.47072 * 299.99395 * 21 19 18 39 39 H 1.08997 * 109.47172 * 59.99862 * 21 19 18 40 40 H 0.96697 * 114.00278 * 179.97438 * 22 21 19 41 41 H 1.09002 * 109.61381 * 295.48101 * 23 18 17 42 42 H 1.09004 * 109.60866 * 174.97214 * 23 18 17 43 43 H 1.08996 * 109.60881 * 354.94515 * 24 15 13 44 44 H 1.09000 * 109.61086 * 115.28808 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7208 -7.4551 -0.0018 14 8 0.5079 -7.4551 -0.0018 15 7 2.3946 -8.6224 -0.0018 16 6 3.8641 -8.6376 -0.0080 17 6 4.3459 -9.4718 1.1911 18 7 3.6243 -10.7521 1.1910 19 6 4.2982 -11.9193 1.1901 20 8 3.6917 -12.9696 1.1896 21 6 5.8052 -11.9194 1.1897 22 8 6.2815 -13.2666 1.1893 23 6 2.1548 -10.7368 1.1915 24 6 1.6729 -9.9026 -0.0024 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6040 -0.8921 30 1 0.8543 -5.0449 0.8894 31 1 0.8525 -5.0447 -0.8905 32 1 3.1003 -6.0924 -0.8922 33 1 3.1016 -6.0924 0.8877 34 1 4.2214 -9.0850 -0.9355 35 1 4.2410 -7.6185 0.0784 36 1 4.1411 -8.9364 2.1182 37 1 5.4168 -9.6554 1.1038 38 1 6.1683 -11.4051 0.2999 39 1 6.1688 -11.4061 2.0798 40 1 7.2454 -13.3431 1.1886 41 1 1.7939 -10.2914 2.1186 42 1 1.7783 -11.7557 1.1014 43 1 0.6023 -9.7191 0.0877 44 1 1.8758 -10.4365 -0.9308 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588660313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:25 Heat of formation + Delta-G solvation = -125.493300 kcal Electronic energy + Delta-G solvation = -23873.172618 eV Core-core repulsion = 20211.381418 eV Total energy + Delta-G solvation = -3661.791200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92166 -39.73370 -37.55294 -36.71773 -34.99825 -34.39853 -32.80900 -32.09633 -29.82761 -29.13143 -27.43993 -25.62996 -24.25855 -23.22013 -21.97652 -20.36929 -19.99451 -18.89840 -18.39965 -17.24740 -16.75324 -16.44975 -16.28913 -16.21245 -15.99553 -15.84708 -14.90540 -14.71161 -14.59209 -14.47965 -13.93296 -13.60030 -13.22430 -12.99137 -12.89346 -12.61603 -12.22224 -12.10356 -12.07695 -11.82058 -11.64838 -11.54226 -10.99972 -10.80857 -10.57254 -10.56102 -10.43978 -10.17493 -9.87876 -9.67056 -9.62467 -9.25689 -9.01860 -8.72647 -8.32250 -5.97011 -3.99820 2.10018 2.15614 2.57901 2.76574 3.33354 3.38132 3.39914 3.63370 4.12689 4.18183 4.26951 4.46291 4.47962 4.56250 4.57102 4.61983 4.74003 4.87067 4.94317 5.14237 5.22585 5.24606 5.27396 5.36733 5.38178 5.53527 5.75853 5.90231 6.08038 6.12609 6.26099 6.49810 6.74209 6.79322 6.96449 7.00172 7.12384 7.18831 7.67462 7.71414 7.87388 8.03885 8.08513 8.45384 9.07638 9.63789 11.14212 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.032797 B = 0.002229 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.528552 B =12559.660824 C =13248.708420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.516 3.484 14 O -0.530 6.530 15 N -0.623 5.623 16 C 0.092 3.908 17 C 0.089 3.911 18 N -0.613 5.613 19 C 0.514 3.486 20 O -0.518 6.518 21 C 0.060 3.940 22 O -0.549 6.549 23 C 0.100 3.900 24 C 0.098 3.902 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.387 0.613 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.641 -23.525 1.899 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.305 3.695 14 O -0.405 6.405 15 N -0.359 5.359 16 C -0.032 4.032 17 C -0.035 4.035 18 N -0.350 5.350 19 C 0.301 3.699 20 O -0.393 6.393 21 C -0.021 4.021 22 O -0.354 6.354 23 C -0.023 4.023 24 C -0.026 4.026 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.235 0.765 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.844 -24.113 1.901 27.387 hybrid contribution 1.220 1.210 -0.008 1.718 sum 14.064 -22.903 1.893 26.943 Atomic orbital electron populations 1.69967 1.06044 1.26642 1.50749 1.25050 0.94856 0.99244 0.95457 0.86666 0.79568 0.83253 0.78524 1.20290 1.21324 1.20297 1.21233 0.92908 0.91195 1.50622 0.92825 1.19092 0.94060 0.91256 0.97329 1.21643 0.99075 0.93975 1.00019 1.21472 0.97026 0.92675 1.03032 1.21831 1.00189 0.91948 1.03768 1.21182 0.88283 0.85291 0.74722 1.90713 1.14139 1.87049 1.48572 1.48155 1.06390 1.06038 1.75310 1.22222 0.80563 1.02168 0.98224 1.22324 0.96933 0.84430 0.99779 1.48008 1.07143 1.05544 1.74297 1.20388 0.89661 0.83400 0.76482 1.90736 1.69838 1.30752 1.47930 1.21885 0.92173 0.85810 1.02207 1.86586 1.27016 1.24087 1.97697 1.22044 0.78874 1.02466 0.98902 1.21952 0.99108 0.83611 0.97904 0.92969 0.96598 0.96593 0.93492 0.93477 0.91772 0.91765 0.89087 0.89091 0.90659 0.87630 0.89957 0.88608 0.90329 0.90358 0.76496 0.90599 0.87737 0.87539 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.14 -1.65 4.04 -27.89 -0.11 -1.76 16 13 C 0.52 6.68 7.70 -10.99 -0.08 6.59 16 14 O -0.53 -9.18 15.39 5.55 0.09 -9.09 16 15 N -0.62 -5.88 2.94 -172.19 -0.51 -6.38 16 16 C 0.09 0.51 6.53 -3.37 -0.02 0.49 16 17 C 0.09 0.39 6.52 -3.37 -0.02 0.37 16 18 N -0.61 -4.57 2.95 -172.19 -0.51 -5.08 16 19 C 0.51 4.78 7.77 -10.98 -0.09 4.69 16 20 O -0.52 -7.34 15.90 -14.35 -0.23 -7.57 16 21 C 0.06 0.31 5.87 36.01 0.21 0.52 16 22 O -0.55 -3.98 13.19 -55.14 -0.73 -4.71 16 23 C 0.10 0.85 6.59 -3.58 -0.02 0.82 16 24 C 0.10 0.90 6.59 -3.58 -0.02 0.87 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.18 8.10 -51.93 -0.42 0.75 16 31 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.09 0.88 7.73 -51.93 -0.40 0.48 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.11 0.44 5.91 -51.93 -0.31 0.13 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.10 0.12 5.91 -51.93 -0.31 -0.18 16 38 H 0.08 0.20 7.72 -51.93 -0.40 -0.21 16 39 H 0.08 0.21 7.91 -51.93 -0.41 -0.20 16 40 H 0.39 0.56 9.12 45.56 0.42 0.97 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.98 6.99 -51.93 -0.36 0.61 16 43 H 0.11 1.13 6.99 -51.93 -0.36 0.77 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -39.11 358.92 -8.04 -47.15 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -6.31 Total: -5.00 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -0.97 Total: -4.80 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.28 Total: -37.98 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.87 Total: -21.38 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.11 -8.04 -47.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588660313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.339 kcal (2) G-P(sol) polarization free energy of solvation -39.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds