Wall clock time and date at job start Fri Apr 10 2020 17:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 O 1.21288 * 120.00038 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.46961 * 120.59075 * 359.72069 * 15 13 12 17 17 C 1.53814 * 108.39772 * 124.76035 * 16 15 13 18 18 N 1.46964 * 108.57935 * 49.63612 * 17 16 15 19 19 C 1.34778 * 120.59419 * 124.62525 * 18 17 16 20 20 O 1.21278 * 119.99720 * 180.02562 * 19 18 17 21 21 C 1.50704 * 119.99861 * 0.02562 * 19 18 17 22 22 O 1.42896 * 109.47014 * 179.97438 * 21 19 18 23 23 C 1.46958 * 118.80942 * 304.64842 * 18 17 16 24 24 C 1.46964 * 120.59577 * 180.02562 * 15 13 12 25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 34 34 H 1.09005 * 109.61049 * 244.54214 * 16 15 13 35 35 H 1.09000 * 109.61527 * 5.05260 * 16 15 13 36 36 H 1.09001 * 109.73977 * 289.84709 * 17 16 15 37 37 H 1.09001 * 109.67456 * 169.38886 * 17 16 15 38 38 H 1.08998 * 109.47072 * 299.99395 * 21 19 18 39 39 H 1.08997 * 109.47172 * 59.99862 * 21 19 18 40 40 H 0.96697 * 114.00278 * 179.97438 * 22 21 19 41 41 H 1.09002 * 109.61381 * 295.48101 * 23 18 17 42 42 H 1.09004 * 109.60866 * 174.97214 * 23 18 17 43 43 H 1.08996 * 109.60881 * 354.94515 * 24 15 13 44 44 H 1.09000 * 109.61086 * 115.28808 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7208 -7.4551 -0.0018 14 8 0.5079 -7.4551 -0.0018 15 7 2.3946 -8.6224 -0.0018 16 6 3.8641 -8.6376 -0.0080 17 6 4.3459 -9.4718 1.1911 18 7 3.6243 -10.7521 1.1910 19 6 4.2982 -11.9193 1.1901 20 8 3.6917 -12.9696 1.1896 21 6 5.8052 -11.9194 1.1897 22 8 6.2815 -13.2666 1.1893 23 6 2.1548 -10.7368 1.1915 24 6 1.6729 -9.9026 -0.0024 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6040 -0.8921 30 1 0.8543 -5.0449 0.8894 31 1 0.8525 -5.0447 -0.8905 32 1 3.1003 -6.0924 -0.8922 33 1 3.1016 -6.0924 0.8877 34 1 4.2214 -9.0850 -0.9355 35 1 4.2410 -7.6185 0.0784 36 1 4.1411 -8.9364 2.1182 37 1 5.4168 -9.6554 1.1038 38 1 6.1683 -11.4051 0.2999 39 1 6.1688 -11.4061 2.0798 40 1 7.2454 -13.3431 1.1886 41 1 1.7939 -10.2914 2.1186 42 1 1.7783 -11.7557 1.1014 43 1 0.6023 -9.7191 0.0877 44 1 1.8758 -10.4365 -0.9308 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588660313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:24 Heat of formation + Delta-G solvation = -155.221412 kcal Electronic energy + Delta-G solvation = -23874.461725 eV Core-core repulsion = 20211.381418 eV Total energy + Delta-G solvation = -3663.080307 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63393 -40.58652 -38.27997 -37.25114 -36.62088 -35.18977 -34.61971 -32.92676 -31.33408 -29.73408 -28.29894 -27.10537 -24.94698 -24.37694 -23.14459 -21.76638 -20.99538 -19.55195 -18.98585 -18.40765 -17.96045 -17.39253 -17.07441 -17.00769 -16.90130 -16.61782 -16.44964 -15.86214 -15.34364 -15.16554 -14.88237 -14.64904 -14.50305 -14.01185 -13.64092 -13.59646 -13.54484 -13.38172 -13.17515 -12.76858 -12.62548 -12.57700 -12.47034 -12.32349 -12.10584 -12.09336 -11.34240 -11.30653 -11.13628 -11.12864 -10.84917 -10.75028 -10.52413 -10.37459 -9.43799 -8.16643 -6.28800 1.42065 1.45957 1.45993 1.53755 1.57892 1.63333 2.04882 2.43639 3.16107 3.27290 3.51724 3.73826 3.77929 3.92555 4.04702 4.09984 4.15880 4.16712 4.25518 4.30043 4.40105 4.43745 4.57924 4.62687 4.71026 4.74513 4.75144 4.85333 4.90472 4.96915 5.21506 5.30332 5.35836 5.40233 5.45053 5.59605 5.81183 5.90737 6.18287 6.27130 6.35258 6.88984 6.90145 7.06448 7.14879 7.40872 8.95307 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.032797 B = 0.002229 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.528552 B =12559.660824 C =13248.708420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.512 3.488 14 O -0.588 6.588 15 N -0.615 5.615 16 C 0.083 3.917 17 C 0.087 3.913 18 N -0.609 5.609 19 C 0.502 3.498 20 O -0.582 6.582 21 C 0.063 3.937 22 O -0.585 6.585 23 C 0.105 3.895 24 C 0.102 3.898 25 H 0.262 0.738 26 H -0.018 1.018 27 H -0.017 1.017 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.409 0.591 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.178 -22.926 1.962 29.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.020 4.020 10 C -0.131 4.131 11 C -0.135 4.135 12 C -0.164 4.164 13 C 0.303 3.697 14 O -0.468 6.468 15 N -0.348 5.348 16 C -0.039 4.039 17 C -0.036 4.036 18 N -0.344 5.344 19 C 0.292 3.708 20 O -0.461 6.461 21 C -0.017 4.017 22 O -0.395 6.395 23 C -0.018 4.018 24 C -0.022 4.022 25 H 0.070 0.930 26 H 0.000 1.000 27 H 0.001 0.999 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.261 0.739 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.481 -23.514 1.965 29.366 hybrid contribution -0.211 0.993 -0.032 1.015 sum 17.269 -22.521 1.934 28.446 Atomic orbital electron populations 1.70136 1.08117 1.27743 1.51949 1.26120 0.95780 1.03823 0.94907 0.85433 0.78136 0.77664 0.79397 1.18839 1.21377 1.18795 1.21737 0.93813 0.92119 1.50089 0.91315 1.19073 0.94786 0.94002 0.94170 1.21431 0.97714 0.92409 1.01548 1.21261 0.97585 0.93895 1.00806 1.21716 0.98919 0.88864 1.06908 1.21375 0.87621 0.86548 0.74205 1.90701 1.16667 1.87886 1.51577 1.48191 1.08344 1.04837 1.73478 1.22642 0.77519 1.04127 0.99611 1.22635 0.98911 0.82512 0.99502 1.48116 1.06505 1.06635 1.73170 1.21355 0.91668 0.82714 0.75052 1.90707 1.71371 1.33013 1.50975 1.22070 0.88646 0.85608 1.05377 1.86527 1.29359 1.25666 1.97936 1.21832 0.80371 1.01306 0.98341 1.21854 0.98122 0.83754 0.98448 0.92951 0.99959 0.99871 0.91691 0.91848 0.94092 0.94260 0.85975 0.85604 0.89053 0.85222 0.89366 0.84318 0.86690 0.87008 0.73874 0.90812 0.89265 0.89742 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 2 C -0.01 -0.54 5.46 84.65 0.46 -0.07 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 0.90 4.97 29.85 0.15 1.05 16 10 C -0.09 -3.58 5.15 30.59 0.16 -3.42 16 11 C -0.10 -3.30 4.50 30.59 0.14 -3.16 16 12 C -0.12 -2.62 4.04 29.85 0.12 -2.50 16 13 C 0.51 12.73 7.70 87.66 0.67 13.40 16 14 O -0.59 -21.21 15.39 -3.05 -0.05 -21.25 16 15 N -0.61 -10.40 2.94 -817.08 -2.40 -12.80 16 16 C 0.08 0.54 6.53 86.57 0.57 1.10 16 17 C 0.09 0.36 6.52 86.57 0.56 0.93 16 18 N -0.61 -7.76 2.95 -817.08 -2.41 -10.17 16 19 C 0.50 8.51 7.77 87.66 0.68 9.19 16 20 O -0.58 -16.79 15.90 16.01 0.25 -16.54 16 21 C 0.06 0.42 5.87 71.24 0.42 0.83 16 22 O -0.59 -7.21 13.19 -129.94 -1.71 -8.92 16 23 C 0.11 1.79 6.59 86.43 0.57 2.36 16 24 C 0.10 1.87 6.59 86.43 0.57 2.44 16 25 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 26 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 27 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 32 H 0.12 1.87 7.90 -2.39 -0.02 1.85 16 33 H 0.13 1.82 7.73 -2.39 -0.02 1.80 16 34 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 35 H 0.13 0.28 5.91 -2.39 -0.01 0.27 16 36 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.14 -0.56 5.91 -2.39 -0.01 -0.57 16 38 H 0.12 -0.07 7.72 -2.39 -0.02 -0.09 16 39 H 0.11 0.00 7.91 -2.39 -0.02 -0.02 16 40 H 0.41 0.09 9.12 -74.06 -0.68 -0.58 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.81 6.99 -2.38 -0.02 1.79 16 43 H 0.08 1.95 6.99 -2.39 -0.02 1.93 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -92.07 358.92 1.62 -90.45 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 0.32 Total: -0.23 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.30 Total: -8.12 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -4.53 Total: -81.32 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -1.51 Total: -46.71 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -92.07 1.62 -90.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588660313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.775 kcal (2) G-P(sol) polarization free energy of solvation -92.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds